FvH4_2g16040

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
13990693 .. 13993992
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16040.t1

Sequence Viewer

Length: 1455 bp
ATGAGAGATCAAGAGGATGTTGAAACAAATTCAAGGCAAGGTTTTGCTCAAGACTTTTCCAACATGGACAATGGAGTCCCACAACCAGTCACAATGAGTCCCAAAAACTGGGCAGGTGGTGAGCTCAATCCACAAGATGCTTGGCTACCCCTCACAGAGTCCAGAAAAGGGACTATCTATTCTACTACCTTTCATCTTCTGTGTTCAGGACTTGGAATTCAAGCCCTTTTACTACCTGTTGCTTTTGCTACTCTTGGATGGGCATGGGGAATCATATGCTTGTCAATAGTGTGTTCATGGAAGTTCTACACGATGTCACTCCTTGTACGATTACATGAATCTGATTCTGGAATTCGATATAGTAGATACGTCCACCTTGCAGTAACTGCCTTTGGTCCAAAGCTAGGGATGTTGTTAGCTTTGTTCCCAGCAATGTATCTTTCTGGTGGTGCGTGTGTGCAGCTAATCATCATAGGAGGTGGAATTATAAAGCTTCTAGTAAGAACAGTGTGCAAGGATGGTGCAACTTGTGATCCTAATTCAATGCATGGTATATTGTGCTTCTTTGTGTTTATGTTCATGGCTATCTGTGTAGCCGAGTACTTCCCCAACTTGAACTCCGTAGCTGGAGTCTCTGTGATTGGTACCATTACAGCAATTGTATATTGTACCATGATATGGGCTCTTTCAATCGGCAAGGGCAGGCTTAATGATGTATCGTATGAGCCTCCAGCTATGGACTCTACCATGGAGTCCTTCAGTAGTGTACTGAATTCAGTTGGCATCATTTTCCTTGCATTCAGAGGTCAAAATGTTATCCTTGAGATACAGGGGACATTGCCATCAAACCCAAGACATCCTTCATGTAAGAGAGCGTGGAGTGGAGTGACTATATCACATGTAGTAATAGCCTTGTGTTTGTTTTCTCTTGCACTTGGTGGATATCGGGCTTATGGAAACAAGGTACCTTTCGCGAATACAGAAGTGGTGAAAGCCGTTTCTCAGTTCCATGCACAAAAAATCTCACAATTTGTCCTGGAACTACTTTGCATACTGGTATTGATAAACTGCTTGACTACATTCCAAATCTATGGCATGGTAGTTTTTGACAACTTTGAGATGAAGTACACCATTAGGAAGAAGCAGCCGTGCCCGAGATGGCTTCGGATAGTTTTACGCCTTTTCGTTGGTGGATTTGCATTCTTTTTAGCAGTTGCCTTGCCATTCTTGGGAAGACTATCACCCCTACTTGGGGCAGTTACATCAGTGCCTTTGACATATGTTTATCCATGTTTTATGTGGAATTCTATCAAGAAACCAAAGCCAAAAGGCGTCATTTGGTGTACTAATATGGGACTCGGATGCTTGGGAGTGGTTTTGAGTGTTCTTTTTGTTGTTGCAGCAGCTTGGGATTTGGCTGACAAGGGCTTGGTTGCCAACTTCTTCAAGCCGTAA

Protein Analysis

485

Amino Acids

53.14

Weight (kDa)

8.96

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 56 - 466 5.2e-52 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AarI CACCTGC 1 cut(s) 104
AasI GACNNNNNNGTC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 104
Acc65I GGTACC 2 cut(s) 644, 964
AccB1I GGYRCC 2 cut(s) 644, 964
AccB7I CCANNNNNTGG 2 cut(s) 108, 678
AccII CGCG 1 cut(s) 974
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 5 cut(s) 28, 216, 351, 772, 1303
AcuI CTGAAG 1 cut(s) 742
AcyI GRCGYC 1 cut(s) 1332
AdeI CACNNNGTG 1 cut(s) 938
AfaI GTAC 8 cut(s) 327, 602, 646, 670, 768, 966, 1127, 1345
AfiI CCNNNNNNNGG 8 cut(s) 108, 168, 404, 678, 1229, 1250, 1251, 1252
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 7 cut(s) 23, 33, 221, 543, 616, 690, 1447
AjnI CCWGG 1 cut(s) 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 844, 876
AluBI AGCT 8 cut(s) 124, 403, 419, 463, 493, 626, 734, 1406
AluI AGCT 8 cut(s) 124, 403, 419, 463, 493, 626, 734, 1406
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 1 cut(s) 527
AlwNI CAGNNNCTG 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 1153
ApeKI GCWGC 4 cut(s) 460, 1144, 1400, 1403
ApoI RAATTY 5 cut(s) 28, 216, 351, 772, 1303
Asp718I GGTACC 2 cut(s) 644, 964
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 131, 1000, 1233
AvaI CYCGRG 1 cut(s) 1153
AvaII GGWCC 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 1154
BanI GGYRCC 2 cut(s) 644, 964
BanII GRGCYC 2 cut(s) 126, 685
BbsI GAAGAC 1 cut(s) 1240
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 4 cut(s) 472, 1156, 1412, 1415
BccI CCATC 4 cut(s) 252, 512, 850, 1152
BceAI ACGGC 3 cut(s) 980, 1132, 1435
BciT130I CCWGG 1 cut(s) 1037
BcoDI GTCTC 1 cut(s) 637
BfaI CTAG 2 cut(s) 404, 497
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 4 cut(s) 461, 1145, 1401, 1404
BlsI GCNGC 4 cut(s) 462, 1146, 1402, 1405
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 1 cut(s) 1037
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 1153
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 646, 966
BmrFI CCNGG 1 cut(s) 1037
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 3 cut(s) 127, 792, 1352
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 1240
BpmI CTGGAG 2 cut(s) 648, 714
BpuEI CTTGAG 2 cut(s) 33, 842
BsaHI GRCGYC 1 cut(s) 1332
BsaJI CCNNGG 1 cut(s) 747
BsaXI ACNNNNNCTCC 4 cut(s) 602, 621, 632, 651
Bsc4I CCNNNNNNNGG 8 cut(s) 108, 168, 404, 678, 1229, 1250, 1251, 1252
Bse1I ACTGG 3 cut(s) 86, 113, 1059
Bse3DI GCAATG 2 cut(s) 438, 836
BseBI CCWGG 1 cut(s) 1037
BseDI CCNNGG 1 cut(s) 747
BseGI GGATG 6 cut(s) 22, 263, 414, 523, 856, 1367
BseLI CCNNNNNNNGG 8 cut(s) 108, 168, 404, 678, 1229, 1250, 1251, 1252
BseMI GCAATG 2 cut(s) 438, 836
BseMII CTCAG 1 cut(s) 1016
BseNI ACTGG 3 cut(s) 86, 113, 1059
BseSI GKGCMC 1 cut(s) 1154
BseXI GCAGC 4 cut(s) 472, 1156, 1412, 1415
BseYI CCCAGC 1 cut(s) 427
BsgI GTGCAG 1 cut(s) 479
Bsh1236I CGCG 1 cut(s) 974
BshNI GGYRCC 2 cut(s) 644, 964
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 1153
BslFI GGGAC 5 cut(s) 62, 84, 184, 847, 1368
BslI CCNNNNNNNGG 8 cut(s) 108, 168, 404, 678, 1229, 1250, 1251, 1252
BsmAI GTCTC 1 cut(s) 637
BsmFI GGGAC 5 cut(s) 62, 84, 184, 847, 1368
BsmI GAATGC 2 cut(s) 797, 1199
BsoBI CYCGRG 1 cut(s) 1153
Bsp1286I GDGCHC 3 cut(s) 126, 685, 1154
Bsp143I GATC 2 cut(s) 7, 532
Bsp19I CCATGG 1 cut(s) 747
Bsp68I TCGCGA 1 cut(s) 974
BspCNI CTCAG 1 cut(s) 1015
BspFNI CGCG 1 cut(s) 974
BspLI GGNNCC 2 cut(s) 646, 966
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 527
BspT107I GGYRCC 2 cut(s) 644, 964
BsrDI GCAATG 2 cut(s) 438, 836
BsrI ACTGG 3 cut(s) 86, 113, 1059
BssECI CCNNGG 1 cut(s) 747
BssMI GATC 2 cut(s) 7, 532
BssNI GRCGYC 1 cut(s) 1332
BssT1I CCWWGG 1 cut(s) 747
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 1 cut(s) 508
BstACI GRCGYC 1 cut(s) 1332
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 704
BstDEI CTNAG 1 cut(s) 1002
BstDSI CCRYGG 1 cut(s) 747
BstF5I GGATG 6 cut(s) 22, 263, 414, 523, 856, 1367
BstFNI CGCG 1 cut(s) 974
BstKTI GATC 2 cut(s) 10, 535
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 2 cut(s) 7, 532
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 1037
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 1035
BstSLI GKGCMC 1 cut(s) 1154
BstUI CGCG 1 cut(s) 974
BstV1I GCAGC 4 cut(s) 472, 1156, 1412, 1415
BstV2I GAAGAC 1 cut(s) 1240
BstXI CCANNNNNNTGG 1 cut(s) 1091
BtgI CCRYGG 1 cut(s) 747
BtsCI GGATG 6 cut(s) 22, 263, 414, 523, 856, 1367
BtsIMutI CAGTG 2 cut(s) 513, 1272
BtuMI TCGCGA 1 cut(s) 974
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 704
CaiI CAGNNNCTG 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 395
CseI GACGC 1 cut(s) 1321
Csp6I GTAC 8 cut(s) 326, 601, 645, 669, 767, 965, 1126, 1344
CviQI GTAC 8 cut(s) 326, 601, 645, 669, 767, 965, 1126, 1344
DdeI CTNAG 1 cut(s) 1002
DpnI GATC 2 cut(s) 9, 534
DpnII GATC 2 cut(s) 7, 532
DraIII CACNNNGTG 1 cut(s) 938
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 2 cut(s) 126, 685
Eco32I GATATC 1 cut(s) 944
Eco47I GGWCC 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 1153
EcoICRI GAGCTC 1 cut(s) 124
EcoRI GAATTC 4 cut(s) 216, 351, 772, 1303
EcoRII CCWGG 1 cut(s) 1035
EcoRV GATATC 1 cut(s) 944
EcoT14I CCWWGG 1 cut(s) 747
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 126, 685
ErhI CCWWGG 1 cut(s) 747
FalI AAGNNNNNCTT 2 cut(s) 844, 876
FaqI GGGAC 5 cut(s) 62, 84, 184, 847, 1368
FauNDI CATATG 2 cut(s) 275, 1279
Fnu4HI GCNGC 4 cut(s) 461, 1145, 1401, 1404
FokI GGATG 6 cut(s) 29, 270, 421, 530, 843, 1374
FriOI GRGCYC 2 cut(s) 126, 685
Fsp4HI GCNGC 4 cut(s) 461, 1145, 1401, 1404
FspBI CTAG 2 cut(s) 404, 497
GluI GCNGC 4 cut(s) 461, 1145, 1401, 1404
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 2 cut(s) 648, 714
HgaI GACGC 1 cut(s) 1321
Hin1I GRCGYC 1 cut(s) 1332
HindIII AAGCTT 1 cut(s) 491
HphI GGTGA 3 cut(s) 131, 1000, 1233
Hpy166II GTNNAC 4 cut(s) 373, 767, 1128, 1344
Hpy188I TCNGA 4 cut(s) 343, 803, 1167, 1361
Hpy188III TCNNGA 7 cut(s) 11, 50, 162, 207, 348, 973, 1312
Hpy8I GTNNAC 4 cut(s) 373, 767, 1128, 1344
HpyAV CCTTC 2 cut(s) 766, 870
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 1 cut(s) 1002
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 1332
KpnI GGTACC 2 cut(s) 648, 968
Kzo9I GATC 2 cut(s) 7, 532
Lsp1109I GCAGC 4 cut(s) 472, 1156, 1412, 1415
LweI GCATC 3 cut(s) 127, 792, 1352
MaeI CTAG 2 cut(s) 404, 497
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 5 cut(s) 88, 315, 382, 886, 1258
MalI GATC 2 cut(s) 9, 534
MboI GATC 2 cut(s) 7, 532
MboII GAAGA 4 cut(s) 188, 1150, 1245, 1435
MfeI CAATTG 1 cut(s) 657
MhlI GDGCHC 3 cut(s) 126, 685, 1154
MluCI AATT 9 cut(s) 28, 216, 351, 483, 538, 657, 772, 1028, 1303
MlyI GAGTC 7 cut(s) 84, 106, 167, 639, 734, 761, 1350
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 5 cut(s) 7, 161, 470, 738, 797
Mph1103I ATGCAT 1 cut(s) 549
MseI TTAA 1 cut(s) 708
MspR9I CCNGG 1 cut(s) 1037
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 2 cut(s) 797, 1199
MvaI CCWGG 1 cut(s) 1037
MvnI CGCG 1 cut(s) 974
MwoI GCNNNNNNNGC 1 cut(s) 386
NcoI CCATGG 1 cut(s) 747
NdeI CATATG 2 cut(s) 275, 1279
NdeII GATC 2 cut(s) 7, 532
NlaIV GGNNCC 2 cut(s) 646, 966
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 3 cut(s) 88, 315, 886
NruI TCGCGA 1 cut(s) 974
NsiI ATGCAT 1 cut(s) 549
NspI RCATGY 1 cut(s) 902
PaqCI CACCTGC 1 cut(s) 104
PciI ACATGT 1 cut(s) 898
PctI GAATGC 2 cut(s) 797, 1199
PfeI GAWTC 3 cut(s) 270, 338, 344
PflMI CCANNNNNTGG 2 cut(s) 108, 678
PfoI TCCNGGA 1 cut(s) 1035
PkrI GCNGC 4 cut(s) 462, 1146, 1402, 1405
PleI GAGTC 7 cut(s) 83, 105, 166, 638, 734, 760, 1350
PpsI GAGTC 7 cut(s) 83, 105, 166, 638, 734, 760, 1350
PscI ACATGT 1 cut(s) 898
PsiI TTATAA 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 1035
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 1035
PspN4I GGNNCC 2 cut(s) 646, 966
PspPI GGNCC 1 cut(s) 395
PstNI CAGNNNCTG 1 cut(s) 386
RruI TCGCGA 1 cut(s) 974
RsaI GTAC 8 cut(s) 327, 602, 646, 670, 768, 966, 1127, 1345
RsaNI GTAC 8 cut(s) 326, 601, 645, 669, 767, 965, 1126, 1344
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 708
SatI GCNGC 4 cut(s) 461, 1145, 1401, 1404
Sau3AI GATC 2 cut(s) 7, 532
Sau96I GGNCC 1 cut(s) 395
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 7 cut(s) 84, 106, 167, 639, 734, 761, 1350
ScrFI CCNGG 1 cut(s) 1037
SduI GDGCHC 3 cut(s) 126, 685, 1154
SfaNI GCATC 3 cut(s) 127, 792, 1352
SinI GGWCC 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 48, 821
SmoI CTYRAG 2 cut(s) 48, 821
Sse9I AATT 9 cut(s) 28, 216, 351, 483, 538, 657, 772, 1028, 1303
SspMI CTAG 2 cut(s) 404, 497
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 1035
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 355
TasI AATT 9 cut(s) 28, 216, 351, 483, 538, 657, 772, 1028, 1303
TatI WGTACW 4 cut(s) 600, 766, 1125, 1343
TfiI GAWTC 3 cut(s) 270, 338, 344
Tru1I TTAA 1 cut(s) 708
Tru9I TTAA 1 cut(s) 708
TscAI CASTG 2 cut(s) 513, 1272
TseFI GTSAC 3 cut(s) 88, 315, 886
TseI GCWGC 4 cut(s) 460, 1144, 1400, 1403
Tsp45I GTSAC 3 cut(s) 88, 315, 886
TspDTI ATGAA 6 cut(s) 182, 285, 351, 568, 852, 1136
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 2 cut(s) 513, 1272
Van91I CCANNNNNTGG 2 cut(s) 108, 678
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 5 cut(s) 28, 216, 351, 772, 1303
XceI RCATGY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 1296
XspI CTAG 2 cut(s) 404, 497
ZrmI AGTACT 1 cut(s) 602
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.