Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

10680955 .. 10681563

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAATTTTCAGAGGGAGAATTTTGTGCTCAGGATTATGGTGACGTTGATGAAGCTATTGGTGATGTACAATCAGATTCGTATTCAGAAAGCTTGGATATCATGGAAAATAATGAGCAAACAGGATACGACAATGCCACTACTTTTGGTGGAAGTAATGAGGAACATGTAGAAGATACTGAAGAACTTACTGATGTTCCGACTCTTGGTATGATCTTTAACTCTGAGCAAGATGCATATGAATATTATAATTCTTATGCTAAAACTATTGGCTTTAGTGTGAGAAAGCATAGAGTTAATAGAAAGAAAAATACCGGTGTGGTTTGGAAAAGATCGTATACATGCTCTCGTGAAGGTTTCTATCATAAAAAGAACACTCCAACAAAAAAAAGAGACGATCGGAGATGTGGATGTGAGGCACAGCTTGAGATCAGACTTCAAGATGGAAAATTTGCTGTGACAGCATTTCATTCTGAACATAACCATGATCTAGTTCCTCCATCACTTTCACATGCTTTAAGGTCACACCGAAACATACAGTCTTCTCAAGGTGGATTCATGGATCAAATGAACCATGCAGGGTTCAAGCCTTCACAAATCTTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

203

Amino Acids

23.1

Weight (kDa)

5.35

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	81 - 166	5.6e-23	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	570
AcsI	RAATTY	3 cut(s)	5, 20, 449
AcuI	CTGAAG	2 cut(s)	201, 586
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	166
AgeI	ACCGGT	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	440, 586
AluBI	AGCT	3 cut(s)	56, 93, 424
AluI	AGCT	3 cut(s)	56, 93, 424
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	570
ApoI	RAATTY	3 cut(s)	5, 20, 449
AsiGI	ACCGGT	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	53, 74
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	2 cut(s)	437, 508
BciVI	GTATCC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	119
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	446, 531
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	314
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	44, 216
Bsh1285I	CGRYCG	1 cut(s)	400
BshTI	ACCGGT	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	6 cut(s)	213, 332, 397, 429, 487, 562
BspCNI	CTCAG	2 cut(s)	43, 217
BspPI	GGATC	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	314
BssMI	GATC	6 cut(s)	213, 332, 397, 429, 487, 562
BssNAI	GTATAC	1 cut(s)	339
BssSI	CACGAG	1 cut(s)	348
Bst1107I	GTATAC	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	540
BstAUI	TGTACA	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	30, 225
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	6 cut(s)	216, 335, 400, 432, 490, 565
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	6 cut(s)	213, 332, 397, 429, 487, 562
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	3 cut(s)	170, 345, 515
BstV2I	GAAGAC	1 cut(s)	534
BstZ17I	GTATAC	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	416
Cfr10I	RCCGGY	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	68
CspAI	ACCGGT	1 cut(s)	314
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	7 cut(s)	103, 167, 342, 485, 512, 559, 575
CviJI	RGCY	5 cut(s)	56, 93, 273, 424, 589
CviKI_1	RGCY	5 cut(s)	56, 93, 273, 424, 589
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	30, 225
DpnI	GATC	6 cut(s)	215, 334, 399, 431, 489, 564
DpnII	GATC	6 cut(s)	213, 332, 397, 429, 487, 562
Eco32I	GATATC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	201, 586
EcoRV	GATATC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	7 cut(s)	106, 170, 345, 488, 515, 562, 578
FatI	CATG	7 cut(s)	102, 166, 341, 484, 511, 558, 574
FauNDI	CATATG	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	338
FokI	GGATG	1 cut(s)	423
FspBI	CTAG	1 cut(s)	491
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	7 cut(s)	106, 170, 345, 488, 515, 562, 578
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	3 cut(s)	77, 202, 555
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	53, 74
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	8 cut(s)	13, 76, 88, 201, 226, 402, 434, 475
Hpy188III	TCNNGA	3 cut(s)	32, 350, 440
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	2 cut(s)	347, 600
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	236, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	2 cut(s)	30, 225
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	7 cut(s)	106, 170, 345, 488, 515, 562, 578
Kzo9I	GATC	6 cut(s)	213, 332, 397, 429, 487, 562
LpnPI	CCDG	5 cut(s)	17, 108, 328, 564, 589
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	41, 457, 522
MalI	GATC	6 cut(s)	215, 334, 399, 431, 489, 564
MboI	GATC	6 cut(s)	213, 332, 397, 429, 487, 562
MboII	GAAGA	4 cut(s)	185, 194, 534, 592
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	4 cut(s)	5, 20, 250, 449
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	2 cut(s)	224, 404
MnlI	CCTC	4 cut(s)	7, 154, 409, 507
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	3 cut(s)	219, 297, 518
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	6 cut(s)	213, 332, 397, 429, 487, 562
NlaIII	CATG	7 cut(s)	106, 170, 345, 488, 515, 562, 578
NmuCI	GTSAC	3 cut(s)	41, 457, 522
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	3 cut(s)	170, 345, 515
PciI	ACATGT	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	77, 555
PinAI	ACCGGT	1 cut(s)	314
Ple19I	CGATCG	1 cut(s)	400
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	400
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	3 cut(s)	219, 297, 518
Sau3AI	GATC	6 cut(s)	213, 332, 397, 429, 487, 562
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	8 cut(s)	48, 58, 95, 358, 426, 524, 553, 608
SfaNI	GCATC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	425, 546
SmoI	CTYRAG	2 cut(s)	425, 546
Sse9I	AATT	4 cut(s)	5, 20, 250, 449
SspI	AATATT	1 cut(s)	245
SspMI	CTAG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	540
TaiI	ACGT	1 cut(s)	48
TasI	AATT	4 cut(s)	5, 20, 250, 449
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	77, 555
Tru1I	TTAA	3 cut(s)	219, 297, 518
Tru9I	TTAA	3 cut(s)	219, 297, 518
TseFI	GTSAC	3 cut(s)	41, 457, 522
Tsp45I	GTSAC	3 cut(s)	41, 457, 522
TspDTI	ATGAA	5 cut(s)	66, 255, 458, 547, 584
XapI	RAATTY	3 cut(s)	5, 20, 449
XceI	RCATGY	3 cut(s)	170, 345, 515
XmiI	GTMKAC	1 cut(s)	338
XspI	CTAG	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.