Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

16011928 .. 16016476

Gene Structure 4549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGAAAAACTTGGAAGAGGTGGCTGTTGAAGCAAATTGCCGGGAAGAAATAACTAGGCAAAGCCATTCCTTAAGAAGCTTGTTCAGAAACCCATCAGGTTACTCTGCTCAAGTAATTCCCATCACAACTACTCCCTCAAAGGAATCAACTGAAATTTGGGTAGGTGGTGAGCTCATTCCACAGGATGCTTGGCTGCCCATCACAGAATCCAGAAATGGGAATGTCTTTTCTGCTACCTTTCATTTACTTTGTTCAGGAATTGGAGTTCAATCGCTTTTACTGCCTCTTGCATTTGCCACTGTTGGATGGACATGGGGAATTATATGCTTGTCACTAGCGTTCTCATGGCAACTCTACACCTCATGGCTTCTCGTACATCTACACGAATCCAACTCCGGAATTCGGTACAGTAGATACCTGCACCTCGCAATAACAGCCTTTGGTCCAAAGTTAGGGAAATTGCTCACCATATTCCCAGTAATGTACTTATCAGGGGGCACGTGTGCCCAGCTGATCATCGTAGGAGGTGGAACCATGAAACTATTCCTAAAAAATGTTTGGAATGTTAACTCATTGACTGCCACAGAGTGCTTCTTGTTGTTCATCTGCATGGCTATTGTTGTGGCTCAGCTTCCCAACTTGAACTCCATAGCTTGGGTCTCACTTATTGGTGCCACCACAGCAATTGCATATTGTACTCTTATTTGGGGCCTTTCAATTGGCAAGGGGAGGCCTAGTGGCATTTCGTACAACCCACCAGAGATGGATGAAAAAATGGATAGATTTGGGGAGATTCTGAATGCTCTTGGCATCATTGTTCTTGCATTCAGAGGCCACAATGTCATTCTTGAGATTCAAGGGACATTGCCATCTAGTCCAAAACAGACATCCCAAAACCAGATGTGGAGAGGAGTGACTGTATCTTATGCAGTTACAGCAATGTGCTTCCTTCCTCTTGCCGTGGCTGGGTTTTGGGCTTATGGAAACAACATACCATCTTCGTATGGACGAATTTTGAGCTCTTTTTCACAATTCAATGGACATAAAAGCACATCAAAAATTGTGTTGGGACTAATTTGCATACTTGTAGTGATAAACTGCTTAAGCACATTTCAAATCTACAGCATGGTAGTTTTTGATAATTTGGAGTTCAAATACACTAGCAGGAAGAACAAGCCATGTGCAAAGTGGCTTCGGATAGCTTTTCGGATTTCGTTCGGAGGACTGGTATTTTTCATAGCTGTCGCTGTTCCATTCTTGCCGAGCCTAGCACCTCTAATCGGAGGCATGACTCTGCCTTTGGCATATGCTTATCCATGTTTCATGTGGATCACAATGAAGAAACCAGAGCCGAAGAGTGCTATGTGGTGTGTGAATATTGGGCTTGGATTCTTGGGGCTAAGTTTGAGTGTTGTTTTAGTCATTGCATCAGTATGGAATTTAGCTGACAAAGGTCTACGTGCAAATTTCTTCCGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

494

Amino Acids

54.27

Weight (kDa)

9.23

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	671
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	1456
AccIII	TCCGGA	1 cut(s)	395
AclWI	GGATC	1 cut(s)	1337
AcsI	RAATTY	5 cut(s)	153, 399, 1011, 1438, 1465
AcvI	CACGTG	1 cut(s)	501
AdeI	CACNNNGTG	1 cut(s)	588
AfaI	GTAC	5 cut(s)	375, 407, 485, 697, 749
AfiI	CCNNNNNNNGG	6 cut(s)	216, 402, 452, 654, 966, 1280
AflII	CTTAAG	2 cut(s)	70, 1102
AflIII	ACRYGT	1 cut(s)	500
AgsI	TTSAA	8 cut(s)	29, 269, 643, 717, 857, 1036, 1115, 1153
AloI	GAACNNNNNNTCC	2 cut(s)	249, 281
AluBI	AGCT	9 cut(s)	78, 172, 511, 631, 653, 1020, 1202, 1241, 1445
AluI	AGCT	9 cut(s)	78, 172, 511, 631, 653, 1020, 1202, 1241, 1445
Alw21I	GWGCWC	2 cut(s)	174, 1022
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	1 cut(s)	1337
Aor13HI	TCCGGA	1 cut(s)	395
AoxI	GGCC	4 cut(s)	709, 731, 832, 1475
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	5 cut(s)	153, 399, 1011, 1438, 1465
ArsI	GACNNNNNNTTYG	2 cut(s)	1282, 1314
Asp700I	GAANNNNTTC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	443, 709
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	179, 457
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	2 cut(s)	500, 508
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	2 cut(s)	174, 1022
BbrPI	CACGTG	1 cut(s)	501
Bbv12I	GWGCWC	2 cut(s)	174, 1022
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	7 cut(s)	100, 128, 206, 300, 757, 877, 1003
BceAI	ACGGC	1 cut(s)	944
BclI	TGATCA	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	6 cut(s)	54, 335, 735, 873, 1161, 1268
BfmI	CTRYAG	1 cut(s)	1120
BfrI	CTTAAG	2 cut(s)	70, 1102
BfuAI	ACCTGC	1 cut(s)	426
BisI	GCNGC	1 cut(s)	194
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	443, 709
BmiI	GGNNCC	3 cut(s)	532, 673, 710
BmrFI	CCNGG	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	3 cut(s)	175, 819, 1436
BmuI	ACTGGG	1 cut(s)	470
BoxI	GACNNNNGTC	1 cut(s)	1452
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	93, 869
BpuMI	CCSGG	1 cut(s)	41
BsaAI	YACGTR	2 cut(s)	501, 1460
BsaI	GGTCTC	1 cut(s)	664
BsaJI	CCNNGG	1 cut(s)	960
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	6 cut(s)	216, 402, 452, 654, 966, 1280
Bse1I	ACTGG	2 cut(s)	476, 1230
Bse3DI	GCAATG	3 cut(s)	863, 945, 1422
BseAI	TCCGGA	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	960
BseGI	GGATG	4 cut(s)	190, 311, 772, 887
BseLI	CCNNNNNNNGG	6 cut(s)	216, 402, 452, 654, 966, 1280
BseMI	GCAATG	3 cut(s)	863, 945, 1422
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	2 cut(s)	476, 1230
BseRI	GAGGAG	1 cut(s)	924
BseSI	GKGCMC	2 cut(s)	500, 508
BseXI	GCAGC	1 cut(s)	180
BseYI	CCCAGC	2 cut(s)	507, 965
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	711, 733, 834, 1477
BshNI	GGYRCC	1 cut(s)	671
BsiHKAI	GWGCWC	2 cut(s)	174, 1022
BsiSI	CCGG	3 cut(s)	40, 396, 1474
BslFI	GGGAC	2 cut(s)	874, 1083
BslI	CCNNNNNNNGG	6 cut(s)	216, 402, 452, 654, 966, 1280
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	2 cut(s)	874, 1083
BsmI	GAATGC	2 cut(s)	805, 824
BsnI	GGCC	4 cut(s)	711, 733, 834, 1477
Bso31I	GGTCTC	1 cut(s)	664
Bsp1286I	GDGCHC	4 cut(s)	174, 500, 508, 1022
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	513, 1329
Bsp1720I	GCTNAGC	1 cut(s)	627
BspANI	GGCC	4 cut(s)	711, 733, 834, 1477
BspCNI	CTCAG	1 cut(s)	640
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	532, 673, 710
BspMI	ACCTGC	1 cut(s)	426
BspPI	GGATC	1 cut(s)	1337
BspT107I	GGYRCC	1 cut(s)	671
BspTI	CTTAAG	2 cut(s)	70, 1102
BspTNI	GGTCTC	1 cut(s)	664
BsrDI	GCAATG	3 cut(s)	863, 945, 1422
BsrI	ACTGG	2 cut(s)	476, 1230
BssECI	CCNNGG	1 cut(s)	960
BssMI	GATC	2 cut(s)	513, 1329
Bst4CI	ACNGT	3 cut(s)	301, 410, 919
Bst6I	CTCTTC	2 cut(s)	9, 1349
BstAFI	CTTAAG	2 cut(s)	70, 1102
BstBAI	YACGTR	2 cut(s)	501, 1460
BstDEI	CTNAG	3 cut(s)	627, 1400, 1479
BstDSI	CCRYGG	1 cut(s)	960
BstF5I	GGATG	4 cut(s)	190, 311, 772, 887
BstKTI	GATC	2 cut(s)	516, 1332
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	2 cut(s)	513, 1329
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 280, 434, 680, 935
BstPAI	GACNNNNGTC	1 cut(s)	1452
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	1120
BstSLI	GKGCMC	2 cut(s)	500, 508
BstV1I	GCAGC	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	711, 733, 834, 1477
BtgI	CCRYGG	1 cut(s)	960
BtsCI	GGATG	4 cut(s)	190, 311, 772, 887
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	443, 709
Csp6I	GTAC	5 cut(s)	374, 406, 484, 696, 748
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviQI	GTAC	5 cut(s)	374, 406, 484, 696, 748
DdeI	CTNAG	3 cut(s)	627, 1400, 1479
DpnI	GATC	2 cut(s)	515, 1331
DpnII	GATC	2 cut(s)	513, 1329
DraIII	CACNNNGTG	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	9, 1349
EarI	CTCTTC	2 cut(s)	9, 1349
Ecl136II	GAGCTC	2 cut(s)	172, 1020
Eco147I	AGGCCT	1 cut(s)	733
Eco24I	GRGCYC	2 cut(s)	174, 1022
Eco31I	GGTCTC	1 cut(s)	664
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	2 cut(s)	172, 1020
Eco72I	CACGTG	1 cut(s)	501
EcoICRI	GAGCTC	2 cut(s)	172, 1020
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRI	GAATTC	1 cut(s)	399
EcoT38I	GRGCYC	2 cut(s)	174, 1022
FaqI	GGGAC	2 cut(s)	874, 1083
FauNDI	CATATG	1 cut(s)	1306
FbaI	TGATCA	1 cut(s)	513
FblI	GTMKAC	1 cut(s)	1456
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	4 cut(s)	197, 318, 779, 874
FriOI	GRGCYC	2 cut(s)	174, 1022
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	6 cut(s)	54, 335, 735, 873, 1161, 1268
GluI	GCNGC	1 cut(s)	194
GsaI	CCCAGC	2 cut(s)	511, 969
HaeIII	GGCC	4 cut(s)	711, 733, 834, 1477
HapII	CCGG	3 cut(s)	40, 396, 1474
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	7 cut(s)	143, 206, 386, 793, 853, 1291, 1389
HpaI	GTTAAC	1 cut(s)	568
HpaII	CCGG	3 cut(s)	40, 396, 1474
HphI	GGTGA	2 cut(s)	179, 457
Hpy166II	GTNNAC	2 cut(s)	568, 1457
Hpy188I	TCNGA	7 cut(s)	86, 798, 830, 1197, 1209, 1220, 1283
Hpy188III	TCNNGA	4 cut(s)	210, 255, 396, 848
Hpy8I	GTNNAC	2 cut(s)	568, 1457
HpyAV	CCTTC	1 cut(s)	959
HpyCH4III	ACNGT	3 cut(s)	301, 410, 919
HpyCH4IV	ACGT	2 cut(s)	500, 1459
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 280, 434, 680, 935
HpyF3I	CTNAG	3 cut(s)	627, 1400, 1479
HpySE526I	ACGT	2 cut(s)	500, 1459
Kpn2I	TCCGGA	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	513
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	513, 1329
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	3 cut(s)	175, 819, 1436
MaeI	CTAG	6 cut(s)	54, 335, 735, 873, 1161, 1268
MaeII	ACGT	2 cut(s)	500, 1459
MaeIII	GTNAC	4 cut(s)	98, 330, 913, 931
MalI	GATC	2 cut(s)	515, 1331
MboI	GATC	2 cut(s)	513, 1329
MboII	GAAGA	7 cut(s)	26, 56, 990, 1180, 1351, 1366, 1462
MfeI	CAATTG	2 cut(s)	684, 717
MhlI	GDGCHC	4 cut(s)	174, 500, 508, 1022
MlyI	GAGTC	1 cut(s)	1285
MmeI	TCCRAC	2 cut(s)	283, 414
MroI	TCCGGA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	3 cut(s)	71, 567, 1103
MslI	CAYNNNNRTG	2 cut(s)	608, 1432
MspA1I	CMGCKG	1 cut(s)	511
MspCI	CTTAAG	2 cut(s)	70, 1102
MspI	CCGG	3 cut(s)	40, 396, 1474
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	2 cut(s)	684, 717
Mva1269I	GAATGC	2 cut(s)	805, 824
MwoI	GCNNNNNNNGC	5 cut(s)	29, 280, 434, 680, 935
NciI	CCSGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	1306
NdeII	GATC	2 cut(s)	513, 1329
NlaIV	GGNNCC	3 cut(s)	532, 673, 710
NmeAIII	GCCGAG	1 cut(s)	1287
NmuCI	GTSAC	2 cut(s)	330, 913
PceI	AGGCCT	1 cut(s)	733
PctI	GAATGC	2 cut(s)	805, 824
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	6 cut(s)	143, 206, 386, 793, 853, 1389
PflMI	CCANNNNNTGG	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	1285
PmaCI	CACGTG	1 cut(s)	501
PmlI	CACGTG	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	1285
Ppu21I	YACGTR	2 cut(s)	501, 1460
PshAI	GACNNNNGTC	1 cut(s)	1452
Psp124BI	GAGCTC	2 cut(s)	174, 1022
PspCI	CACGTG	1 cut(s)	501
PspFI	CCCAGC	2 cut(s)	507, 965
PspN4I	GGNNCC	3 cut(s)	532, 673, 710
PspPI	GGNCC	2 cut(s)	443, 709
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	5 cut(s)	375, 407, 485, 697, 749
RsaNI	GTAC	5 cut(s)	374, 406, 484, 696, 748
RseI	CAYNNNNRTG	2 cut(s)	608, 1432
SacI	GAGCTC	2 cut(s)	174, 1022
SaqAI	TTAA	3 cut(s)	71, 567, 1103
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	513, 1329
Sau96I	GGNCC	2 cut(s)	443, 709
SchI	GAGTC	1 cut(s)	1285
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	4 cut(s)	174, 500, 508, 1022
SfaNI	GCATC	3 cut(s)	175, 819, 1436
SfcI	CTRYAG	1 cut(s)	1120
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	608, 1432
SmlI	CTYRAG	4 cut(s)	70, 108, 848, 1102
SmoI	CTYRAG	4 cut(s)	70, 108, 848, 1102
SseBI	AGGCCT	1 cut(s)	733
SspI	AATATT	1 cut(s)	1378
SspMI	CTAG	6 cut(s)	54, 335, 735, 873, 1161, 1268
SstI	GAGCTC	2 cut(s)	174, 1022
StuI	AGGCCT	1 cut(s)	733
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	301, 410, 919
TaiI	ACGT	2 cut(s)	503, 1462
TatI	WGTACW	2 cut(s)	483, 695
TfiI	GAWTC	6 cut(s)	143, 206, 386, 793, 853, 1389
Tru1I	TTAA	3 cut(s)	71, 567, 1103
Tru9I	TTAA	3 cut(s)	71, 567, 1103
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	330, 913
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	2 cut(s)	330, 913
TspDTI	ATGAA	8 cut(s)	17, 230, 551, 592, 783, 1225, 1312, 1352
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	654
Vha464I	CTTAAG	2 cut(s)	70, 1102
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	5 cut(s)	153, 399, 1011, 1438, 1465
XcmI	CCANNNNNNNNNTGG	3 cut(s)	186, 1185, 1323
XmiI	GTMKAC	1 cut(s)	1456
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	6 cut(s)	54, 335, 735, 873, 1161, 1268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.