Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009600.1

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

896 .. 1657

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009600.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgtacacaaaagcgagtttcaattgttttcaagaagagtttcgaaaatgtttggacttgatactggaatttgagagtgatgactggagaatagaaacatatgtggttcaaagaccagggaatccaaacttgagaaggtcagtcatctattccccttcaaatcagtcagttaattgtagttgtaagagatttccgtttgaagggatcctttgtgcacatgcattaaaattattccgtgagttaggcttgtcaacattaccatccaagtacttcttaaaaagatggagacgagatgctagacaaggagttgatcttcaatgttatggggaagcaaattttagtgatcggagcgcatcttctgcactccaatatagtcacttgtctcatgtagcacaaagaattgtagcaaaaggtgcaaaggataagcaatcatccactttggtggagtctaaattgttggagttggaggcagaattggatggaaatttatccattggacaagaacatgaaacaaatggtgatatagattcagacgatcaagtgaatgaaaataatgcaaatctggttttgcgtgatccaaaagttaagaggcgtagaaggcatggcaaaggtaagagaaataatgatttgggatctaagaagcaatcaaaaacgagatcttcatcagtgtggcaagaacaagaggatggtccaataccccttaaagaacaaaatgtctctgtatcaaagaaaaggaaagctccatctaaaagaaaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

253

Amino Acids

28.91

Weight (kDa)

9.46

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	199, 212, 569, 640
AcsI	RAATTY	3 cut(s)	68, 334, 484
AfaI	GTAC	2 cut(s)	5, 269
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	6 cut(s)	22, 32, 110, 159, 200, 317
AjnI	CCWGG	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	1 cut(s)	740
AluI	AGCT	1 cut(s)	740
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	3 cut(s)	280, 387, 721
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	4 cut(s)	199, 212, 569, 640
ApaLI	GTGCAC	1 cut(s)	213
ApoI	RAATTY	3 cut(s)	68, 334, 484
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	1 cut(s)	530
AsuII	TTCGAA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	689
BaeGI	GKGCMC	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	5 cut(s)	268, 276, 473, 680, 751
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	280, 387, 721
BfaI	CTAG	1 cut(s)	297
BglII	AGATCT	1 cut(s)	656
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	283, 362
BpmI	CTGGAG	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	661
BsaJI	CCNNGG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	69, 89
Bse8I	GATNNNNATC	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	4 cut(s)	260, 431, 484, 691
BseJI	GATNNNNATC	1 cut(s)	661
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	69, 89
BseSI	GKGCMC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	3 cut(s)	280, 387, 721
BsmBI	CGTCTC	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	7 cut(s)	204, 310, 343, 535, 574, 632, 656
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	4 cut(s)	199, 212, 569, 640
BspT104I	TTCGAA	1 cut(s)	43
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	69, 89
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	7 cut(s)	204, 310, 343, 535, 574, 632, 656
Bst2UI	CCWGG	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	2 cut(s)	359, 413
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	636
BstF5I	GGATG	4 cut(s)	260, 431, 484, 691
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	7 cut(s)	207, 313, 346, 538, 577, 635, 659
BstMAI	GTCTC	3 cut(s)	280, 387, 721
BstMBI	GATC	7 cut(s)	204, 310, 343, 535, 574, 632, 656
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 413, 598
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	217
BstX2I	RGATCY	3 cut(s)	204, 632, 656
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	3 cut(s)	204, 632, 656
BtsCI	GGATG	4 cut(s)	260, 431, 484, 691
BtsIMutI	CAGTG	1 cut(s)	672
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	4, 268
CviAII	CATG	4 cut(s)	218, 386, 506, 602
CviJI	RGCY	2 cut(s)	246, 740
CviKI_1	RGCY	2 cut(s)	246, 740
CviQI	GTAC	2 cut(s)	4, 268
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	7 cut(s)	206, 312, 345, 537, 576, 634, 658
DpnII	GATC	7 cut(s)	204, 310, 343, 535, 574, 632, 656
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	4 cut(s)	221, 389, 509, 605
FaiI	YATR	9 cut(s)	100, 102, 219, 324, 372, 387, 507, 524, 603
FalI	AAGNNNNNCTT	4 cut(s)	192, 224, 257, 289
FatI	CATG	4 cut(s)	217, 385, 505, 601
FauNDI	CATATG	1 cut(s)	100
FokI	GGATG	4 cut(s)	247, 418, 491, 698
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	352
GsuI	CTGGAG	1 cut(s)	106
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	4 cut(s)	221, 389, 509, 605
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	3 cut(s)	121, 446, 527
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	6, 215, 252
Hpy188I	TCNGA	2 cut(s)	348, 532
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	3 cut(s)	6, 215, 252
HpyAV	CCTTC	4 cut(s)	129, 165, 194, 591
HpyCH4V	TGCA	5 cut(s)	215, 221, 362, 416, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 413, 598
HpyF3I	CTNAG	1 cut(s)	636
Hsp92II	CATG	4 cut(s)	221, 389, 509, 605
HspAI	GCGC	1 cut(s)	351
Kzo9I	GATC	7 cut(s)	204, 310, 343, 535, 574, 632, 656
LmnI	GCTCC	2 cut(s)	348, 745
LpnPI	CCDG	5 cut(s)	50, 70, 102, 129, 548
LweI	GCATC	2 cut(s)	283, 362
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	7 cut(s)	206, 312, 345, 537, 576, 634, 658
MboI	GATC	7 cut(s)	204, 310, 343, 535, 574, 632, 656
MboII	GAAGA	4 cut(s)	47, 305, 348, 651
MfeI	CAATTG	1 cut(s)	22
MflI	RGATCY	3 cut(s)	204, 632, 656
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	9 cut(s)	22, 68, 172, 227, 334, 399, 452, 473, 484
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	438, 444
MnlI	CCTC	3 cut(s)	460, 582, 676
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	5 cut(s)	171, 224, 275, 585, 702
MslI	CAYNNNNRTG	2 cut(s)	440, 667
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	359, 413, 598
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	7 cut(s)	204, 310, 343, 535, 574, 632, 656
NlaIII	CATG	4 cut(s)	221, 389, 509, 605
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	1 cut(s)	221
NspV	TTCGAA	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	121, 527
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	689
PsuI	RGATCY	3 cut(s)	204, 632, 656
RsaI	GTAC	2 cut(s)	5, 269
RsaNI	GTAC	2 cut(s)	4, 268
RseI	CAYNNNNRTG	2 cut(s)	440, 667
SaqAI	TTAA	5 cut(s)	171, 224, 275, 585, 702
Sau3AI	GATC	7 cut(s)	204, 310, 343, 535, 574, 632, 656
Sau96I	GGNCC	1 cut(s)	689
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	5 cut(s)	140, 415, 613, 742, 760
SfaNI	GCATC	2 cut(s)	283, 362
SfuI	TTCGAA	1 cut(s)	43
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	2 cut(s)	440, 667
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	9 cut(s)	22, 68, 172, 227, 334, 399, 452, 473, 484
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	115
TaqI	TCGA	1 cut(s)	43
TasI	AATT	9 cut(s)	22, 68, 172, 227, 334, 399, 452, 473, 484
TatI	WGTACW	2 cut(s)	3, 267
TfiI	GAWTC	2 cut(s)	121, 527
Tru1I	TTAA	5 cut(s)	171, 224, 275, 585, 702
Tru9I	TTAA	5 cut(s)	171, 224, 275, 585, 702
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	522, 561, 651
TspGWI	ACGGA	2 cut(s)	183, 224
TspRI	CASTG	1 cut(s)	672
VneI	GTGCAC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	3 cut(s)	68, 334, 484
XceI	RCATGY	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	297
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.