Rw5G032010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002145
Physical Location & Seq
Reverse (-)
53674759 .. 53676529
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032010.1

Sequence Viewer

Length: 249 bp
ATGGAAAATAAAGATGATGAATCTTGTTATCAGCATTGTAGTAACACTGAGAATGAGCAAAGAGGATGTGAAGATGATGCAATTGATGGTGAGACTAATGAGGAACTAGAATATGATACTCAAGAGGCCAGTAGCGATACTCAAGTGCCCAGTGATGATGAACACGTGGATTCTTGTTTAGAAGGTTTATGTATCTTGGATGGTAAGAAGCAAGCAGGAGTCTTTTTTGTTGAGACAGTAATGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.23

Weight (kDa)

4.05

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 86, 227
AoxI GGCC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 150
BaeI ACNNNNGTAYC 2 cut(s) 129, 162
BbrPI CACGTG 1 cut(s) 166
BccI CCATC 2 cut(s) 80, 194
BcoDI GTCTC 2 cut(s) 86, 227
BfaI CTAG 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 144
BpuEI CTTGAG 2 cut(s) 105, 126
BsaAI YACGTR 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 129, 150
BseGI GGATG 2 cut(s) 71, 205
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 129, 150
BseSI GKGCMC 1 cut(s) 150
BshFI GGCC 1 cut(s) 128
BsmAI GTCTC 2 cut(s) 86, 227
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 150
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 40
BsrI ACTGG 2 cut(s) 129, 150
Bst4CI ACNGT 1 cut(s) 238
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 71, 205
BstMAI GTCTC 2 cut(s) 86, 227
BstSLI GKGCMC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 2 cut(s) 71, 205
BtsIMutI CAGTG 2 cut(s) 45, 157
Cac8I GCNNGC 1 cut(s) 213
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
DdeI CTNAG 1 cut(s) 48
Eco72I CACGTG 1 cut(s) 166
FaiI YATR 2 cut(s) 114, 190
FokI GGATG 2 cut(s) 78, 212
FspBI CTAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 128
HinfI GANTC 3 cut(s) 20, 170, 219
HphI GGTGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 165
LpnPI CCDG 3 cut(s) 142, 163, 201
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 41
MboII GAAGA 1 cut(s) 83
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 81
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 3 cut(s) 56, 94, 118
MunI CAATTG 1 cut(s) 81
PfeI GAWTC 2 cut(s) 20, 170
PleI GAGTC 1 cut(s) 227
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
PpsI GAGTC 1 cut(s) 227
Ppu21I YACGTR 1 cut(s) 166
PspCI CACGTG 1 cut(s) 166
SchI GAGTC 1 cut(s) 228
SduI GDGCHC 1 cut(s) 150
SetI ASST 2 cut(s) 168, 187
SfaNI GCATC 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 120, 141
SmoI CTYRAG 2 cut(s) 120, 141
Sse9I AATT 1 cut(s) 81
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 168
TasI AATT 1 cut(s) 81
TfiI GAWTC 2 cut(s) 20, 170
TscAI CASTG 2 cut(s) 52, 157
TspDTI ATGAA 2 cut(s) 33, 174
TspRI CASTG 2 cut(s) 52, 157
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.