FvH4_4g25611

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002145
Physical Location & Seq
Reverse (-)
27326406 .. 27330172
3767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25611.t1

Sequence Viewer

Length: 1221 bp
ATGGAAATTGAAGACGATGAATTTTATTCTCTTGGAGAAACGAATGAAGAGCTGGAATATGATAGTCCAGAGGTGGAGGGTGAAGCAGCAAGGTTGTACACAAAAGCCAGTTTCAATTGCTTTCAAGAAGAGTATCAAAAATGTTTGGACTTGATAGTAGAAAGAGGGATTGATGACGCGATAATAGAATCATATGTTCAAAGACCAGGAAATCCAAACTTGAGAAGGTCAGTCACATATTCACCTTCAAATCAGTCAGTTAATTGTAGTTGTAAGAGATTTCAGTTTGAAGGGATTCTTTGTGCACATGTGCTAAAATTATTCCGTGAGTTAGGCTTGTCAACATTACCATCTAAGTACTACTTAAAACGATGGAGACGAGATGCTAGAAAGGGAATTCATTTTCATTGTCATGAGGAAGCAAATTTAAGTGATCGTAGCGCATCTTCAGCTCTTCAATATAGTCACTTGTCTCATATAGCACAAAAAATTGTAGCAAAATGTGCAAAGGATAAACAATCATCAACTTTGGTGGAGTCTAAGTTGTTGGAGCTAGAGGCAGAATTGGATGGCAATTTACCTAGTCGACAAGAACATGAAGCAATTGGTGATATATATTCAGATGATGATCAAGTGCATGAAAATAATGCAAATTTAGTTTTGCGTGATCTAAAAGTAAAGAAGCGTAAAAGGCACGGCAAAGGCAAGAGGAACAATGATTTGGGATATAAGAAGAAGTTGAAAAAGAGATCTTCATCAGCACAACAGGAACAAGAGGATGCTCTAGTTCCCCTTATCAATGGATTGAGATCTAAGAAAATGCCAAAAAGAAGATCTACATCAATACGGCAGGAACAAGAGGATACTATGGGATCAGTTGGATTGGTTAATCAAAATCAAGCAAATATGCCCTTCATATGTCATGGTTTTCCAACAACTTTTGGTGCTCAAGGCATTCCCTTGCAGTATCCTTACCGACTTCCACCAACAACTTTTGGTGTGCAAGCAAGGCCTAATCAATCACATGGCATTCCCTCACAATATTTTCATGGAATTCCACCAACAGCTTCTACTATTCATCCAATTCCTAGTCATTCACTTGGTTACCAACTTATTCCACCAATATCTGATTATTCTCTTGTGTATTCCCAGGCTATCCCCCAACCAAGACATGAAGGACCAGCTCGGCAACTGAAATTTTCAGATCCATCGACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

407

Amino Acids

46.01

Weight (kDa)

8.28

Isoelectric Point (pI)

61.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 88 - 110 9.7e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 586
AccII CGCG 1 cut(s) 179
AclWI GGATC 2 cut(s) 880, 1199
AcsI RAATTY 6 cut(s) 20, 396, 424, 652, 1053, 1196
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 2 cut(s) 98, 359
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 8 cut(s) 11, 115, 125, 200, 249, 290, 458, 742
AjnI CCWGG 2 cut(s) 205, 1149
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 5 cut(s) 52, 452, 553, 1067, 1184
AluI AGCT 5 cut(s) 52, 452, 553, 1067, 1184
Alw21I GWGCWC 2 cut(s) 307, 949
Alw26I GTCTC 2 cut(s) 370, 477
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 2 cut(s) 880, 1199
AoxI GGCC 1 cut(s) 1010
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 6 cut(s) 20, 396, 424, 652, 1053, 1196
Asp700I GAANNNNTTC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 1178
AsuHPI GGTGA 3 cut(s) 92, 234, 620
AvaII GGWCC 1 cut(s) 1178
BaeGI GKGCMC 1 cut(s) 307
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 307, 949
BbvI GCAGC 1 cut(s) 98
BccI CCATC 4 cut(s) 358, 366, 563, 1216
BceAI ACGGC 2 cut(s) 712, 863
BciT130I CCWGG 2 cut(s) 207, 1151
BciVI GTATCC 2 cut(s) 856, 978
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 370, 477
BfaI CTAG 5 cut(s) 387, 554, 582, 785, 1089
BfuI GTATCC 2 cut(s) 856, 978
BglII AGATCT 3 cut(s) 749, 809, 833
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 207, 1151
Bme18I GGWCC 1 cut(s) 1178
BmgT120I GGNCC 1 cut(s) 1178
BmrFI CCNGG 2 cut(s) 207, 1151
BmsI GCATC 3 cut(s) 373, 452, 769
BpiI GAAGAC 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 241, 933
BsaBI GATNNNNATC 4 cut(s) 627, 754, 808, 838
BsaJI CCNNGG 1 cut(s) 1149
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bse1I ACTGG 1 cut(s) 108
Bse8I GATNNNNATC 4 cut(s) 627, 754, 808, 838
BseBI CCWGG 2 cut(s) 207, 1151
BseDI CCNNGG 1 cut(s) 1149
BseGI GGATG 3 cut(s) 574, 784, 1078
BseJI GATNNNNATC 4 cut(s) 627, 754, 808, 838
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 1012
BsiHKAI GWGCWC 2 cut(s) 307, 949
BsmAI GTCTC 2 cut(s) 370, 477
BsmBI CGTCTC 1 cut(s) 370
BsmI GAATGC 2 cut(s) 954, 1029
BsnI GGCC 1 cut(s) 1012
Bsp1286I GDGCHC 2 cut(s) 307, 949
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 8 cut(s) 433, 628, 667, 749, 809, 833, 872, 1204
BspANI GGCC 1 cut(s) 1012
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 412
BspPI GGATC 2 cut(s) 880, 1199
BspQI GCTCTTC 2 cut(s) 42, 459
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 1149
BssMI GATC 8 cut(s) 433, 628, 667, 749, 809, 833, 872, 1204
Bst2UI CCWGG 2 cut(s) 207, 1151
Bst6I CTCTTC 3 cut(s) 42, 123, 459
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 1005
BstDEI CTNAG 3 cut(s) 354, 540, 813
BstEII GGTNACC 1 cut(s) 1103
BstF5I GGATG 3 cut(s) 574, 784, 1078
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 8 cut(s) 436, 631, 670, 752, 812, 836, 875, 1207
BstMAI GTCTC 2 cut(s) 370, 477
BstMBI GATC 8 cut(s) 433, 628, 667, 749, 809, 833, 872, 1204
BstMWI GCNNNNNNNGC 4 cut(s) 449, 503, 691, 1009
BstNI CCWGG 2 cut(s) 207, 1151
BstNSI RCATGY 1 cut(s) 311
BstPI GGTNACC 1 cut(s) 1103
BstSCI CCNGG 2 cut(s) 205, 1149
BstSLI GKGCMC 1 cut(s) 307
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 4 cut(s) 749, 809, 833, 1204
BstYI RGATCY 4 cut(s) 749, 809, 833, 1204
BsuI GTATCC 2 cut(s) 856, 978
BsuRI GGCC 1 cut(s) 1012
BtsCI GGATG 3 cut(s) 574, 784, 1078
Cac8I GCNNGC 1 cut(s) 1005
CciI TCATGA 1 cut(s) 412
CfoI GCGC 1 cut(s) 443
Cfr13I GGNCC 1 cut(s) 1178
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 97, 358
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 8 cut(s) 308, 413, 596, 638, 923, 1025, 1049, 1172
CviJI RGCY 9 cut(s) 52, 107, 336, 452, 553, 1012, 1067, 1154, 1184
CviKI_1 RGCY 9 cut(s) 52, 107, 336, 452, 553, 1012, 1067, 1154, 1184
CviQI GTAC 2 cut(s) 97, 358
DdeI CTNAG 3 cut(s) 354, 540, 813
DpnI GATC 8 cut(s) 435, 630, 669, 751, 811, 835, 874, 1206
DpnII GATC 8 cut(s) 433, 628, 667, 749, 809, 833, 872, 1204
Eam1104I CTCTTC 3 cut(s) 42, 123, 459
EarI CTCTTC 3 cut(s) 42, 123, 459
Eco147I AGGCCT 1 cut(s) 1012
Eco47I GGWCC 1 cut(s) 1178
Eco57I CTGAAG 1 cut(s) 432
Eco91I GGTNACC 1 cut(s) 1103
EcoO65I GGTNACC 1 cut(s) 1103
EcoRI GAATTC 2 cut(s) 396, 1053
EcoRII CCWGG 2 cut(s) 205, 1149
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 8 cut(s) 311, 416, 599, 641, 926, 1028, 1052, 1175
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 347, 379
FatI CATG 8 cut(s) 307, 412, 595, 637, 922, 1024, 1048, 1171
FauNDI CATATG 2 cut(s) 193, 917
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 3 cut(s) 581, 791, 1065
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 5 cut(s) 387, 554, 582, 785, 1089
GlaI GCGC 1 cut(s) 442
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 1012
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 443
Hin1II CATG 8 cut(s) 311, 416, 599, 641, 926, 1028, 1052, 1175
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HincII GTYRAC 2 cut(s) 342, 587
HindII GTYRAC 2 cut(s) 342, 587
HinfI GANTC 3 cut(s) 188, 295, 536
HphI GGTGA 3 cut(s) 92, 234, 620
Hpy166II GTNNAC 4 cut(s) 99, 305, 342, 587
Hpy188I TCNGA 3 cut(s) 622, 1129, 1204
Hpy188III TCNNGA 3 cut(s) 68, 125, 413
Hpy8I GTNNAC 4 cut(s) 99, 305, 342, 587
HpyAV CCTTC 5 cut(s) 219, 255, 284, 922, 1169
HpyCH4V TGCA 6 cut(s) 305, 506, 637, 650, 964, 1003
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 503, 691, 1009
HpyF3I CTNAG 3 cut(s) 354, 540, 813
Hsp92II CATG 8 cut(s) 311, 416, 599, 641, 926, 1028, 1052, 1175
HspAI GCGC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 8 cut(s) 433, 628, 667, 749, 809, 833, 872, 1204
LguI GCTCTTC 2 cut(s) 42, 459
LmnI GCTCC 1 cut(s) 550
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 3 cut(s) 373, 452, 769
MaeI CTAG 5 cut(s) 387, 554, 582, 785, 1089
MaeIII GTNAC 3 cut(s) 232, 464, 1103
MalI GATC 8 cut(s) 435, 630, 669, 751, 811, 835, 874, 1206
MboI GATC 8 cut(s) 433, 628, 667, 749, 809, 833, 872, 1204
MboII GAAGA 8 cut(s) 23, 59, 140, 438, 446, 744, 745, 843
MfeI CAATTG 2 cut(s) 115, 603
MflI RGATCY 4 cut(s) 749, 809, 833, 1204
MhlI GDGCHC 2 cut(s) 307, 949
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 3 cut(s) 528, 859, 956
MnlI CCTC 9 cut(s) 64, 70, 158, 409, 550, 702, 769, 853, 1045
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 5 cut(s) 261, 365, 428, 888, 1219
MslI CAYNNNNRTG 1 cut(s) 411
MspR9I CCNGG 2 cut(s) 207, 1151
MunI CAATTG 2 cut(s) 115, 603
Mva1269I GAATGC 2 cut(s) 954, 1029
MvaI CCWGG 2 cut(s) 207, 1151
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 449, 503, 691, 1009
NdeI CATATG 2 cut(s) 193, 917
NdeII GATC 8 cut(s) 433, 628, 667, 749, 809, 833, 872, 1204
NlaIII CATG 8 cut(s) 311, 416, 599, 641, 926, 1028, 1052, 1175
NmeAIII GCCGAG 1 cut(s) 1165
NmuCI GTSAC 2 cut(s) 232, 464
NspI RCATGY 1 cut(s) 311
PagI TCATGA 1 cut(s) 412
PceI AGGCCT 1 cut(s) 1012
PciI ACATGT 1 cut(s) 307
PciSI GCTCTTC 2 cut(s) 42, 459
PcsI WCGNNNNNNNCGW 1 cut(s) 376
PctI GAATGC 2 cut(s) 954, 1029
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 188, 295
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
PscI ACATGT 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 205, 1149
PspEI GGTNACC 1 cut(s) 1103
PspGI CCWGG 2 cut(s) 205, 1149
PspPI GGNCC 1 cut(s) 1178
PsuI RGATCY 4 cut(s) 749, 809, 833, 1204
RsaI GTAC 2 cut(s) 98, 359
RsaNI GTAC 2 cut(s) 97, 358
RseI CAYNNNNRTG 1 cut(s) 411
SalI GTCGAC 1 cut(s) 585
SapI GCTCTTC 2 cut(s) 42, 459
SaqAI TTAA 5 cut(s) 261, 365, 428, 888, 1219
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 8 cut(s) 433, 628, 667, 749, 809, 833, 872, 1204
Sau96I GGNCC 1 cut(s) 1178
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 2 cut(s) 207, 1151
SduI GDGCHC 2 cut(s) 307, 949
SfaNI GCATC 3 cut(s) 373, 452, 769
SinI GGWCC 1 cut(s) 1178
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 220, 948
SmoI CTYRAG 2 cut(s) 220, 948
SseBI AGGCCT 1 cut(s) 1012
SspI AATATT 1 cut(s) 1043
SspMI CTAG 5 cut(s) 387, 554, 582, 785, 1089
StuI AGGCCT 1 cut(s) 1012
StyD4I CCNGG 2 cut(s) 205, 1149
TaqI TCGA 2 cut(s) 586, 1211
TatI WGTACW 2 cut(s) 96, 357
TfiI GAWTC 2 cut(s) 188, 295
Tru1I TTAA 5 cut(s) 261, 365, 428, 888, 1219
Tru9I TTAA 5 cut(s) 261, 365, 428, 888, 1219
TseFI GTSAC 2 cut(s) 232, 464
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 2 cut(s) 232, 464
TspGWI ACGGA 1 cut(s) 314
VneI GTGCAC 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 1178
XapI RAATTY 6 cut(s) 20, 396, 424, 652, 1053, 1196
XceI RCATGY 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 586
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 5 cut(s) 387, 554, 582, 785, 1089
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.