Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000685.1

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

38133 .. 39756

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000685.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgttcccgatgatctatctatcaaatggtgcttgtgtccaacttattatcgcaggaggtctaacaatggagcttttcttcaaaaccgtgtgtaacgatggggctactacttattgtcatccaatgactggtacagagtgcttcttggtgttcatgatcatggctattattgtggctcagtttcccaacttgaactccatagcttgggtctctttgattggttctatcacagcaattgtatattgcaccatcatctggtctatttcagttggcaagggcagacctaatggtatatcatacaatccaccagaaatggagtctaatatggatagatttggtcggatactgaatgcaattgggattgtgtttttggcattcagaggtcacaacgtcattcttgaaatacagggaacattgccatcagagccaaaacacccaattcataagcgaatgtggagaggggtgattatatcgtatgctatcattgccatatgcttgcttcctctagccatagctggattttgggcacatggaaacaaggtgccctcctcatcagttttatcaatatctgcaatactaggctcagctgcacaactacctggacacaataacaactcaaggtatgttctgggagtaatctgcattcttgtaataatacactgcttaagcacatttcaaatctatggcatggtagcctttgacaacttggagatgaagtacactatgaggaagaacaagccgtgtccaagatggcttcgagtagctttccgttttttgtttggaggattggcattctttatagcggtgacctttccgttcttcgtaagcctggcacctctaattggaggtttgacattgcctatggcttatgcttatccatgtttcatgtggatcacactcaagaaaccgaagccgaaaggtttaatgtggtgtattaacgtgggacttggatgcttgggactggttttgagtgttgttttagtggttgcagcagcatggaatttagctcagaaaggtctaaatgccaatttcttcaagccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

347

Amino Acids

38.15

Weight (kDa)

9.44

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	541, 832
AccB7I	CCANNNNNTGG	3 cut(s)	128, 204, 255
AciI	CCGC	1 cut(s)	803
AclWI	GGATC	1 cut(s)	899
AcsI	RAATTY	1 cut(s)	1000
AfaI	GTAC	2 cut(s)	133, 719
AfiI	CCNNNNNNNGG	4 cut(s)	128, 204, 255, 842
AflII	CTTAAG	1 cut(s)	664
AgsI	TTSAA	5 cut(s)	82, 193, 401, 677, 1036
AjnI	CCWGG	2 cut(s)	598, 828
AluBI	AGCT	6 cut(s)	73, 203, 515, 587, 764, 1007
AluI	AGCT	6 cut(s)	73, 203, 515, 587, 764, 1007
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	899
ApeKI	GCWGC	3 cut(s)	587, 989, 992
ApoI	RAATTY	1 cut(s)	1000
AsuHPI	GGTGA	2 cut(s)	475, 817
BaeGI	GKGCMC	2 cut(s)	529, 546
BanI	GGYRCC	2 cut(s)	541, 832
BbvI	GCAGC	3 cut(s)	574, 1001, 1004
BccI	CCATC	4 cut(s)	92, 257, 427, 744
BceAI	ACGGC	1 cut(s)	724
BciT130I	CCWGG	2 cut(s)	600, 830
BciVI	GTATCC	1 cut(s)	336
BclI	TGATCA	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	3 cut(s)	506, 578, 1042
BfrI	CTTAAG	1 cut(s)	664
BfuI	GTATCC	1 cut(s)	336
BisI	GCNGC	3 cut(s)	588, 990, 993
BlpI	GCTNAGC	1 cut(s)	583
BlsI	GCNGC	3 cut(s)	589, 991, 994
Bme1390I	CCNGG	2 cut(s)	600, 830
BmiI	GGNNCC	2 cut(s)	543, 834
BmrFI	CCNGG	2 cut(s)	600, 830
BmsI	GCATC	1 cut(s)	941
Bpu1102I	GCTNAGC	1 cut(s)	583
BpuEI	CTTGAG	2 cut(s)	601, 884
BsaI	GGTCTC	1 cut(s)	214
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 701, 731
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 204, 255, 842
Bse1I	ACTGG	2 cut(s)	133, 966
Bse3DI	GCAATG	3 cut(s)	413, 483, 854
BseBI	CCWGG	2 cut(s)	600, 830
BseGI	GGATG	2 cut(s)	118, 956
BseLI	CCNNNNNNNGG	4 cut(s)	128, 204, 255, 842
BseMI	GCAATG	3 cut(s)	413, 483, 854
BseMII	CTCAG	3 cut(s)	191, 597, 1022
BseNI	ACTGG	2 cut(s)	133, 966
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	2 cut(s)	529, 546
BseXI	GCAGC	3 cut(s)	574, 1001, 1004
BsgI	GTGCAG	1 cut(s)	573
BshNI	GGYRCC	2 cut(s)	541, 832
BslFI	GGGAC	2 cut(s)	957, 972
BslI	CCNNNNNNNGG	4 cut(s)	128, 204, 255, 842
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	957, 972
BsmI	GAATGC	4 cut(s)	355, 374, 642, 791
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	529, 546
Bsp143I	GATC	3 cut(s)	12, 156, 891
Bsp1720I	GCTNAGC	1 cut(s)	583
BspACI	CCGC	1 cut(s)	803
BspCNI	CTCAG	3 cut(s)	190, 596, 1021
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	543, 834
BspPI	GGATC	1 cut(s)	899
BspT107I	GGYRCC	2 cut(s)	541, 832
BspTI	CTTAAG	1 cut(s)	664
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	3 cut(s)	413, 483, 854
BsrI	ACTGG	2 cut(s)	133, 966
BssMI	GATC	3 cut(s)	12, 156, 891
Bst2UI	CCWGG	2 cut(s)	600, 830
Bst4CI	ACNGT	1 cut(s)	88
BstAFI	CTTAAG	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	177, 583, 1008
BstEII	GGTNACC	1 cut(s)	805
BstF5I	GGATG	2 cut(s)	118, 956
BstKTI	GATC	3 cut(s)	15, 159, 894
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	3 cut(s)	12, 156, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 485
BstNI	CCWGG	2 cut(s)	600, 830
BstPI	GGTNACC	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	598, 828
BstSLI	GKGCMC	2 cut(s)	529, 546
BstV1I	GCAGC	3 cut(s)	574, 1001, 1004
BsuI	GTATCC	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	118, 956
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	1 cut(s)	497
CciI	TCATGA	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	132, 718
CviAII	CATG	7 cut(s)	154, 160, 530, 688, 879, 886, 996
CviQI	GTAC	2 cut(s)	132, 718
DdeI	CTNAG	3 cut(s)	177, 583, 1008
DpnI	GATC	3 cut(s)	14, 158, 893
DpnII	GATC	3 cut(s)	12, 156, 891
Eco31I	GGTCTC	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	805
EcoO65I	GGTNACC	1 cut(s)	805
EcoRII	CCWGG	2 cut(s)	598, 828
FaeI	CATG	7 cut(s)	157, 163, 533, 691, 882, 889, 999
FaqI	GGGAC	2 cut(s)	957, 972
FatI	CATG	7 cut(s)	153, 159, 529, 687, 878, 885, 995
FauNDI	CATATG	1 cut(s)	491
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	588, 990, 993
FokI	GGATG	2 cut(s)	105, 963
Fsp4HI	GCNGC	3 cut(s)	588, 990, 993
FspBI	CTAG	3 cut(s)	506, 578, 1042
GluI	GCNGC	3 cut(s)	588, 990, 993
Hin1II	CATG	7 cut(s)	157, 163, 533, 691, 882, 889, 999
HinfI	GANTC	1 cut(s)	317
HphI	GGTGA	2 cut(s)	475, 817
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	4 cut(s)	342, 380, 424, 1011
Hpy188III	TCNNGA	4 cut(s)	7, 154, 398, 901
Hpy8I	GTNNAC	1 cut(s)	720
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	2 cut(s)	390, 939
HpyCH4V	TGCA	6 cut(s)	246, 353, 572, 590, 642, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 485
HpyF3I	CTNAG	3 cut(s)	177, 583, 1008
HpySE526I	ACGT	2 cut(s)	390, 939
Hsp92II	CATG	7 cut(s)	157, 163, 533, 691, 882, 889, 999
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	12, 156, 891
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	3 cut(s)	574, 1001, 1004
LweI	GCATC	1 cut(s)	941
MaeI	CTAG	3 cut(s)	506, 578, 1042
MaeII	ACGT	2 cut(s)	390, 939
MaeIII	GTNAC	3 cut(s)	92, 383, 805
MalI	GATC	3 cut(s)	14, 158, 893
MboI	GATC	3 cut(s)	12, 156, 891
MboII	GAAGA	4 cut(s)	70, 742, 811, 1024
MfeI	CAATTG	2 cut(s)	234, 354
MhlI	GDGCHC	2 cut(s)	529, 546
MluCI	AATT	6 cut(s)	234, 354, 438, 840, 1000, 1027
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	64, 320
MseI	TTAA	3 cut(s)	665, 923, 936
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	587
MspCI	CTTAAG	1 cut(s)	664
MspR9I	CCNGG	2 cut(s)	600, 830
MunI	CAATTG	2 cut(s)	234, 354
Mva1269I	GAATGC	4 cut(s)	355, 374, 642, 791
MvaI	CCWGG	2 cut(s)	600, 830
MwoI	GCNNNNNNNGC	2 cut(s)	424, 485
NdeI	CATATG	1 cut(s)	491
NdeII	GATC	3 cut(s)	12, 156, 891
NlaIII	CATG	7 cut(s)	157, 163, 533, 691, 882, 889, 999
NlaIV	GGNNCC	2 cut(s)	543, 834
NmuCI	GTSAC	2 cut(s)	383, 805
PagI	TCATGA	1 cut(s)	153
PctI	GAATGC	4 cut(s)	355, 374, 642, 791
PflMI	CCANNNNNTGG	3 cut(s)	128, 204, 255
PkrI	GCNGC	3 cut(s)	589, 991, 994
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	598, 828
PspEI	GGTNACC	1 cut(s)	805
PspGI	CCWGG	2 cut(s)	598, 828
PspN4I	GGNNCC	2 cut(s)	543, 834
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	133, 719
RsaNI	GTAC	2 cut(s)	132, 718
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	665, 923, 936
SatI	GCNGC	3 cut(s)	588, 990, 993
Sau3AI	GATC	3 cut(s)	12, 156, 891
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	600, 830
SduI	GDGCHC	2 cut(s)	529, 546
SfaNI	GCATC	1 cut(s)	941
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	3 cut(s)	616, 664, 899
SmoI	CTYRAG	3 cut(s)	616, 664, 899
Sse9I	AATT	6 cut(s)	234, 354, 438, 840, 1000, 1027
SsiI	CCGC	1 cut(s)	803
SspMI	CTAG	3 cut(s)	506, 578, 1042
StyD4I	CCNGG	2 cut(s)	598, 828
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	2 cut(s)	393, 942
TaqI	TCGA	1 cut(s)	757
TasI	AATT	6 cut(s)	234, 354, 438, 840, 1000, 1027
TatI	WGTACW	1 cut(s)	717
Tru1I	TTAA	3 cut(s)	665, 923, 936
Tru9I	TTAA	3 cut(s)	665, 923, 936
TscAI	CASTG	1 cut(s)	665
TseFI	GTSAC	2 cut(s)	383, 805
TseI	GCWGC	3 cut(s)	587, 989, 992
Tsp45I	GTSAC	2 cut(s)	383, 805
TspDTI	ATGAA	4 cut(s)	142, 431, 728, 874
TspGWI	ACGGA	2 cut(s)	758, 804
TspRI	CASTG	1 cut(s)	665
Van91I	CCANNNNNTGG	3 cut(s)	128, 204, 255
Vha464I	CTTAAG	1 cut(s)	664
XapI	RAATTY	1 cut(s)	1000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	885
XspI	CTAG	3 cut(s)	506, 578, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.