FvH4_2g16050

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
13996782 .. 13999746
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16050.t1

Sequence Viewer

Length: 1530 bp
ATGGCAGGGATGGAAGAAGTGGCTGATGAAGCAAATCGGAGGCCAGCCGATAGGGTTCATTCGTTTAACAGCACAAGTAGAAGGTCTGATTCTGCACAAGTCATTCCCATTACAAGTGCTACTGCTAGTCCTACAAGTGATCATTTGGATGCTAATTACGACATCGATAATGTTACGTACGCAAACTGGAGAGGAGGTGGTGAACTCAATCCGCAGGACGCTTGGCTACCTCTCACCGAGTCGAGGAAAGGCAATGTTTTCTCTGTTAGCTTTCATTTACTATGTTCGGGGATCGGAGTTCAAGCCCTTTTGCTTCCTGTTGCATTTGCCTCTCTTGGATGGCCATGGGGAACTGTATGCTTGTCACTGGCATTCACATGGCAGCTCTACACCATATGGCTTCTCGTACACCTGCACGAATCCGACTCCGGAACTCGTTACAGTAGATACCTCGACCTTGCAATAACAGTCTTCGGTCAAAAGCTAGGGAAAGTACTAGCACTGGTTCCGGTAATGTATCTTTCAGCTGGTACATGCGTACAACTAATCATCATCGGAGGTGGAACAATAAGGCTTTTCATCAATACTGTGTGTAGGGATGGAACAACTTGTGATCCCAAATCATTGACTGGTGCAGAGTGCTTCTTGGTGTTCATGTGCATGGCCATTGTTGTAGCTCAGTTTCCCAACTTGAACTCCCTGGCTTGGGTCTCTTTTATTGGCACCGCAGCTGCAGTTGTGTATTGTACTCTGGTTTGGGGTCTTTCAATTGGAAAGGGCAGGATCAATAACGTATCATACGACCCGCCAGTAATGGAGTCTGATATGGATAGGTTTGGTGGAATAATGAATGCCATAGGTATCATTTGTCTTGCATTCCGAGGTCACAATGTTATTCTTGAAATCCAGGGGACATTGCCAACAAATCCAAAGCTCCCAACATGTAAGACAATGTGGAGAGGAGTAACTACATCATATGCAATCATAGCTATCTGCTTGTTTCCTCTAGCCATAGCTGGATTTTGGACTTATGGAAACAAGGTACCCTCCTCCAATGGAGGACTATTGATCGCAATTTCGCAATTCCATGCACACGACATATCAAAAGTAGTGCTAGGACTAATTTGCATACTGGTAATCGTTCACTGCTTAAGCTCATTTCAAATCTATGGAATGGTAATTTTCGACAAGTTGGAGTTGAACTACACTAGCAGGAAGAACAAGCCATGCGCTAGGTGGCTTCGAACAGCTTTGCGTGTGTTCTTTGGAGGAGTGACATTTTTTGCAGCAGTGACATTTCCATTCTTGGGAAGTCTGGCACCTCTAATTGGAGGGGTGACGTTACCTTTGACGTATGCTTATCCATGCTTGATGTGGATTGCAATCAAGAAACCACAACCAAAAGGGGTAATGTGGTGTGTTAACATGGGACTTGGATTCTTAGGCTTGGTTTTAAGTCTTCTTTTAGTTATTGCAGCAGCATGGAATTTAGGCAACAAAGGCTTAGATGCCAACTTTTTCAAGCCTTAG

Protein Analysis

510

Amino Acids

55.42

Weight (kDa)

8.72

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 83 - 495 5e-54 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 420
Acc36I ACCTGC 1 cut(s) 420
Acc65I GGTACC 1 cut(s) 1042
AccB1I GGYRCC 3 cut(s) 722, 1042, 1318
AccIII TCCGGA 1 cut(s) 428
AciI CCGC 3 cut(s) 212, 726, 806
AclWI GGATC 3 cut(s) 299, 608, 791
AcoI YGGCCR 2 cut(s) 341, 663
AcsI RAATTY 1 cut(s) 1486
AfaI GTAC 7 cut(s) 179, 408, 495, 532, 540, 748, 1044
AfiI CCNNNNNNNGG 5 cut(s) 243, 705, 706, 1307, 1328
AflII CTTAAG 1 cut(s) 1150
AflIII ACRYGT 1 cut(s) 941
AgsI TTSAA 7 cut(s) 302, 694, 768, 902, 1163, 1201, 1522
AjnI CCWGG 2 cut(s) 699, 906
Alw26I GTCTC 1 cut(s) 715
AlwI GGATC 3 cut(s) 299, 608, 791
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 3 cut(s) 41, 341, 663
ApeKI GCWGC 6 cut(s) 382, 728, 731, 1286, 1475, 1478
ApoI RAATTY 1 cut(s) 1486
ArsI GACNNNNNNTTYG 2 cut(s) 1330, 1362
Asp718I GGTACC 1 cut(s) 1042
AspLEI GCGC 1 cut(s) 1232
AsuHPI GGTGA 3 cut(s) 212, 226, 1348
AsuII TTCGAA 1 cut(s) 1243
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BalI TGGCCA 2 cut(s) 343, 665
BanI GGYRCC 3 cut(s) 722, 1042, 1318
BbsI GAAGAC 2 cut(s) 463, 1451
BbvI GCAGC 6 cut(s) 394, 718, 740, 1298, 1487, 1490
BccI CCATC 3 cut(s) 4, 333, 593
BciT130I CCWGG 2 cut(s) 701, 908
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 715
BfaI CTAG 7 cut(s) 126, 485, 497, 1007, 1115, 1209, 1233
BfmI CTRYAG 1 cut(s) 732
BfrI CTTAAG 1 cut(s) 1150
BfuAI ACCTGC 1 cut(s) 420
BisI GCNGC 6 cut(s) 383, 729, 732, 1287, 1476, 1479
BlsI GCNGC 6 cut(s) 384, 730, 733, 1288, 1477, 1480
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 2 cut(s) 701, 908
BmiI GGNNCC 4 cut(s) 507, 724, 1044, 1320
BmrFI CCNGG 2 cut(s) 701, 908
BmsI GCATC 2 cut(s) 139, 1498
BpiI GAAGAC 2 cut(s) 463, 1451
BpmI CTGGAG 1 cut(s) 208
Bpu14I TTCGAA 1 cut(s) 1243
Bsa29I ATCGAT 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 1382
BsaI GGTCTC 1 cut(s) 715
BsaJI CCNNGG 4 cut(s) 344, 699, 880, 907
BsaWI WCCGGW 2 cut(s) 428, 508
BsaXI ACNNNNNCTCC 4 cut(s) 181, 211, 680, 710
Bsc4I CCNNNNNNNGG 5 cut(s) 243, 705, 706, 1307, 1328
Bse1I ACTGG 6 cut(s) 191, 372, 507, 634, 809, 1137
Bse3DI GCAATG 2 cut(s) 259, 914
Bse8I GATNNNNATC 1 cut(s) 1382
BseAI TCCGGA 1 cut(s) 428
BseBI CCWGG 2 cut(s) 701, 908
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 4 cut(s) 344, 699, 880, 907
BseGI GGATG 4 cut(s) 15, 154, 344, 604
BseJI GATNNNNATC 1 cut(s) 1382
BseLI CCNNNNNNNGG 5 cut(s) 243, 705, 706, 1307, 1328
BseMI GCAATG 2 cut(s) 259, 914
BseMII CTCAG 1 cut(s) 692
BseNI ACTGG 6 cut(s) 191, 372, 507, 634, 809, 1137
BseRI GAGGAG 4 cut(s) 207, 975, 1039, 1284
BseXI GCAGC 6 cut(s) 394, 718, 740, 1298, 1487, 1490
BsgI GTGCAG 3 cut(s) 78, 398, 654
BshFI GGCC 3 cut(s) 43, 343, 665
BshNI GGYRCC 3 cut(s) 722, 1042, 1318
BshVI ATCGAT 1 cut(s) 165
BsiSI CCGG 2 cut(s) 429, 509
BsiWI CGTACG 1 cut(s) 177
BslFI GGGAC 2 cut(s) 925, 1443
BslI CCNNNNNNNGG 5 cut(s) 243, 705, 706, 1307, 1328
BsmAI GTCTC 1 cut(s) 715
BsmFI GGGAC 2 cut(s) 925, 1443
BsmI GAATGC 3 cut(s) 371, 856, 875
BsnI GGCC 3 cut(s) 43, 343, 665
Bso31I GGTCTC 1 cut(s) 715
Bsp119I TTCGAA 1 cut(s) 1243
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 5 cut(s) 139, 291, 613, 783, 1068
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 3 cut(s) 212, 726, 806
BspANI GGCC 3 cut(s) 43, 343, 665
BspCNI CTCAG 1 cut(s) 691
BspDI ATCGAT 1 cut(s) 165
BspEI TCCGGA 1 cut(s) 428
BspLI GGNNCC 4 cut(s) 507, 724, 1044, 1320
BspMAI CTGCAG 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 3 cut(s) 299, 608, 791
BspT104I TTCGAA 1 cut(s) 1243
BspT107I GGYRCC 3 cut(s) 722, 1042, 1318
BspTI CTTAAG 1 cut(s) 1150
BspTNI GGTCTC 1 cut(s) 715
BsrDI GCAATG 2 cut(s) 259, 914
BsrI ACTGG 6 cut(s) 191, 372, 507, 634, 809, 1137
BssECI CCNNGG 4 cut(s) 344, 699, 880, 907
BssMI GATC 5 cut(s) 139, 291, 613, 783, 1068
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 2 cut(s) 701, 908
Bst4CI ACNGT 4 cut(s) 355, 443, 469, 589
BstAFI CTTAAG 1 cut(s) 1150
BstBAI YACGTR 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 1243
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 4 cut(s) 678, 1441, 1504, 1527
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 4 cut(s) 15, 154, 344, 604
BstHHI GCGC 1 cut(s) 1232
BstKTI GATC 5 cut(s) 142, 294, 616, 786, 1071
BstMAI GTCTC 1 cut(s) 715
BstMBI GATC 5 cut(s) 139, 291, 613, 783, 1068
BstMWI GCNNNNNNNGC 3 cut(s) 29, 986, 1500
BstNI CCWGG 2 cut(s) 701, 908
BstNSI RCATGY 2 cut(s) 537, 945
BstSCI CCNGG 2 cut(s) 699, 906
BstSFI CTRYAG 1 cut(s) 732
BstSNI TACGTA 1 cut(s) 177
BstV1I GCAGC 6 cut(s) 394, 718, 740, 1298, 1487, 1490
BstV2I GAAGAC 2 cut(s) 463, 1451
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 3 cut(s) 43, 343, 665
BsuTUI ATCGAT 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 4 cut(s) 15, 154, 344, 604
BtsI GCAGTG 2 cut(s) 1144, 1296
BtsIMutI CAGTG 4 cut(s) 365, 500, 1144, 1296
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 1232
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 227
Csp6I GTAC 7 cut(s) 178, 407, 494, 531, 539, 747, 1043
CviQI GTAC 7 cut(s) 178, 407, 494, 531, 539, 747, 1043
DdeI CTNAG 4 cut(s) 678, 1441, 1504, 1527
DpnI GATC 5 cut(s) 141, 293, 615, 785, 1070
DpnII GATC 5 cut(s) 139, 291, 613, 783, 1068
EaeI YGGCCR 2 cut(s) 341, 663
Eco105I TACGTA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 715
EcoRII CCWGG 2 cut(s) 699, 906
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaqI GGGAC 2 cut(s) 925, 1443
FauI CCCGC 1 cut(s) 813
FauNDI CATATG 2 cut(s) 395, 976
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 6 cut(s) 383, 729, 732, 1287, 1476, 1479
FokI GGATG 4 cut(s) 22, 161, 351, 611
Fsp4HI GCNGC 6 cut(s) 383, 729, 732, 1287, 1476, 1479
FspBI CTAG 7 cut(s) 126, 485, 497, 1007, 1115, 1209, 1233
GlaI GCGC 1 cut(s) 1231
GluI GCNGC 6 cut(s) 383, 729, 732, 1287, 1476, 1479
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 3 cut(s) 43, 343, 665
HapII CCGG 2 cut(s) 429, 509
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 1232
Hin6I GCGC 1 cut(s) 1230
HinP1I GCGC 1 cut(s) 1230
HincII GTYRAC 1 cut(s) 1423
HindII GTYRAC 1 cut(s) 1423
HinfI GANTC 6 cut(s) 89, 239, 419, 425, 818, 1437
HpaI GTTAAC 1 cut(s) 1423
HpaII CCGG 2 cut(s) 429, 509
HphI GGTGA 3 cut(s) 212, 226, 1348
Hpy166II GTNNAC 4 cut(s) 203, 409, 1144, 1423
Hpy188I TCNGA 7 cut(s) 39, 88, 296, 424, 557, 823, 881
Hpy188III TCNNGA 3 cut(s) 429, 899, 1387
Hpy8I GTNNAC 4 cut(s) 203, 409, 1144, 1423
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 4 cut(s) 355, 443, 469, 589
HpyCH4IV ACGT 4 cut(s) 176, 792, 1340, 1352
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 986, 1500
HpyF3I CTNAG 4 cut(s) 678, 1441, 1504, 1527
HpySE526I ACGT 4 cut(s) 176, 792, 1340, 1352
HspAI GCGC 1 cut(s) 1230
Kpn2I TCCGGA 1 cut(s) 428
KpnI GGTACC 1 cut(s) 1046
Ksp22I TGATCA 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 1423
Kzo9I GATC 5 cut(s) 139, 291, 613, 783, 1068
LmnI GCTCC 1 cut(s) 939
Lsp1109I GCAGC 6 cut(s) 394, 718, 740, 1298, 1487, 1490
LweI GCATC 2 cut(s) 139, 1498
MaeI CTAG 7 cut(s) 126, 485, 497, 1007, 1115, 1209, 1233
MaeII ACGT 4 cut(s) 176, 792, 1340, 1352
MaeIII GTNAC 9 cut(s) 172, 363, 437, 884, 964, 1273, 1291, 1336, 1341
MalI GATC 5 cut(s) 141, 293, 615, 785, 1070
MboI GATC 5 cut(s) 139, 291, 613, 783, 1068
MboII GAAGA 4 cut(s) 26, 463, 1228, 1451
MfeI CAATTG 1 cut(s) 768
MlsI TGGCCA 2 cut(s) 343, 665
MluCI AATT 8 cut(s) 154, 768, 1074, 1082, 1122, 1179, 1326, 1486
MluNI TGGCCA 2 cut(s) 343, 665
MlyI GAGTC 3 cut(s) 248, 419, 827
MmeI TCCRAC 2 cut(s) 447, 1173
Mox20I TGGCCA 2 cut(s) 343, 665
MroI TCCGGA 1 cut(s) 428
MscI TGGCCA 2 cut(s) 343, 665
MseI TTAA 4 cut(s) 66, 1151, 1422, 1454
MslI CAYNNNNRTG 3 cut(s) 147, 376, 659
Msp20I TGGCCA 2 cut(s) 343, 665
MspA1I CMGCKG 2 cut(s) 527, 731
MspCI CTTAAG 1 cut(s) 1150
MspI CCGG 2 cut(s) 429, 509
MspR9I CCNGG 2 cut(s) 701, 908
MunI CAATTG 1 cut(s) 768
Mva1269I GAATGC 3 cut(s) 371, 856, 875
MvaI CCWGG 2 cut(s) 701, 908
MwoI GCNNNNNNNGC 3 cut(s) 29, 986, 1500
NcoI CCATGG 1 cut(s) 344
NdeI CATATG 2 cut(s) 395, 976
NdeII GATC 5 cut(s) 139, 291, 613, 783, 1068
NlaIV GGNNCC 4 cut(s) 507, 724, 1044, 1320
NmuCI GTSAC 5 cut(s) 363, 884, 1273, 1291, 1336
NspI RCATGY 2 cut(s) 537, 945
NspV TTCGAA 1 cut(s) 1243
PaqCI CACCTGC 1 cut(s) 420
PciI ACATGT 1 cut(s) 941
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PctI GAATGC 3 cut(s) 371, 856, 875
PfeI GAWTC 3 cut(s) 89, 419, 1437
Pfl23II CGTACG 1 cut(s) 177
PkrI GCNGC 6 cut(s) 384, 730, 733, 1288, 1477, 1480
PleI GAGTC 3 cut(s) 247, 419, 826
PpsI GAGTC 3 cut(s) 247, 419, 826
Ppu21I YACGTR 1 cut(s) 177
PscI ACATGT 1 cut(s) 941
Psp6I CCWGG 2 cut(s) 699, 906
PspGI CCWGG 2 cut(s) 699, 906
PspLI CGTACG 1 cut(s) 177
PspN4I GGNNCC 4 cut(s) 507, 724, 1044, 1320
PstI CTGCAG 1 cut(s) 736
PvuII CAGCTG 2 cut(s) 527, 731
RsaI GTAC 7 cut(s) 179, 408, 495, 532, 540, 748, 1044
RsaNI GTAC 7 cut(s) 178, 407, 494, 531, 539, 747, 1043
RseI CAYNNNNRTG 3 cut(s) 147, 376, 659
SaqAI TTAA 4 cut(s) 66, 1151, 1422, 1454
SatI GCNGC 6 cut(s) 383, 729, 732, 1287, 1476, 1479
Sau3AI GATC 5 cut(s) 139, 291, 613, 783, 1068
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 3 cut(s) 248, 419, 827
ScrFI CCNGG 2 cut(s) 701, 908
SfaNI GCATC 2 cut(s) 139, 1498
SfcI CTRYAG 1 cut(s) 732
SfuI TTCGAA 1 cut(s) 1243
SmiMI CAYNNNNRTG 3 cut(s) 147, 376, 659
SmlI CTYRAG 1 cut(s) 1150
SmoI CTYRAG 1 cut(s) 1150
SnaBI TACGTA 1 cut(s) 177
Sse9I AATT 8 cut(s) 154, 768, 1074, 1082, 1122, 1179, 1326, 1486
SsiI CCGC 3 cut(s) 212, 726, 806
SspMI CTAG 7 cut(s) 126, 485, 497, 1007, 1115, 1209, 1233
StyD4I CCNGG 2 cut(s) 699, 906
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 4 cut(s) 355, 443, 469, 589
TaiI ACGT 4 cut(s) 179, 795, 1343, 1355
TaqI TCGA 5 cut(s) 165, 242, 453, 1185, 1243
TaqII GACCGA 1 cut(s) 464
TasI AATT 8 cut(s) 154, 768, 1074, 1082, 1122, 1179, 1326, 1486
TatI WGTACW 2 cut(s) 493, 746
TfiI GAWTC 3 cut(s) 89, 419, 1437
Tru1I TTAA 4 cut(s) 66, 1151, 1422, 1454
Tru9I TTAA 4 cut(s) 66, 1151, 1422, 1454
TscAI CASTG 4 cut(s) 372, 507, 1151, 1296
TseFI GTSAC 5 cut(s) 363, 884, 1273, 1291, 1336
TseI GCWGC 6 cut(s) 382, 728, 731, 1286, 1475, 1478
Tsp45I GTSAC 5 cut(s) 363, 884, 1273, 1291, 1336
TspDTI ATGAA 6 cut(s) 42, 47, 263, 568, 643, 863
TspRI CASTG 4 cut(s) 372, 507, 1151, 1296
Vha464I CTTAAG 1 cut(s) 1150
XapI RAATTY 1 cut(s) 1486
XceI RCATGY 2 cut(s) 537, 945
XcmI CCANNNNNNNNNTGG 2 cut(s) 1233, 1371
XspI CTAG 7 cut(s) 126, 485, 497, 1007, 1115, 1209, 1233
ZrmI AGTACT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.