Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

14946561 .. 14946872

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCAGACTTGGAAGAGGTGGTTGTTGAAGCAAATTTCAGGGAAGAAATAAATAGGCATAGCCATTCCTTAAAAAGCTTGTTCAGAAGCTCATCAGGTTACTCTGCTCAAGTCATTCCCATCACAACTACTCCCCCAAATGAATCAACTGAAATATGGACAGGTGGTGAGCTCATTCCACAGGATGCTTGGCTGCCCATCACAGAATCCAGGAATGGGAATGTGTTTTCAGCTATCTTTCATTTACTTTGCTCAGGAATTGGGATCCAATCCCTTTTACTGCCTCTTGCATTTGCCACTCTTGAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

4.68

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	259, 272
AcsI	RAATTY	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	29, 305
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	4 cut(s)	78, 90, 172, 233
AluI	AGCT	4 cut(s)	78, 90, 172, 233
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	259, 272
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	2 cut(s)	128, 206
BciT130I	CCWGG	1 cut(s)	211
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	259, 272
BssMI	GATC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	63, 78, 90, 172, 193, 233
CviKI_1	RGCY	6 cut(s)	63, 78, 90, 172, 193, 233
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	174
FaiI	YATR	2 cut(s)	60, 157
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	2 cut(s)	143, 206
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	255, 302
HpyCH4V	TGCA	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	264
LpnPI	CCDG	7 cut(s)	25, 81, 147, 167, 196, 223, 240
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	2 cut(s)	26, 56
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	34, 258
MnlI	CCTC	2 cut(s)	10, 294
MseI	TTAA	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	143, 206
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	21, 80, 92, 100, 166, 174, 235
SfaNI	GCATC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	34, 258
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	209
TasI	AATT	2 cut(s)	34, 258
TfiI	GAWTC	2 cut(s)	143, 206
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	156, 230
XapI	RAATTY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.