FvH4_2g16053

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
14015641 .. 14017931
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16053.t2

Sequence Viewer

Length: 1596 bp
ATGCGCACACCTCAAAGTTATATATACCCGAGCTTTAAGCTTGCCATTTACAATCTGCAGAGCAAAAAGAACTACACAGTACTCATGGGAGAAGTGGTTGTTGAAACGAGCTACATGGGAGATTTACATTTAGCACAAGGTATCGACCATTCCTTTAACAATGCAATGGGTAGAAGCTCACGATCTGCTGCTCAAGTCATTCCCATTACAACTAGTCCTAGTGCAAACGAAGATGGTACAAATCCGGGAGGCGTAGGCGTTGAACTCGACAAGCAGGATGCTTGGCTGCCTCTCACAGAATCCAGAAATGGTAGCACCTTGTCTGTCACGTTTCATCTACTTTGTTCTGGACTTGGGATTCAAGCTCTTTCACTCCCTGCTGCATTTGCCACTCTTGGATGGGCATGGGGATGTATATGCTTGTTACTAGCGTTTGCATGGCAGCTCTACACTATACGGCTCCTAGTTCTATCTCACGAATCTGATACCGGAACTCGTTCTAGTAGATACATCCAACTCGCTATTAAAGCCTTTGGTCAAAAGTTAGGGAAGTTGCTGGTAATGTTCCCGATGATCTATCTATCAAATGGTGCGTGTGTACAACTTATTATCACAGGAGGTCTAACAATGGAGCTTTTCTTCAAAACCGTGTGTAACGATGGGGCTACTGCATATTGTCATCCAATGACTGGTACAGAGTGCTTCTTGGTGTTCACGATCATGGCGATTGTTGTGGCTCAGCTTCCCAACTTGAACTCAATAACTTGGGTCTCTTTGGTTGGTTCTATCACAGCAATTGTATATTGCACTATGATCTGGTCTATTTCAATTGCCAAGGGGAGACCTAGTGGTATATCATACAATCCACCAGAAATGGAGTCTGACATGGATCGATTCGGTCGGATTCTGAATGCGATTGGCATTGTGTTTTTGGCATTCAGAGGTCACAACGTCATTCTTGAAATTCAGGGTACATTGCCATCAAATCCCAAACACCCAATTCATAAGCGAATGTGGAGAGGGGTGATTATATCTTATGCAATCATTGCCATATGCATGGTTCCTCTAGCCATAGCTGGATTTTGGGTACATGGAAACAAGGTATCCTCCTCATCACTTTCAGCAATATTAAGCTCAGCTTCACAACTACCTGGACACAATAAGACCTCAAGGTCTATTCTGGGAGTAATCTGCATTCTTGTAATACTGCACTGCTTAAGTACGTTTCAAATCTATGGCATGGTTGTCTATGACAACTTGGAGTCGAAGTACACTATGAGGAAGAACAGGCCGTGCGCAAGACGGCTTCGAGTAACTTTTCGGGTTTTGTTTGGAGGATTAGCATTCTTTGCAGCGGTGACCTTTCCTTTCTTGGTGAGCCTGGCACCTCTAATTGGAGGTTTGACATTGCCCATGGCTTATGCTTATCCCTGTTTCATGTGGATTGCACTCAAGAAACCGAAGCCAAATGGTTTAATGTGGTGTATTAACGTGGCACTTGGATGCTTGGGACTGGTTTTGAGTGTCGTTTTAGTGGTTGCAGCAACATGGAATTTAGCTCAGAAAGGTCTAAATGCCAATTTCTTCAAGCCCTAG

Protein Analysis

532

Amino Acids

58.0

Weight (kDa)

9.34

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 103 - 369 4.3e-40 Transmembrane amino acid transporter protein
Aa_trans PF01490 422 - 549 8.2e-12 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1171
Acc16I TGCGCA 2 cut(s) 5, 1297
AccB1I GGYRCC 1 cut(s) 1384
AccB7I CCANNNNNTGG 1 cut(s) 689
AciI CCGC 1 cut(s) 1355
AclWI GGATC 1 cut(s) 897
AcsI RAATTY 2 cut(s) 963, 1552
AfaI GTAC 8 cut(s) 81, 238, 600, 694, 973, 1089, 1222, 1271
AfiI CCNNNNNNNGG 2 cut(s) 689, 1394
AflII CTTAAG 1 cut(s) 1216
AgsI TTSAA 9 cut(s) 104, 263, 362, 643, 754, 828, 962, 1229, 1588
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 2 cut(s) 1150, 1380
Alw26I GTCTC 2 cut(s) 775, 835
AlwI GGATC 1 cut(s) 897
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 1 cut(s) 1289
ApeKI GCWGC 6 cut(s) 188, 286, 380, 442, 1352, 1541
ApoI RAATTY 2 cut(s) 963, 1552
Asp700I GAANNNNTTC 1 cut(s) 496
AspLEI GCGC 2 cut(s) 6, 1298
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 3 cut(s) 1036, 1369, 1387
AvaI CYCGRG 1 cut(s) 28
BanI GGYRCC 1 cut(s) 1384
BbvI GCAGC 6 cut(s) 175, 273, 367, 454, 1364, 1553
BccI CCATC 4 cut(s) 227, 393, 653, 988
BceAI ACGGC 3 cut(s) 473, 1276, 1319
BciT130I CCWGG 2 cut(s) 1152, 1382
BciVI GTATCC 1 cut(s) 1114
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 775, 835
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 8 cut(s) 213, 219, 428, 464, 501, 846, 1067, 1594
BfmI CTRYAG 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 1216
BfuI GTATCC 1 cut(s) 1114
BisI GCNGC 6 cut(s) 189, 287, 381, 443, 1353, 1542
BlpI GCTNAGC 2 cut(s) 738, 1135
BlsI GCNGC 6 cut(s) 190, 288, 382, 444, 1354, 1543
BmcAI AGTACT 1 cut(s) 81
Bme1390I CCNGG 3 cut(s) 246, 1152, 1382
BmeT110I CYCGRG 1 cut(s) 28
BmiI GGNNCC 3 cut(s) 461, 1062, 1386
BmrFI CCNGG 3 cut(s) 246, 1152, 1382
BmsI GCATC 2 cut(s) 268, 1493
Bpu1102I GCTNAGC 2 cut(s) 738, 1135
BpuEI CTTGAG 3 cut(s) 177, 1153, 1436
BpuMI CCSGG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 892
BsaI GGTCTC 2 cut(s) 775, 835
BsaJI CCNNGG 2 cut(s) 834, 1413
BsaWI WCCGGW 1 cut(s) 488
BsaXI ACNNNNNCTCC 6 cut(s) 81, 111, 832, 862, 1253, 1283
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 1394
Bse1I ACTGG 2 cut(s) 694, 1518
Bse3DI GCAATG 4 cut(s) 171, 974, 1044, 1406
BseBI CCWGG 2 cut(s) 1152, 1382
BseCI ATCGAT 1 cut(s) 892
BseDI CCNNGG 2 cut(s) 834, 1413
BseGI GGATG 6 cut(s) 283, 404, 416, 510, 679, 1508
BseLI CCNNNNNNNGG 2 cut(s) 689, 1394
BseMI GCAATG 4 cut(s) 171, 974, 1044, 1406
BseMII CTCAG 3 cut(s) 752, 1149, 1574
BseNI ACTGG 2 cut(s) 694, 1518
BseRI GAGGAG 1 cut(s) 1099
BseXI GCAGC 6 cut(s) 175, 273, 367, 454, 1364, 1553
BsgI GTGCAG 1 cut(s) 1193
Bsh1285I CGRYCG 1 cut(s) 901
BshFI GGCC 1 cut(s) 1291
BshNI GGYRCC 1 cut(s) 1384
BshVI ATCGAT 1 cut(s) 892
BsiEI CGRYCG 1 cut(s) 901
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 2 cut(s) 245, 489
BslFI GGGAC 1 cut(s) 1524
BslI CCNNNNNNNGG 2 cut(s) 689, 1394
BsmAI GTCTC 2 cut(s) 775, 835
BsmFI GGGAC 1 cut(s) 1524
BsmI GAATGC 4 cut(s) 916, 935, 1194, 1343
BsnI GGCC 1 cut(s) 1291
Bso31I GGTCTC 2 cut(s) 775, 835
BsoBI CYCGRG 1 cut(s) 28
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 5 cut(s) 182, 573, 717, 813, 889
Bsp1720I GCTNAGC 2 cut(s) 738, 1135
Bsp19I CCATGG 1 cut(s) 1413
BspACI CCGC 1 cut(s) 1355
BspANI GGCC 1 cut(s) 1291
BspCNI CTCAG 3 cut(s) 751, 1148, 1573
BspDI ATCGAT 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 461, 1062, 1386
BspMAI CTGCAG 1 cut(s) 60
BspPI GGATC 1 cut(s) 897
BspT107I GGYRCC 1 cut(s) 1384
BspTI CTTAAG 1 cut(s) 1216
BspTNI GGTCTC 2 cut(s) 775, 835
BsrDI GCAATG 4 cut(s) 171, 974, 1044, 1406
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 2 cut(s) 694, 1518
BssECI CCNNGG 2 cut(s) 834, 1413
BssMI GATC 5 cut(s) 182, 573, 717, 813, 889
BssT1I CCWWGG 2 cut(s) 834, 1413
Bst2UI CCWGG 2 cut(s) 1152, 1382
Bst4CI ACNGT 2 cut(s) 79, 649
BstAFI CTTAAG 1 cut(s) 1216
BstAPI GCANNNNNTGC 2 cut(s) 1046, 1349
BstAUI TGTACA 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 3 cut(s) 738, 1135, 1560
BstDSI CCRYGG 1 cut(s) 1413
BstEII GGTNACC 1 cut(s) 1357
BstF5I GGATG 6 cut(s) 283, 404, 416, 510, 679, 1508
BstHHI GCGC 2 cut(s) 6, 1298
BstKTI GATC 5 cut(s) 185, 576, 720, 816, 892
BstMAI GTCTC 2 cut(s) 775, 835
BstMBI GATC 5 cut(s) 182, 573, 717, 813, 889
BstMCI CGRYCG 1 cut(s) 901
BstMWI GCNNNNNNNGC 4 cut(s) 386, 527, 1046, 1349
BstNI CCWGG 2 cut(s) 1152, 1382
BstPI GGTNACC 1 cut(s) 1357
BstSCI CCNGG 3 cut(s) 244, 1150, 1380
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 6 cut(s) 175, 273, 367, 454, 1364, 1553
BstXI CCANNNNNNTGG 1 cut(s) 1057
Bsu15I ATCGAT 1 cut(s) 892
BsuI GTATCC 1 cut(s) 1114
BsuRI GGCC 1 cut(s) 1291
BsuTUI ATCGAT 1 cut(s) 892
BtgI CCRYGG 1 cut(s) 1413
BtsCI GGATG 6 cut(s) 283, 404, 416, 510, 679, 1508
BtsI GCAGTG 1 cut(s) 1210
BtsIMutI CAGTG 1 cut(s) 1210
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 2 cut(s) 6, 1298
ClaI ATCGAT 1 cut(s) 892
Csp6I GTAC 8 cut(s) 80, 237, 599, 693, 972, 1088, 1221, 1270
CviQI GTAC 8 cut(s) 80, 237, 599, 693, 972, 1088, 1221, 1270
DdeI CTNAG 3 cut(s) 738, 1135, 1560
DpnI GATC 5 cut(s) 184, 575, 719, 815, 891
DpnII GATC 5 cut(s) 182, 573, 717, 813, 889
DrdI GACNNNNNNGTC 1 cut(s) 1171
DseDI GACNNNNNNGTC 1 cut(s) 1171
Eco130I CCWWGG 2 cut(s) 834, 1413
Eco31I GGTCTC 2 cut(s) 775, 835
Eco88I CYCGRG 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 1357
EcoO65I GGTNACC 1 cut(s) 1357
EcoRII CCWGG 2 cut(s) 1150, 1380
EcoT14I CCWWGG 2 cut(s) 834, 1413
EcoT22I ATGCAT 1 cut(s) 1058
ErhI CCWWGG 2 cut(s) 834, 1413
FalI AAGNNNNNCTT 2 cut(s) 1123, 1155
FaqI GGGAC 1 cut(s) 1524
FauNDI CATATG 1 cut(s) 1052
Fnu4HI GCNGC 6 cut(s) 189, 287, 381, 443, 1353, 1542
FokI GGATG 6 cut(s) 290, 411, 423, 497, 666, 1515
Fsp4HI GCNGC 6 cut(s) 189, 287, 381, 443, 1353, 1542
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 8 cut(s) 213, 219, 428, 464, 501, 846, 1067, 1594
FspI TGCGCA 2 cut(s) 5, 1297
GlaI GCGC 2 cut(s) 5, 1297
GluI GCNGC 6 cut(s) 189, 287, 381, 443, 1353, 1542
HaeIII GGCC 1 cut(s) 1291
HapII CCGG 2 cut(s) 245, 489
HhaI GCGC 2 cut(s) 6, 1298
Hin6I GCGC 2 cut(s) 4, 1296
HinP1I GCGC 2 cut(s) 4, 1296
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 7 cut(s) 299, 358, 479, 878, 894, 904, 1262
HpaII CCGG 2 cut(s) 245, 489
HphI GGTGA 3 cut(s) 1036, 1369, 1387
Hpy166II GTNNAC 3 cut(s) 599, 714, 1272
Hpy188I TCNGA 6 cut(s) 484, 883, 903, 909, 941, 1563
Hpy188III TCNNGA 8 cut(s) 180, 303, 348, 476, 568, 715, 959, 1453
Hpy8I GTNNAC 3 cut(s) 599, 714, 1272
HpyCH4III ACNGT 2 cut(s) 79, 649
HpyCH4IV ACGT 4 cut(s) 329, 951, 1223, 1491
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 527, 1046, 1349
HpyF3I CTNAG 3 cut(s) 738, 1135, 1560
HpySE526I ACGT 4 cut(s) 329, 951, 1223, 1491
HspAI GCGC 2 cut(s) 4, 1296
Kzo9I GATC 5 cut(s) 182, 573, 717, 813, 889
LmnI GCTCC 2 cut(s) 465, 631
Lsp1109I GCAGC 6 cut(s) 175, 273, 367, 454, 1364, 1553
LweI GCATC 2 cut(s) 268, 1493
MaeI CTAG 8 cut(s) 213, 219, 428, 464, 501, 846, 1067, 1594
MaeII ACGT 4 cut(s) 329, 951, 1223, 1491
MaeIII GTNAC 6 cut(s) 325, 423, 653, 944, 1312, 1357
MalI GATC 5 cut(s) 184, 575, 719, 815, 891
MboI GATC 5 cut(s) 182, 573, 717, 813, 889
MboII GAAGA 4 cut(s) 242, 631, 1294, 1576
MfeI CAATTG 2 cut(s) 795, 828
MluCI AATT 7 cut(s) 795, 828, 963, 999, 1392, 1552, 1579
MlyI GAGTC 2 cut(s) 887, 1271
MmeI TCCRAC 2 cut(s) 538, 881
Mph1103I ATGCAT 1 cut(s) 1058
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 7 cut(s) 36, 156, 525, 1130, 1217, 1475, 1488
MslI CAYNNNNRTG 4 cut(s) 409, 719, 1055, 1501
MspA1I CMGCKG 1 cut(s) 1355
MspCI CTTAAG 1 cut(s) 1216
MspI CCGG 2 cut(s) 245, 489
MspR9I CCNGG 3 cut(s) 246, 1152, 1382
MunI CAATTG 2 cut(s) 795, 828
Mva1269I GAATGC 4 cut(s) 916, 935, 1194, 1343
MvaI CCWGG 2 cut(s) 1152, 1382
MwoI GCNNNNNNNGC 4 cut(s) 386, 527, 1046, 1349
NciI CCSGG 1 cut(s) 246
NcoI CCATGG 1 cut(s) 1413
NdeI CATATG 1 cut(s) 1052
NdeII GATC 5 cut(s) 182, 573, 717, 813, 889
NlaIV GGNNCC 3 cut(s) 461, 1062, 1386
NmuCI GTSAC 3 cut(s) 325, 944, 1357
NsbI TGCGCA 2 cut(s) 5, 1297
NsiI ATGCAT 1 cut(s) 1058
PcsI WCGNNNNNNNCGW 1 cut(s) 722
PctI GAATGC 4 cut(s) 916, 935, 1194, 1343
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 5 cut(s) 299, 358, 479, 894, 904
PflMI CCANNNNNTGG 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 6 cut(s) 190, 288, 382, 444, 1354, 1543
PleI GAGTC 2 cut(s) 886, 1270
PpsI GAGTC 2 cut(s) 886, 1270
Psp6I CCWGG 2 cut(s) 1150, 1380
PspEI GGTNACC 1 cut(s) 1357
PspGI CCWGG 2 cut(s) 1150, 1380
PspN4I GGNNCC 3 cut(s) 461, 1062, 1386
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 8 cut(s) 81, 238, 600, 694, 973, 1089, 1222, 1271
RsaNI GTAC 8 cut(s) 80, 237, 599, 693, 972, 1088, 1221, 1270
RseI CAYNNNNRTG 4 cut(s) 409, 719, 1055, 1501
SaqAI TTAA 7 cut(s) 36, 156, 525, 1130, 1217, 1475, 1488
SatI GCNGC 6 cut(s) 189, 287, 381, 443, 1353, 1542
Sau3AI GATC 5 cut(s) 182, 573, 717, 813, 889
ScaI AGTACT 1 cut(s) 81
SchI GAGTC 2 cut(s) 887, 1271
ScrFI CCNGG 3 cut(s) 246, 1152, 1382
SfaNI GCATC 2 cut(s) 268, 1493
SfcI CTRYAG 1 cut(s) 56
SmiMI CAYNNNNRTG 4 cut(s) 409, 719, 1055, 1501
SmlI CTYRAG 4 cut(s) 192, 1168, 1216, 1451
SmoI CTYRAG 4 cut(s) 192, 1168, 1216, 1451
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 7 cut(s) 795, 828, 963, 999, 1392, 1552, 1579
SsiI CCGC 1 cut(s) 1355
SspI AATATT 1 cut(s) 1128
SspMI CTAG 8 cut(s) 213, 219, 428, 464, 501, 846, 1067, 1594
StyD4I CCNGG 3 cut(s) 244, 1150, 1380
StyI CCWWGG 2 cut(s) 834, 1413
TaaI ACNGT 2 cut(s) 79, 649
TaiI ACGT 4 cut(s) 332, 954, 1226, 1494
TaqI TCGA 5 cut(s) 144, 267, 892, 1265, 1309
TaqII GACCGA 1 cut(s) 887
TasI AATT 7 cut(s) 795, 828, 963, 999, 1392, 1552, 1579
TatI WGTACW 3 cut(s) 79, 598, 1269
TfiI GAWTC 5 cut(s) 299, 358, 479, 894, 904
Tru1I TTAA 7 cut(s) 36, 156, 525, 1130, 1217, 1475, 1488
Tru9I TTAA 7 cut(s) 36, 156, 525, 1130, 1217, 1475, 1488
TscAI CASTG 1 cut(s) 1217
TseFI GTSAC 3 cut(s) 325, 944, 1357
TseI GCWGC 6 cut(s) 188, 286, 380, 442, 1352, 1541
Tsp45I GTSAC 3 cut(s) 325, 944, 1357
TspDTI ATGAA 3 cut(s) 323, 992, 1426
TspRI CASTG 1 cut(s) 1217
Van91I CCANNNNNTGG 1 cut(s) 689
Vha464I CTTAAG 1 cut(s) 1216
XapI RAATTY 2 cut(s) 963, 1552
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 8 cut(s) 213, 219, 428, 464, 501, 846, 1067, 1594
ZrmI AGTACT 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.