Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002145

Physical Location & Seq

Genomic Coordinates Reverse (-)

16508543 .. 16509397

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19451.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGGCAATGTGTTTTGCTGTGGATTTCAAGCAAAGCTGTAGCTGCAATATTGACCGATCATGTGCCGCATCTGATAGCTGATTATGAAATTTCTAGAGGGAGAATTTGGCCTCAAGATTATGATAACATTGAAGAAACTATGGGTGATGTACAATTAAGTTATTGTTTAGAAAGATTGAGCATCATGGACAACAATGAGCAAACCGGGACTCAGCCCCATAAAGAGGAATGCAGAAGACTTGCGCTAATGGCGTTTGATCATCAGTCGTTACTTGTGATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

4.98

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002145)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_1g08310 FvH4_2g12170 FvH4_2g12180 FvH4_2g19451 FvH4_3g23921 FvH4_4g25611 FvH4_5g29941 FvH4_6g17541 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760 FvH4_6g46760
prunus_persica	Prupe.1G194600_v2.0.a1 Prupe.4G265400_v2.0.a1 Prupe.I001300_v2.0.a1
pyrus_communis	pycom11g10270 pycom17g27220
rosa_chinensis	RchiOBHm_Chr1g0369391
rosa_laevigata	RLG00000016628 RLG00000017077
rosa_multiflora	Rmu_sc0004459.1_g000001 Rmu_sc0008921.1_g000017 Rmu_sc0009600.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023120 Rroxscaffold_1G00042200 Rroxscaffold_7G00200270
rosa_rugosa	Rorug06G0105800.1 Rorug06G0247300 Rorug07G0023300
rosa_samantha	Rh1AG232800 Rh1CG217500 Rh2BG480600 Rh2DG489500 Rh4AG024200 Rh5AG295100 Rh5AG295300 Rh5AG338800 Rh5CG298700 Rh7BG152500
rosa_wichuraiana	Rw5G032010

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	90, 105
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	30, 134
AluBI	AGCT	3 cut(s)	38, 44, 80
AluI	AGCT	3 cut(s)	38, 44, 80
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	90, 105
AspLEI	GCGC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	208
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	2 cut(s)	45, 68
BlsI	GCNGC	2 cut(s)	46, 69
Bme1390I	CCNGG	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	2 cut(s)	79, 192
BpiI	GAAGAC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	112
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	58, 259
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	151
BssMI	GATC	2 cut(s)	58, 259
BstAUI	TGTACA	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	61, 262
BstMBI	GATC	2 cut(s)	58, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 251
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	62, 187
CviJI	RGCY	5 cut(s)	38, 44, 80, 112, 217
CviKI_1	RGCY	5 cut(s)	38, 44, 80, 112, 217
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	60, 261
DpnII	GATC	2 cut(s)	58, 259
FaeI	CATG	2 cut(s)	65, 190
FaiI	YATR	6 cut(s)	63, 87, 123, 143, 188, 222
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	2 cut(s)	61, 186
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	45, 68
Fsp4HI	GCNGC	2 cut(s)	45, 68
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	45, 68
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	65, 190
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	96, 116
HpyCH4V	TGCA	2 cut(s)	47, 234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 251
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	65, 190
HspAI	GCGC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	58, 259
LpnPI	CCDG	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	79, 192
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	2 cut(s)	60, 261
MboI	GATC	2 cut(s)	58, 259
MboII	GAAGA	2 cut(s)	146, 249
MluCI	AATT	3 cut(s)	90, 105, 155
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	92, 123, 220
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	44, 251
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	58, 259
NlaIII	CATG	2 cut(s)	65, 190
PctI	GAATGC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	46, 69
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	45, 68
Sau3AI	GATC	2 cut(s)	58, 259
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	3 cut(s)	40, 46, 82
SfaNI	GCATC	2 cut(s)	79, 192
SfcI	CTRYAG	1 cut(s)	39
SgeI	CNNG	8 cut(s)	42, 74, 108, 128, 199, 219, 220, 254
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	3 cut(s)	90, 105, 155
SsiI	CCGC	1 cut(s)	68
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	90, 105, 155
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	102
XapI	RAATTY	2 cut(s)	90, 105
XbaI	TCTAGA	1 cut(s)	95
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.