Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001719.1

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

19614 .. 22507

Gene Structure 2894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001719.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

atggacccttcctttaacaccgccatgggtacaagctcacggtctgctgctctagtcattcccatgacaattagttccagtgcaaacgaagatggtacaaatccaggaggcgtaggtggtgaactcgataagcaggatgcttggctgcctctcacagaatccaggaatggcagtacctattccgtgacgtttcatctagtttgttcaggaattgggactcaagctctttcactccctgttgcattcgccgctcttggatgggcatggggatgtatatgcttgttactagcgtttgcatggcagctctacactatacggctccttgtactatcccacgaatctgataccggaactcgttatagtagatacctccaacttgctattagagccttcggtcaaaagctagggaagttgctagtaatgttcccgatgatctatctatcaaatggtgcttgtgtccaacttattatcgcaggaggtctaacaatggagcttttcttcaaaaccgtgtgtaacgatggggctactacttattgtcatccaatgactggtacagagtgcttcttggtgttcatgatcatggctattattgtggctcagtttcccaacttgaactccatagcttgggtctctttgattggttctatcacagcaattgtatattgcaccatcatctggtctatttcagttggcaagggcagacctaatggtatatcatacaatccaccagaaatggagtctaatatggatagatttggtcggatactgaatgcaattgggattgtgtttttggcattcagaggtcacaacgtcattcttgaaatacagggaacattgccatcagagccaaaacacccaattcataagcgaatgtggagaggggtgattatatcgtatgctatcattgccatatgcttgcttcctctagccatagctggattttgggcacatggaaacaaggtgccctcctcatcagttttatcaatatctgcaatactaggctcagctgcacaactacctggacacaataacaactcaaggtatgttctgggagtaatctgcattcttgtaataatacactgcttaagcacatttcaaatctatggcatggtagcctttgacaacttggagatgaagtacactatgaggaagaacaagccgtgtccaagatggcttcgagtagctttccgttttttgtttggaggattggccttctttatagcggtgacctttccgttcttcgtaagcctggcacctctaattggaggtttgacattgcctatggcttatgcttatccgtgtttcatgtggatcacactcaagaaaccgaagccgaaaggtttaatgtggtgtattaacgtgggacttggatgcttgggactggttttgagtgttgttttagtggttgcagcagcatggaatttagctcagaaaggtctaaatgccaatttcttcaagccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

487

Amino Acids

53.11

Weight (kDa)

9.23

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	961, 1252
AccB7I	CCANNNNNTGG	3 cut(s)	548, 624, 675
AccBSI	CCGCTC	1 cut(s)	251
AciI	CCGC	3 cut(s)	21, 249, 1223
AclWI	GGATC	1 cut(s)	1319
AcsI	RAATTY	1 cut(s)	1420
AfaI	GTAC	6 cut(s)	31, 97, 175, 327, 553, 1139
AfiI	CCNNNNNNNGG	4 cut(s)	548, 624, 675, 1262
AflII	CTTAAG	1 cut(s)	1084
AgsI	TTSAA	5 cut(s)	502, 613, 821, 1097, 1456
AjnI	CCWGG	4 cut(s)	103, 161, 1018, 1248
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	1 cut(s)	1319
AoxI	GGCC	1 cut(s)	1209
ApeKI	GCWGC	6 cut(s)	47, 145, 301, 1007, 1409, 1412
ApoI	RAATTY	1 cut(s)	1420
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	131, 895, 1237
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	949, 966
BanI	GGYRCC	2 cut(s)	961, 1252
BbvI	GCAGC	6 cut(s)	34, 132, 313, 994, 1421, 1424
BccI	CCATC	6 cut(s)	86, 252, 512, 677, 847, 1164
BceAI	ACGGC	2 cut(s)	332, 1144
BciT130I	CCWGG	4 cut(s)	105, 163, 1020, 1250
BciVI	GTATCC	1 cut(s)	756
BclI	TGATCA	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	8 cut(s)	53, 197, 287, 404, 416, 926, 998, 1462
BfrI	CTTAAG	1 cut(s)	1084
BfuI	GTATCC	1 cut(s)	756
BisI	GCNGC	7 cut(s)	48, 146, 249, 302, 1008, 1410, 1413
BlpI	GCTNAGC	1 cut(s)	1003
BlsI	GCNGC	7 cut(s)	49, 147, 250, 303, 1009, 1411, 1414
Bme1390I	CCNGG	4 cut(s)	105, 163, 1020, 1250
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	6, 320, 963, 1254
BmrFI	CCNGG	4 cut(s)	105, 163, 1020, 1250
BmsI	GCATC	2 cut(s)	127, 1361
Bpu1102I	GCTNAGC	1 cut(s)	1003
BpuEI	CTTGAG	3 cut(s)	204, 1021, 1304
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	4 cut(s)	599, 629, 1121, 1151
Bsc4I	CCNNNNNNNGG	4 cut(s)	548, 624, 675, 1262
Bse1I	ACTGG	3 cut(s)	78, 553, 1386
Bse3DI	GCAATG	3 cut(s)	833, 903, 1274
BseBI	CCWGG	4 cut(s)	105, 163, 1020, 1250
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	5 cut(s)	142, 263, 275, 538, 1376
BseLI	CCNNNNNNNGG	4 cut(s)	548, 624, 675, 1262
BseMI	GCAATG	3 cut(s)	833, 903, 1274
BseMII	CTCAG	3 cut(s)	611, 1017, 1442
BseNI	ACTGG	3 cut(s)	78, 553, 1386
BseRI	GAGGAG	1 cut(s)	958
BseSI	GKGCMC	2 cut(s)	949, 966
BseXI	GCAGC	6 cut(s)	34, 132, 313, 994, 1421, 1424
BsgI	GTGCAG	1 cut(s)	993
BshFI	GGCC	1 cut(s)	1211
BshNI	GGYRCC	2 cut(s)	961, 1252
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	3 cut(s)	229, 1377, 1392
BslI	CCNNNNNNNGG	4 cut(s)	548, 624, 675, 1262
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	3 cut(s)	229, 1377, 1392
BsmI	GAATGC	4 cut(s)	242, 775, 794, 1062
BsnI	GGCC	1 cut(s)	1211
Bso31I	GGTCTC	1 cut(s)	634
Bsp1286I	GDGCHC	2 cut(s)	949, 966
Bsp143I	GATC	3 cut(s)	432, 576, 1311
Bsp1720I	GCTNAGC	1 cut(s)	1003
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	21, 249, 1223
BspANI	GGCC	1 cut(s)	1211
BspCNI	CTCAG	3 cut(s)	610, 1016, 1441
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	4 cut(s)	6, 320, 963, 1254
BspPI	GGATC	1 cut(s)	1319
BspT107I	GGYRCC	2 cut(s)	961, 1252
BspTI	CTTAAG	1 cut(s)	1084
BspTNI	GGTCTC	1 cut(s)	634
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	3 cut(s)	833, 903, 1274
BsrI	ACTGG	3 cut(s)	78, 553, 1386
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	3 cut(s)	432, 576, 1311
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	4 cut(s)	105, 163, 1020, 1250
Bst4CI	ACNGT	2 cut(s)	42, 508
BstAFI	CTTAAG	1 cut(s)	1084
BstC8I	GCNNGC	1 cut(s)	917
BstDEI	CTNAG	3 cut(s)	597, 1003, 1428
BstDSI	CCRYGG	1 cut(s)	24
BstEII	GGTNACC	1 cut(s)	1225
BstF5I	GGATG	5 cut(s)	142, 263, 275, 538, 1376
BstKTI	GATC	3 cut(s)	435, 579, 1314
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	3 cut(s)	432, 576, 1311
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 386, 844, 905
BstNI	CCWGG	4 cut(s)	105, 163, 1020, 1250
BstPI	GGTNACC	1 cut(s)	1225
BstSCI	CCNGG	4 cut(s)	103, 161, 1018, 1248
BstSLI	GKGCMC	2 cut(s)	949, 966
BstV1I	GCAGC	6 cut(s)	34, 132, 313, 994, 1421, 1424
BsuI	GTATCC	1 cut(s)	756
BsuRI	GGCC	1 cut(s)	1211
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	5 cut(s)	142, 263, 275, 538, 1376
BtsI	GCAGTG	1 cut(s)	1078
BtsIMutI	CAGTG	2 cut(s)	85, 1078
Cac8I	GCNNGC	1 cut(s)	917
CciI	TCATGA	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	6 cut(s)	30, 96, 174, 326, 552, 1138
CviQI	GTAC	6 cut(s)	30, 96, 174, 326, 552, 1138
DdeI	CTNAG	3 cut(s)	597, 1003, 1428
DpnI	GATC	3 cut(s)	434, 578, 1313
DpnII	GATC	3 cut(s)	432, 576, 1311
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	4
Eco91I	GGTNACC	1 cut(s)	1225
EcoO65I	GGTNACC	1 cut(s)	1225
EcoRII	CCWGG	4 cut(s)	103, 161, 1018, 1248
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaqI	GGGAC	3 cut(s)	229, 1377, 1392
FauNDI	CATATG	1 cut(s)	911
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	7 cut(s)	48, 146, 249, 302, 1008, 1410, 1413
FokI	GGATG	5 cut(s)	149, 270, 282, 525, 1383
Fsp4HI	GCNGC	7 cut(s)	48, 146, 249, 302, 1008, 1410, 1413
FspBI	CTAG	8 cut(s)	53, 197, 287, 404, 416, 926, 998, 1462
GluI	GCNGC	7 cut(s)	48, 146, 249, 302, 1008, 1410, 1413
HaeIII	GGCC	1 cut(s)	1211
HapII	CCGG	1 cut(s)	348
HinfI	GANTC	4 cut(s)	158, 217, 338, 737
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	131, 895, 1237
Hpy166II	GTNNAC	2 cut(s)	122, 1140
Hpy188I	TCNGA	5 cut(s)	343, 762, 800, 844, 1431
Hpy188III	TCNNGA	5 cut(s)	207, 427, 574, 818, 1321
Hpy8I	GTNNAC	2 cut(s)	122, 1140
HpyAV	CCTTC	3 cut(s)	18, 400, 1222
HpyCH4III	ACNGT	2 cut(s)	42, 508
HpyCH4IV	ACGT	3 cut(s)	188, 810, 1359
HpyCH4V	TGCA	9 cut(s)	83, 242, 296, 666, 773, 992, 1010, 1062, 1409
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 386, 844, 905
HpyF3I	CTNAG	3 cut(s)	597, 1003, 1428
HpySE526I	ACGT	3 cut(s)	188, 810, 1359
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	432, 576, 1311
LmnI	GCTCC	2 cut(s)	324, 490
Lsp1109I	GCAGC	6 cut(s)	34, 132, 313, 994, 1421, 1424
LweI	GCATC	2 cut(s)	127, 1361
MaeI	CTAG	8 cut(s)	53, 197, 287, 404, 416, 926, 998, 1462
MaeII	ACGT	3 cut(s)	188, 810, 1359
MaeIII	GTNAC	5 cut(s)	184, 282, 512, 803, 1225
MalI	GATC	3 cut(s)	434, 578, 1313
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	3 cut(s)	432, 576, 1311
MboII	GAAGA	5 cut(s)	101, 490, 1162, 1231, 1444
MfeI	CAATTG	2 cut(s)	654, 774
MhlI	GDGCHC	2 cut(s)	949, 966
MluCI	AATT	8 cut(s)	69, 210, 654, 774, 858, 1260, 1420, 1447
MlyI	GAGTC	2 cut(s)	211, 746
MmeI	TCCRAC	3 cut(s)	397, 484, 740
MseI	TTAA	4 cut(s)	15, 1085, 1343, 1356
MslI	CAYNNNNRTG	4 cut(s)	23, 62, 268, 578
MspA1I	CMGCKG	1 cut(s)	1007
MspCI	CTTAAG	1 cut(s)	1084
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	4 cut(s)	105, 163, 1020, 1250
MunI	CAATTG	2 cut(s)	654, 774
Mva1269I	GAATGC	4 cut(s)	242, 775, 794, 1062
MvaI	CCWGG	4 cut(s)	105, 163, 1020, 1250
MwoI	GCNNNNNNNGC	4 cut(s)	248, 386, 844, 905
NcoI	CCATGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	911
NdeII	GATC	3 cut(s)	432, 576, 1311
NlaIV	GGNNCC	4 cut(s)	6, 320, 963, 1254
NmuCI	GTSAC	3 cut(s)	184, 803, 1225
PagI	TCATGA	1 cut(s)	573
PctI	GAATGC	4 cut(s)	242, 775, 794, 1062
PfeI	GAWTC	2 cut(s)	158, 338
PflMI	CCANNNNNTGG	3 cut(s)	548, 624, 675
PfoI	TCCNGGA	2 cut(s)	103, 161
PkrI	GCNGC	7 cut(s)	49, 147, 250, 303, 1009, 1411, 1414
PleI	GAGTC	2 cut(s)	211, 745
PpsI	GAGTC	2 cut(s)	211, 745
Psp6I	CCWGG	4 cut(s)	103, 161, 1018, 1248
PspEI	GGTNACC	1 cut(s)	1225
PspGI	CCWGG	4 cut(s)	103, 161, 1018, 1248
PspN4I	GGNNCC	4 cut(s)	6, 320, 963, 1254
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	6 cut(s)	31, 97, 175, 327, 553, 1139
RsaNI	GTAC	6 cut(s)	30, 96, 174, 326, 552, 1138
RseI	CAYNNNNRTG	4 cut(s)	23, 62, 268, 578
SaqAI	TTAA	4 cut(s)	15, 1085, 1343, 1356
SatI	GCNGC	7 cut(s)	48, 146, 249, 302, 1008, 1410, 1413
Sau3AI	GATC	3 cut(s)	432, 576, 1311
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	211, 746
ScrFI	CCNGG	4 cut(s)	105, 163, 1020, 1250
SduI	GDGCHC	2 cut(s)	949, 966
SfaNI	GCATC	2 cut(s)	127, 1361
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	4 cut(s)	23, 62, 268, 578
SmlI	CTYRAG	4 cut(s)	219, 1036, 1084, 1319
SmoI	CTYRAG	4 cut(s)	219, 1036, 1084, 1319
Sse9I	AATT	8 cut(s)	69, 210, 654, 774, 858, 1260, 1420, 1447
SsiI	CCGC	3 cut(s)	21, 249, 1223
SspMI	CTAG	8 cut(s)	53, 197, 287, 404, 416, 926, 998, 1462
StyD4I	CCNGG	4 cut(s)	103, 161, 1018, 1248
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	42, 508
TaiI	ACGT	3 cut(s)	191, 813, 1362
TaqI	TCGA	2 cut(s)	126, 1177
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	8 cut(s)	69, 210, 654, 774, 858, 1260, 1420, 1447
TatI	WGTACW	2 cut(s)	325, 1137
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	158, 338
Tru1I	TTAA	4 cut(s)	15, 1085, 1343, 1356
Tru9I	TTAA	4 cut(s)	15, 1085, 1343, 1356
TscAI	CASTG	2 cut(s)	85, 1085
TseFI	GTSAC	3 cut(s)	184, 803, 1225
TseI	GCWGC	6 cut(s)	47, 145, 301, 1007, 1409, 1412
Tsp45I	GTSAC	3 cut(s)	184, 803, 1225
TspDTI	ATGAA	5 cut(s)	182, 562, 851, 1148, 1294
TspGWI	ACGGA	4 cut(s)	172, 1178, 1224, 1287
TspRI	CASTG	2 cut(s)	85, 1085
Van91I	CCANNNNNTGG	3 cut(s)	548, 624, 675
Vha464I	CTTAAG	1 cut(s)	1084
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	1420
XspI	CTAG	8 cut(s)	53, 197, 287, 404, 416, 926, 998, 1462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.