Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

17666231 .. 17668246

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0127000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGCCACCCAATTGAGAGCTTCTTCCTCATTATCTTCTGTTCCTTTTTCTACCCGTTCATACACACACGATGTGTTTCTGAGTTTCAGAGGCGAGGATACACGCTACAATTTTACAGGTCATTTACACAGAAATTTGGTTCAAAGGGGGATCAACACTTTCAAAGATGATGATGATCTTCCAAGAGGAGAGGAAATATCAGAAGCACTTCTCCGAGCCATTGAAGTATCAAAGCTCTCTCTCATTGTGTTCTCTGAAGACTATGCATCCTCAGAGTATTGTTTGGATGAACTAGTTCATATCCTTGAATGTAGAAGATCAAAGAACCAAATGGTTCGGCCAATCTTTTACAAAGTGGATCCATCGGACGTAGGACAGCAACGAGGTACATTTGGTAAGGCACTTGCAGAGCATGAGCGCAGATTCGAAGATGACAAGGTGTTAAGATGGAGAGCAGCTCTTTTAGAAGCGGCTAATTTGTCTGGGTGGCATTTCTCGAGCGGGTATGAATCTAAATTTATTGATATAATTGTTGAAGAGGTCTCTACACAACTAAAAGATCGTACCAATTTGGATGTGGCAAAGTGTCCGGTTGGGATAAACTCTCGCCTACAAGACATGCTTGAAATTTTAGATGTTAGGGGAGGTGATCATATACGTATGGTAGGGATATGGGGAAGTGGTGGAATAGGGAAGACAACAATTGCTAAAGCTGTTTACAATACAGTTGCCCATGAGTTTGATGGTAGCTGCTTTTTGGCAAATGTTAGAGAACGTTCAGAGCAATATGGAGGTTTAGTCAACCTACAAAACATCATTCTTTCAAAGATTCCAGGGGGCAAAGAACTGAAAGTAATCAATGTTGATGAAGGAATTACTTTGTTGCGGGAGAGGTTGAGATATAAAAGGATTCTTTTAGTTCTTGATGATGTGGATCAATCGGACCAGTTAGAGAAATTAGCTGGGAGACCAGATTGGTTTCACAGCGGTAGTAGAGTTATCATAACAACAAGAGATAGGCATTTGTTGATTGCTCATCGAGTGAGTCAAATATACAAGGCCCGGGGACTTAATCGTCATGAAGCTTGTGAGCTATTCCTTGAAAATGCCTTGATGACTAATAGAAATATGGATGATGATGAAAGACTCGCAGTTAACACTACTGTTGAATATGCTCAAGGCCTTCCATTAGCGCTGAAAGTTTTAGGTTCACATCTGTGCAGTAAACCTATACATCGGTGGCAAGCTTTATTAGATGGTCATAGAAGAAGTCCTCTTCAAGGCATTCAAAAGATTCTCAAAATCAGTTACGATGCACTGGAAGAACCAGAGAAAGAAATTTTCCTTCACATTGCATGCTTCTTCAAATATAAAAATAAGAACGATGTGATATCAATATTAGAAGGTTGTGGTTACAGCAACCCTATGTCTAGTATTGAAGTTCTTGAAGAAAAGGCCCTCCTAAATGTTGAACATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

493

Amino Acids

56.04

Weight (kDa)

6.3

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	23 - 190	2e-53	TIR domain
TIR_2	PF13676	25 - 121	1.5e-13	TIR domain
NB-ARC	PF00931	216 - 373	4.3e-19	NB-ARC domain
WHD_ROQ1	PF23282	441 - 491	1.9e-06	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1074
AccBSI	CCGCTC	1 cut(s)	501
AciI	CCGC	4 cut(s)	470, 501, 886, 987
AclI	AACGTT	1 cut(s)	775
AclWI	GGATC	4 cut(s)	158, 353, 366, 942
AcoI	YGGCCR	2 cut(s)	3, 338
AcsI	RAATTY	4 cut(s)	133, 515, 627, 1338
AcuI	CTGAAG	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	2 cut(s)	388, 565
AfeI	AGCGCT	1 cut(s)	1194
AfiI	CCNNNNNNNGG	1 cut(s)	1280
AhlI	ACTAGT	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	832
AleI	CACNNNNGTG	1 cut(s)	1216
AluBI	AGCT	9 cut(s)	20, 235, 458, 713, 750, 962, 1085, 1093, 1247
AluI	AGCT	9 cut(s)	20, 235, 458, 713, 750, 962, 1085, 1093, 1247
Alw26I	GTCTC	2 cut(s)	547, 961
AlwI	GGATC	4 cut(s)	158, 353, 366, 942
Ama87I	CYCGRG	2 cut(s)	496, 1062
Aor51HI	AGCGCT	1 cut(s)	1194
AoxI	GGCC	5 cut(s)	3, 338, 1059, 1180, 1455
ApeKI	GCWGC	2 cut(s)	455, 750
ApoI	RAATTY	4 cut(s)	133, 515, 627, 1338
Asp700I	GAANNNNTTC	2 cut(s)	207, 294
AspLEI	GCGC	2 cut(s)	420, 1195
AspS9I	GGNCC	3 cut(s)	943, 1060, 1456
AsuC2I	CCSGG	2 cut(s)	1063, 1064
AsuHPI	GGTGA	1 cut(s)	659
AsuII	TTCGAA	1 cut(s)	426
AvaI	CYCGRG	2 cut(s)	496, 1062
AvaII	GGWCC	1 cut(s)	943
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	358
BbsI	GAAGAC	2 cut(s)	264, 701
BbvI	GCAGC	2 cut(s)	467, 737
BccI	CCATC	4 cut(s)	370, 441, 737, 1250
BciT130I	CCWGG	1 cut(s)	834
BciVI	GTATCC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	2 cut(s)	1063, 1064
BcoDI	GTCTC	2 cut(s)	547, 961
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	2 cut(s)	293, 1431
BfoI	RGCGCY	1 cut(s)	1196
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	3 cut(s)	456, 471, 751
BlsI	GCNGC	3 cut(s)	457, 472, 752
Bme1390I	CCNGG	3 cut(s)	834, 1063, 1064
Bme18I	GGWCC	1 cut(s)	943
BmeT110I	CYCGRG	2 cut(s)	496, 1062
BmgT120I	GGNCC	3 cut(s)	943, 1060, 1456
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	3 cut(s)	834, 1063, 1064
BmsI	GCATC	2 cut(s)	275, 1303
BpiI	GAAGAC	2 cut(s)	264, 701
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	1161
BpuMI	CCSGG	2 cut(s)	1063, 1064
BsaAI	YACGTR	1 cut(s)	659
BsaBI	GATNNNNATC	2 cut(s)	174, 933
BsaI	GGTCTC	2 cut(s)	547, 961
BsaJI	CCNNGG	3 cut(s)	833, 1062, 1063
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	1 cut(s)	1280
Bse1I	ACTGG	2 cut(s)	946, 1323
Bse3DI	GCAATG	1 cut(s)	1350
Bse8I	GATNNNNATC	2 cut(s)	174, 933
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	3 cut(s)	833, 1062, 1063
BseGI	GGATG	4 cut(s)	266, 292, 580, 1138
BseJI	GATNNNNATC	2 cut(s)	174, 933
BseLI	CCNNNNNNNGG	1 cut(s)	1280
BseMI	GCAATG	1 cut(s)	1350
BseMII	CTCAG	2 cut(s)	71, 285
BseNI	ACTGG	2 cut(s)	946, 1323
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	467, 737
BseYI	CCCAGC	1 cut(s)	962
BsgI	GTGCAG	1 cut(s)	1240
BshFI	GGCC	5 cut(s)	5, 340, 1061, 1182, 1457
BsiHKCI	CYCGRG	2 cut(s)	496, 1062
BsiSI	CCGG	2 cut(s)	590, 1063
BslFI	GGGAC	1 cut(s)	1080
BslI	CCNNNNNNNGG	1 cut(s)	1280
BsmAI	GTCTC	2 cut(s)	547, 961
BsmFI	GGGAC	1 cut(s)	1080
BsmI	GAATGC	1 cut(s)	1284
BsnI	GGCC	5 cut(s)	5, 340, 1061, 1182, 1457
Bso31I	GGTCTC	2 cut(s)	547, 961
BsoBI	CYCGRG	2 cut(s)	496, 1062
Bsp119I	TTCGAA	1 cut(s)	426
Bsp143I	GATC	7 cut(s)	150, 175, 317, 358, 559, 649, 934
BspACI	CCGC	4 cut(s)	470, 501, 886, 987
BspANI	GGCC	5 cut(s)	5, 340, 1061, 1182, 1457
BspCNI	CTCAG	2 cut(s)	72, 284
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	4 cut(s)	158, 353, 366, 942
BspT104I	TTCGAA	1 cut(s)	426
BspTNI	GGTCTC	2 cut(s)	547, 961
BsrBI	CCGCTC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	1350
BsrI	ACTGG	2 cut(s)	946, 1323
BssECI	CCNNGG	3 cut(s)	833, 1062, 1063
BssMI	GATC	7 cut(s)	150, 175, 317, 358, 559, 649, 934
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	2 cut(s)	727, 1165
Bst6I	CTCTTC	2 cut(s)	531, 1281
BstBAI	YACGTR	1 cut(s)	659
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	1245, 1357
BstDEI	CTNAG	2 cut(s)	80, 271
BstENI	CCTNNNNNAGG	1 cut(s)	1278
BstF5I	GGATG	4 cut(s)	266, 292, 580, 1138
BstH2I	RGCGCY	1 cut(s)	1196
BstHHI	GCGC	2 cut(s)	420, 1195
BstKTI	GATC	7 cut(s)	153, 178, 320, 361, 562, 652, 937
BstMAI	GTCTC	2 cut(s)	547, 961
BstMBI	GATC	7 cut(s)	150, 175, 317, 358, 559, 649, 934
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	2 cut(s)	622, 1359
BstSCI	CCNGG	3 cut(s)	832, 1061, 1062
BstSNI	TACGTA	1 cut(s)	659
BstV1I	GCAGC	2 cut(s)	467, 737
BstV2I	GAAGAC	2 cut(s)	264, 701
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	5 cut(s)	5, 340, 1061, 1182, 1457
BtsCI	GGATG	4 cut(s)	266, 292, 580, 1138
BtsIMutI	CAGTG	1 cut(s)	1316
Cac8I	GCNNGC	2 cut(s)	1245, 1357
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	2 cut(s)	420, 1195
Cfr13I	GGNCC	3 cut(s)	943, 1060, 1456
Cfr9I	CCCGGG	1 cut(s)	1062
Csp6I	GTAC	2 cut(s)	387, 564
CviAII	CATG	5 cut(s)	413, 619, 734, 1079, 1356
CviQI	GTAC	2 cut(s)	387, 564
DdeI	CTNAG	2 cut(s)	80, 271
DpnI	GATC	7 cut(s)	152, 177, 319, 360, 561, 651, 936
DpnII	GATC	7 cut(s)	150, 175, 317, 358, 559, 649, 934
DraIII	CACNNNGTG	1 cut(s)	73
DrdI	GACNNNNNNGTC	1 cut(s)	1074
DseDI	GACNNNNNNGTC	1 cut(s)	1074
EaeI	YGGCCR	2 cut(s)	3, 338
Eam1104I	CTCTTC	2 cut(s)	531, 1281
EarI	CTCTTC	2 cut(s)	531, 1281
Eco105I	TACGTA	1 cut(s)	659
Eco147I	AGGCCT	1 cut(s)	1182
Eco31I	GGTCTC	2 cut(s)	547, 961
Eco32I	GATATC	1 cut(s)	1392
Eco47I	GGWCC	1 cut(s)	943
Eco47III	AGCGCT	1 cut(s)	1194
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	2 cut(s)	496, 1062
EcoNI	CCTNNNNNAGG	1 cut(s)	1278
EcoO109I	RGGNCCY	1 cut(s)	1456
EcoRII	CCWGG	1 cut(s)	832
EcoRV	GATATC	1 cut(s)	1392
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	5 cut(s)	416, 622, 737, 1082, 1359
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	1 cut(s)	1080
FatI	CATG	5 cut(s)	412, 618, 733, 1078, 1355
FauI	CCCGC	2 cut(s)	494, 879
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	456, 471, 751
FokI	GGATG	4 cut(s)	253, 299, 587, 1145
Fsp4HI	GCNGC	3 cut(s)	456, 471, 751
FspBI	CTAG	2 cut(s)	293, 1431
GlaI	GCGC	2 cut(s)	419, 1194
GluI	GCNGC	3 cut(s)	456, 471, 751
GsaI	CCCAGC	1 cut(s)	966
HaeII	RGCGCY	1 cut(s)	1196
HaeIII	GGCC	5 cut(s)	5, 340, 1061, 1182, 1457
HapII	CCGG	2 cut(s)	590, 1063
HhaI	GCGC	2 cut(s)	420, 1195
Hin1II	CATG	5 cut(s)	416, 622, 737, 1082, 1359
Hin6I	GCGC	2 cut(s)	418, 1193
HinP1I	GCGC	2 cut(s)	418, 1193
HincII	GTYRAC	2 cut(s)	802, 1156
HindII	GTYRAC	2 cut(s)	802, 1156
HindIII	AAGCTT	2 cut(s)	1083, 1245
HinfI	GANTC	7 cut(s)	423, 509, 829, 910, 1045, 1146, 1294
HpaI	GTTAAC	1 cut(s)	1156
HpaII	CCGG	2 cut(s)	590, 1063
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	5 cut(s)	718, 802, 1156, 1211, 1226
Hpy188I	TCNGA	9 cut(s)	81, 89, 202, 215, 256, 274, 367, 781, 943
Hpy188III	TCNNGA	4 cut(s)	496, 923, 1079, 1445
Hpy8I	GTNNAC	5 cut(s)	718, 802, 1156, 1211, 1226
HpyAV	CCTTC	4 cut(s)	863, 1193, 1355, 1397
HpyCH4III	ACNGT	2 cut(s)	727, 1165
HpyCH4IV	ACGT	3 cut(s)	369, 658, 775
HpyCH4V	TGCA	5 cut(s)	266, 407, 1221, 1316, 1355
HpyF3I	CTNAG	2 cut(s)	80, 271
HpySE526I	ACGT	3 cut(s)	369, 658, 775
Hsp92II	CATG	5 cut(s)	416, 622, 737, 1082, 1359
HspAI	GCGC	2 cut(s)	418, 1193
Ksp22I	TGATCA	1 cut(s)	649
KspAI	GTTAAC	1 cut(s)	1156
Kzo9I	GATC	7 cut(s)	150, 175, 317, 358, 559, 649, 934
Lsp1109I	GCAGC	2 cut(s)	467, 737
LweI	GCATC	2 cut(s)	275, 1303
MaeI	CTAG	2 cut(s)	293, 1431
MaeII	ACGT	3 cut(s)	369, 658, 775
MaeIII	GTNAC	2 cut(s)	1307, 1412
MalI	GATC	7 cut(s)	152, 177, 319, 360, 561, 651, 936
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	7 cut(s)	150, 175, 317, 358, 559, 649, 934
MfeI	CAATTG	2 cut(s)	11, 702
MflI	RGATCY	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	1054, 1140
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	2 cut(s)	207, 294
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	443, 1071, 1155, 1480
MslI	CAYNNNNRTG	1 cut(s)	1216
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	987
MspI	CCGG	2 cut(s)	590, 1063
MspR9I	CCNGG	3 cut(s)	834, 1063, 1064
MunI	CAATTG	2 cut(s)	11, 702
Mva1269I	GAATGC	1 cut(s)	1284
MvaI	CCWGG	1 cut(s)	834
NciI	CCSGG	2 cut(s)	1063, 1064
NdeII	GATC	7 cut(s)	150, 175, 317, 358, 559, 649, 934
NlaIII	CATG	5 cut(s)	416, 622, 737, 1082, 1359
NlaIV	GGNNCC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	2 cut(s)	622, 1359
NspV	TTCGAA	1 cut(s)	426
OliI	CACNNNNGTG	1 cut(s)	1216
PaeI	GCATGC	1 cut(s)	1359
PaeR7I	CTCGAG	1 cut(s)	496
PagI	TCATGA	1 cut(s)	1078
PceI	AGGCCT	1 cut(s)	1182
PctI	GAATGC	1 cut(s)	1284
PdmI	GAANNNNTTC	2 cut(s)	207, 294
PfeI	GAWTC	5 cut(s)	423, 509, 829, 910, 1294
PkrI	GCNGC	3 cut(s)	457, 472, 752
PleI	GAGTC	2 cut(s)	1053, 1140
PpsI	GAGTC	2 cut(s)	1053, 1140
Ppu21I	YACGTR	1 cut(s)	659
Psp1406I	AACGTT	1 cut(s)	775
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	962
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	3 cut(s)	943, 1060, 1456
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	388, 565
RsaNI	GTAC	2 cut(s)	387, 564
RseI	CAYNNNNRTG	1 cut(s)	1216
SaqAI	TTAA	4 cut(s)	443, 1071, 1155, 1480
SatI	GCNGC	3 cut(s)	456, 471, 751
Sau3AI	GATC	7 cut(s)	150, 175, 317, 358, 559, 649, 934
Sau96I	GGNCC	3 cut(s)	943, 1060, 1456
SchI	GAGTC	2 cut(s)	1054, 1140
ScrFI	CCNGG	3 cut(s)	834, 1063, 1064
SfaNI	GCATC	2 cut(s)	275, 1303
Sfr274I	CTCGAG	1 cut(s)	496
SfuI	TTCGAA	1 cut(s)	426
SinI	GGWCC	1 cut(s)	943
SlaI	CTCGAG	1 cut(s)	496
SmaI	CCCGGG	1 cut(s)	1064
SmiMI	CAYNNNNRTG	1 cut(s)	1216
SmlI	CTYRAG	2 cut(s)	496, 1176
SmoI	CTYRAG	2 cut(s)	496, 1176
SnaBI	TACGTA	1 cut(s)	659
SpeI	ACTAGT	1 cut(s)	292
SphI	GCATGC	1 cut(s)	1359
SseBI	AGGCCT	1 cut(s)	1182
SsiI	CCGC	4 cut(s)	470, 501, 886, 987
SspI	AATATT	1 cut(s)	1398
SspMI	CTAG	2 cut(s)	293, 1431
StuI	AGGCCT	1 cut(s)	1182
StyD4I	CCNGG	3 cut(s)	832, 1061, 1062
TaaI	ACNGT	2 cut(s)	727, 1165
TaiI	ACGT	3 cut(s)	372, 661, 778
TaqI	TCGA	3 cut(s)	426, 497, 1039
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	5 cut(s)	423, 509, 829, 910, 1294
Tru1I	TTAA	4 cut(s)	443, 1071, 1155, 1480
Tru9I	TTAA	4 cut(s)	443, 1071, 1155, 1480
TscAI	CASTG	1 cut(s)	1323
TseI	GCWGC	2 cut(s)	455, 750
TspDTI	ATGAA	7 cut(s)	48, 287, 303, 522, 882, 1095, 1155
TspMI	CCCGGG	1 cut(s)	1062
TspRI	CASTG	1 cut(s)	1323
VpaK11BI	GGWCC	1 cut(s)	943
XagI	CCTNNNNNAGG	1 cut(s)	1278
XapI	RAATTY	4 cut(s)	133, 515, 627, 1338
XceI	RCATGY	2 cut(s)	622, 1359
XcmI	CCANNNNNNNNNTGG	2 cut(s)	574, 740
XhoI	CTCGAG	1 cut(s)	496
XmaI	CCCGGG	1 cut(s)	1062
XmnI	GAANNNNTTC	2 cut(s)	207, 294
XspI	CTAG	2 cut(s)	293, 1431
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.