FvH4_6g46760

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002145
Physical Location & Seq
Reverse (-)
35591680 .. 35594042
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46760.t1

Sequence Viewer

Length: 495 bp
ATGGAATTTTCAGAGGGAGAATTTTGTGCTCAGGATTATGGTGACGTTGATGAAGCTATTGGTGATGTACAATCAGATTCGTATTCAGAAAGCTTGGATATCATGGAAAATAATGAGCAAACAGGATACGACAATGCCACTACTTTTGGTGGAAGTAATGAGGAACATGTAGAAGATATTGAAGAACTTACTGATGTTCCGACTCTTGGTATGATCTTTAACTCTGAGCAAGATGCATATGAATATTATAATTCTTATGCTAAAACTATTGGCTTTAGTGTGAGAAAGCATAGAGTTAATAGAAAGAAAAATACCGGTGTGGTTTGGAAAAGATCGTATACATGCTCTCGTGAAGGTTTCTATCATAAAAAGAACACTCCAACAAAAAAAAGAGACGATCGGAGATGTGGATGTGAGGCACAGCTTGAGATCAGACTTCAAGATGGAAAATTTGCTGTGACGCAGCATTTCATTCTGAACATAACCATGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

165

Amino Acids

18.89

Weight (kDa)

4.8

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 81 - 155 4.7e-17 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AccI GTMKAC 1 cut(s) 338
AcsI RAATTY 3 cut(s) 5, 20, 449
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 2 cut(s) 182, 440
AluBI AGCT 3 cut(s) 56, 93, 424
AluI AGCT 3 cut(s) 56, 93, 424
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 3 cut(s) 5, 20, 449
AsiGI ACCGGT 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 53, 74
BauI CACGAG 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 475
BccI CCATC 1 cut(s) 437
BciVI GTATCC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 493
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 1 cut(s) 464
BlsI GCNGC 1 cut(s) 465
BmsI GCATC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 446
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 314
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 2 cut(s) 44, 216
BseXI GCAGC 1 cut(s) 475
Bsh1285I CGRYCG 1 cut(s) 400
BshTI ACCGGT 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 387
BsmBI CGTCTC 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 31
Bsp1407I TGTACA 1 cut(s) 67
Bsp143I GATC 5 cut(s) 213, 332, 397, 429, 489
BspCNI CTCAG 2 cut(s) 43, 217
BsrFI RCCGGY 1 cut(s) 314
BsrGI TGTACA 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 314
BssMI GATC 5 cut(s) 213, 332, 397, 429, 489
BssNAI GTATAC 1 cut(s) 339
BssSI CACGAG 1 cut(s) 348
Bst1107I GTATAC 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 348
BstAUI TGTACA 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 30, 225
BstF5I GGATG 1 cut(s) 416
BstKTI GATC 5 cut(s) 216, 335, 400, 432, 492
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 5 cut(s) 213, 332, 397, 429, 489
BstMCI CGRYCG 1 cut(s) 400
BstNSI RCATGY 2 cut(s) 170, 345
BstV1I GCAGC 1 cut(s) 475
BstZ17I GTATAC 1 cut(s) 339
BsuI GTATCC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 314
CseI GACGC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 68
CspAI ACCGGT 1 cut(s) 314
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 4 cut(s) 103, 167, 342, 487
CviJI RGCY 4 cut(s) 56, 93, 273, 424
CviKI_1 RGCY 4 cut(s) 56, 93, 273, 424
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 2 cut(s) 30, 225
DpnI GATC 5 cut(s) 215, 334, 399, 431, 491
DpnII GATC 5 cut(s) 213, 332, 397, 429, 489
Eco32I GATATC 1 cut(s) 100
EcoRV GATATC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 4 cut(s) 106, 170, 345, 490
FatI CATG 4 cut(s) 102, 166, 341, 486
FauNDI CATATG 1 cut(s) 238
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 1 cut(s) 464
FokI GGATG 1 cut(s) 423
Fsp4HI GCNGC 1 cut(s) 464
FspBI CTAG 1 cut(s) 493
GluI GCNGC 1 cut(s) 464
HapII CCGG 1 cut(s) 315
HgaI GACGC 1 cut(s) 469
Hin1II CATG 4 cut(s) 106, 170, 345, 490
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 2 cut(s) 77, 202
HpaII CCGG 1 cut(s) 315
HphI GGTGA 2 cut(s) 53, 74
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 8 cut(s) 13, 76, 88, 201, 226, 402, 434, 477
Hpy188III TCNNGA 3 cut(s) 32, 350, 440
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 30, 225
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 4 cut(s) 106, 170, 345, 490
Kzo9I GATC 5 cut(s) 213, 332, 397, 429, 489
LpnPI CCDG 3 cut(s) 17, 108, 328
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 493
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 41, 457
MalI GATC 5 cut(s) 215, 334, 399, 431, 491
MboI GATC 5 cut(s) 213, 332, 397, 429, 489
MboII GAAGA 2 cut(s) 185, 194
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 4 cut(s) 5, 20, 250, 449
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 2 cut(s) 224, 404
MnlI CCTC 3 cut(s) 7, 154, 409
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 2 cut(s) 219, 297
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 1 cut(s) 315
NdeI CATATG 1 cut(s) 238
NdeII GATC 5 cut(s) 213, 332, 397, 429, 489
NlaIII CATG 4 cut(s) 106, 170, 345, 490
NmuCI GTSAC 2 cut(s) 41, 457
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 2 cut(s) 170, 345
PciI ACATGT 1 cut(s) 166
PfeI GAWTC 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 1 cut(s) 465
Ple19I CGATCG 1 cut(s) 400
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 1 cut(s) 166
PsiI TTATAA 1 cut(s) 249
PvuI CGATCG 1 cut(s) 400
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 2 cut(s) 219, 297
SatI GCNGC 1 cut(s) 464
Sau3AI GATC 5 cut(s) 213, 332, 397, 429, 489
SchI GAGTC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 31
SetI ASST 5 cut(s) 48, 58, 95, 358, 426
SfaNI GCATC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 4 cut(s) 5, 20, 250, 449
SspI AATATT 1 cut(s) 245
SspMI CTAG 1 cut(s) 493
TaiI ACGT 1 cut(s) 48
TasI AATT 4 cut(s) 5, 20, 250, 449
TatI WGTACW 1 cut(s) 67
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 219, 297
Tru9I TTAA 2 cut(s) 219, 297
TseFI GTSAC 2 cut(s) 41, 457
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 2 cut(s) 41, 457
TspDTI ATGAA 3 cut(s) 66, 255, 460
XapI RAATTY 3 cut(s) 5, 20, 449
XceI RCATGY 2 cut(s) 170, 345
XmiI GTMKAC 1 cut(s) 338
XspI CTAG 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.