RchiOBHm_Chr6g0279681

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
42771984 .. 42774978
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25081

Sequence Viewer

Length: 1560 bp
ATGTGTAAGCTAGCTCCCTATAAATGTGGCTTTTCTTGTTTCTCAGCATTTAAGGTTTTTAAGGAGACTGCAGATATGGAAGAGGTGGTGGTTATGGAAACAGATTGCAGGGCAGAGTTAACAAGGGGACATTCCTTTCACAGTTTCAGTATCAGAAGCTCATCAGAGTCTGCTCAAGTCAATCCCATCACAACCAGTCCTCCTTGTGGAGGAGAAGAAGATGGTACAAACTGGAGAGGCCCAGGTGGTGGTGGTGAGCTCAATCCACTAGATGCTTGGCTACCCATCACAGAGTCCAGGAATGGGAATACCTTTTCTGTTACCTTCCATTTACTGTGTTCTGGAATTGGATTCCAAGCCCTTTTACTTCCATTTGCATTTGTCACTCTTGGATGGGCATGGGGAATCATATGCTTGTCACTAGCATTTACATGGCAACTCTACACTATATGGCTCCTCGTTCAGCTACACGAATCTGAATCTGGAATTCGTTACAGCAGATATATCCACCTCGCTGTAACAGCCTTTGGTCCAAAGTTAGGGAAGTTGCTAGGCATGTTCCCAGTGATGTATCTATCTGGGGGTACATGTGTGCAATTGATTATCATAGGAGGTTCCACCATAAAGCTTTTCTTCAATACTGTTTGTGACGCCAAGTCAGTGACTGCTACAGAGTGCTTCTTAATGTTCACATGCTTAGCCATGGCTGGGGCTCAGTTTCGCAATCTGAACTCCATGGCTAGAGTCTCTTTCATTGGCACCATCACGGCAATTGTCTACTGTACTCTGATTTGGGCTCTTTCAATTGCCAAGGGAAGGCATGATGATATATCATATGATCCACCACTGCTGGAGTCCAACGTGGATAGATTTGGTGGTATACTGAATGCACTTGGCATTATTTTTCTTGCATTCAGAGGTCATAATGTAATTCTTGAAATACAGGGGACATTGCCATCAAAACATCCAACTCGCAAGCCCATGTGGAGAGGAGTGATTATATCATATGCAGTTATAGCTATGTGTTTGCTTCCTCTTGCCGTATGCGGATTTTGGGCTTATGGAAACAAGGTACCATCGTCAATTGGAGAAATATTGATAGCAGCTGCACAATTTGGCGGACATAAAACCTCGAAATTTGTATTGGGACTAATTTGCATACTAGTAGTGGTTAGCTGCTTAAGTGCGTTTCAAATCTATGGCATGGTAGTGTTTGACAATTTGGAGTTGAGGTACTCAAGCAAGAAGACGAAGCCTTGTGCAAGGTGGCTACGCGTAGCTTTTCGGATTTTTTTTGGTGTATTTGTATTCTTCATAGCAATGGCTTTCCCGTTCTTGATAAGCTTGGCGGTTCTAATTGGAGGCTTGGCATTTCCTTTAACATATGCTCATCCATGTTTGATGTGGATTGCAATCAAGAAACCAAAGCGAAAAGGTGTCATATGGTGTATTAACATGGGACTTGGATGCTTAGGCCTGTCTTTGAGTGTTCTTTTAGTTGTTGCTGCATCATGGAATATAGCTCACAACGGCCTAAATGCCAACTTCTTCAGGCCTTAA

Protein Analysis

519

Amino Acids

56.93

Weight (kDa)

9.0

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 101 - 501 1.6e-52 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1072
AccB1I GGYRCC 2 cut(s) 758, 1072
AccB7I CCANNNNNTGG 1 cut(s) 248
AccI GTMKAC 2 cut(s) 777, 880
AccII CGCG 1 cut(s) 1275
AciI CCGC 3 cut(s) 1047, 1119, 1349
AclWI GGATC 1 cut(s) 833
AcsI RAATTY 2 cut(s) 486, 1136
AcuI CTGAAG 1 cut(s) 1534
AcyI GRCGYC 1 cut(s) 651
AfaI GTAC 5 cut(s) 226, 586, 784, 1074, 1235
AfiI CCNNNNNNNGG 7 cut(s) 206, 209, 248, 303, 539, 708, 816
AflII CTTAAG 1 cut(s) 1180
AflIII ACRYGT 2 cut(s) 587, 1273
AgsI TTSAA 4 cut(s) 637, 804, 938, 1193
AhdI GACNNNNNGTC 1 cut(s) 655
AhlI ACTAGT 1 cut(s) 1162
AjnI CCWGG 2 cut(s) 241, 296
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 2 cut(s) 59, 751
AlwI GGATC 1 cut(s) 833
AlwNI CAGNNNCTG 2 cut(s) 170, 665
AoxI GGCC 4 cut(s) 238, 1474, 1531, 1553
ApeKI GCWGC 4 cut(s) 1103, 1106, 1176, 1505
ApoI RAATTY 2 cut(s) 486, 1136
Asp718I GGTACC 1 cut(s) 1072
AspS9I GGNCC 2 cut(s) 239, 530
AsuHPI GGTGA 1 cut(s) 266
AsuNHI GCTAGC 1 cut(s) 10
AvaII GGWCC 1 cut(s) 530
BaeI ACNNNNGTAYC 4 cut(s) 576, 609, 1064, 1097
BanI GGYRCC 2 cut(s) 758, 1072
BanII GRGCYC 3 cut(s) 261, 715, 799
BbsI GAAGAC 1 cut(s) 1253
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 4 cut(s) 1093, 1115, 1163, 1492
BccI CCATC 7 cut(s) 194, 215, 293, 387, 770, 964, 1084
BceAI ACGGC 3 cut(s) 783, 1025, 1546
BciT130I CCWGG 2 cut(s) 243, 298
BcoDI GTCTC 2 cut(s) 59, 751
BcuI ACTAGT 1 cut(s) 1162
BfaI CTAG 6 cut(s) 11, 269, 422, 551, 741, 1163
BfmI CTRYAG 2 cut(s) 69, 669
BfrI CTTAAG 1 cut(s) 1180
BisI GCNGC 4 cut(s) 1104, 1107, 1177, 1506
BlpI GCTNAGC 1 cut(s) 697
BlsI GCNGC 4 cut(s) 1105, 1108, 1178, 1507
Bme1390I CCNGG 2 cut(s) 243, 298
Bme18I GGWCC 1 cut(s) 530
BmeRI GACNNNNNGTC 1 cut(s) 655
BmgT120I GGNCC 2 cut(s) 239, 530
BmiI GGNNCC 4 cut(s) 455, 616, 760, 1074
BmrFI CCNGG 2 cut(s) 243, 298
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 3 cut(s) 262, 1457, 1517
BmtI GCTAGC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 1253
BpmI CTGGAG 2 cut(s) 253, 872
Bpu10I CCTNAGC 1 cut(s) 1471
Bpu1102I GCTNAGC 1 cut(s) 697
BpuEI CTTGAG 2 cut(s) 159, 1222
BsaBI GATNNNNATC 1 cut(s) 1412
BsaHI GRCGYC 1 cut(s) 651
BsaJI CCNNGG 4 cut(s) 241, 702, 735, 810
BsaXI ACNNNNNCTCC 4 cut(s) 184, 214, 1217, 1247
Bsc4I CCNNNNNNNGG 7 cut(s) 206, 209, 248, 303, 539, 708, 816
Bse1I ACTGG 3 cut(s) 195, 236, 563
Bse3DI GCAATG 2 cut(s) 950, 1326
Bse8I GATNNNNATC 1 cut(s) 1412
BseBI CCWGG 2 cut(s) 243, 298
BseDI CCNNGG 4 cut(s) 241, 702, 735, 810
BseGI GGATG 4 cut(s) 398, 964, 1390, 1472
BseJI GATNNNNATC 1 cut(s) 1412
BseLI CCNNNNNNNGG 7 cut(s) 206, 209, 248, 303, 539, 708, 816
BseMI GCAATG 2 cut(s) 950, 1326
BseMII CTCAG 2 cut(s) 57, 728
BseNI ACTGG 3 cut(s) 195, 236, 563
BseRI GAGGAG 3 cut(s) 225, 446, 1005
BseXI GCAGC 4 cut(s) 1093, 1115, 1163, 1492
BseYI CCCAGC 1 cut(s) 707
BsgI GTGCAG 1 cut(s) 1092
Bsh1236I CGCG 1 cut(s) 1275
BshFI GGCC 4 cut(s) 240, 1476, 1533, 1555
BshNI GGYRCC 2 cut(s) 758, 1072
BsiHKAI GWGCWC 1 cut(s) 261
BslFI GGGAC 4 cut(s) 141, 961, 1161, 1473
BslI CCNNNNNNNGG 7 cut(s) 206, 209, 248, 303, 539, 708, 816
BsmAI GTCTC 2 cut(s) 59, 751
BsmFI GGGAC 4 cut(s) 141, 961, 1161, 1473
BsmI GAATGC 2 cut(s) 892, 911
BsnI GGCC 4 cut(s) 240, 1476, 1533, 1555
Bsp1286I GDGCHC 3 cut(s) 261, 715, 799
Bsp143I GATC 1 cut(s) 838
Bsp1720I GCTNAGC 1 cut(s) 697
Bsp19I CCATGG 2 cut(s) 702, 735
BspACI CCGC 3 cut(s) 1047, 1119, 1349
BspANI GGCC 4 cut(s) 240, 1476, 1533, 1555
BspCNI CTCAG 2 cut(s) 56, 727
BspFNI CGCG 1 cut(s) 1275
BspLI GGNNCC 4 cut(s) 455, 616, 760, 1074
BspMAI CTGCAG 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 833
BspT107I GGYRCC 2 cut(s) 758, 1072
BspTI CTTAAG 1 cut(s) 1180
BsrDI GCAATG 2 cut(s) 950, 1326
BsrI ACTGG 3 cut(s) 195, 236, 563
BssECI CCNNGG 4 cut(s) 241, 702, 735, 810
BssMI GATC 1 cut(s) 838
BssNAI GTATAC 1 cut(s) 881
BssNI GRCGYC 1 cut(s) 651
BssT1I CCWWGG 3 cut(s) 702, 735, 810
Bst1107I GTATAC 1 cut(s) 881
Bst2UI CCWGG 2 cut(s) 243, 298
Bst4CI ACNGT 4 cut(s) 143, 336, 643, 782
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 651
BstAFI CTTAAG 1 cut(s) 1180
BstC8I GCNNGC 2 cut(s) 12, 977
BstDEI CTNAG 4 cut(s) 43, 697, 714, 1471
BstDSI CCRYGG 2 cut(s) 702, 735
BstENI CCTNNNNNAGG 1 cut(s) 207
BstF5I GGATG 4 cut(s) 398, 964, 1390, 1472
BstFNI CGCG 1 cut(s) 1275
BstKTI GATC 1 cut(s) 841
BstMAI GTCTC 2 cut(s) 59, 751
BstMBI GATC 1 cut(s) 838
BstMWI GCNNNNNNNGC 2 cut(s) 521, 1016
BstNI CCWGG 2 cut(s) 243, 298
BstNSI RCATGY 3 cut(s) 559, 591, 696
BstSCI CCNGG 2 cut(s) 241, 296
BstSFI CTRYAG 2 cut(s) 69, 669
BstUI CGCG 1 cut(s) 1275
BstV1I GCAGC 4 cut(s) 1093, 1115, 1163, 1492
BstV2I GAAGAC 1 cut(s) 1253
BstZ17I GTATAC 1 cut(s) 881
BsuRI GGCC 4 cut(s) 240, 1476, 1533, 1555
BtgI CCRYGG 2 cut(s) 702, 735
BtsCI GGATG 4 cut(s) 398, 964, 1390, 1472
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 3 cut(s) 570, 666, 845
Cac8I GCNNGC 2 cut(s) 12, 977
CaiI CAGNNNCTG 2 cut(s) 170, 665
Cfr13I GGNCC 2 cut(s) 239, 530
CseI GACGC 1 cut(s) 659
Csp6I GTAC 5 cut(s) 225, 585, 783, 1073, 1234
CviQI GTAC 5 cut(s) 225, 585, 783, 1073, 1234
DdeI CTNAG 4 cut(s) 43, 697, 714, 1471
DpnI GATC 1 cut(s) 840
DpnII GATC 1 cut(s) 838
DriI GACNNNNNGTC 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 75
Eam1105I GACNNNNNGTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 1134
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 702, 735, 810
Eco147I AGGCCT 2 cut(s) 1476, 1555
Eco24I GRGCYC 3 cut(s) 261, 715, 799
Eco47I GGWCC 1 cut(s) 530
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 1534
EcoICRI GAGCTC 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 2 cut(s) 241, 296
EcoT14I CCWWGG 3 cut(s) 702, 735, 810
EcoT38I GRGCYC 3 cut(s) 261, 715, 799
ErhI CCWWGG 3 cut(s) 702, 735, 810
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 4 cut(s) 141, 961, 1161, 1473
FauNDI CATATG 5 cut(s) 410, 835, 1006, 1384, 1442
FblI GTMKAC 2 cut(s) 777, 880
Fnu4HI GCNGC 4 cut(s) 1104, 1107, 1177, 1506
FokI GGATG 4 cut(s) 405, 951, 1377, 1479
FriOI GRGCYC 3 cut(s) 261, 715, 799
Fsp4HI GCNGC 4 cut(s) 1104, 1107, 1177, 1506
FspBI CTAG 6 cut(s) 11, 269, 422, 551, 741, 1163
GluI GCNGC 4 cut(s) 1104, 1107, 1177, 1506
GsaI CCCAGC 1 cut(s) 711
GsuI CTGGAG 2 cut(s) 253, 872
HaeIII GGCC 4 cut(s) 240, 1476, 1533, 1555
HgaI GACGC 1 cut(s) 659
Hin1I GRCGYC 1 cut(s) 651
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 2 cut(s) 626, 1342
HinfI GANTC 8 cut(s) 167, 293, 351, 405, 473, 479, 744, 854
HpaI GTTAAC 1 cut(s) 120
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 4 cut(s) 120, 690, 778, 881
Hpy188I TCNGA 7 cut(s) 155, 166, 478, 729, 789, 917, 1287
Hpy188III TCNNGA 5 cut(s) 342, 483, 935, 1336, 1417
Hpy8I GTNNAC 4 cut(s) 120, 690, 778, 881
HpyAV CCTTC 2 cut(s) 334, 810
HpyCH4III ACNGT 4 cut(s) 143, 336, 643, 782
HpyCH4IV ACGT 1 cut(s) 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 1016
HpyF3I CTNAG 4 cut(s) 43, 697, 714, 1471
HpySE526I ACGT 1 cut(s) 861
Hsp92I GRCGYC 1 cut(s) 651
KpnI GGTACC 1 cut(s) 1076
KspAI GTTAAC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 838
LmnI GCTCC 2 cut(s) 19, 459
Lsp1109I GCAGC 4 cut(s) 1093, 1115, 1163, 1492
LweI GCATC 3 cut(s) 262, 1457, 1517
MaeI CTAG 6 cut(s) 11, 269, 422, 551, 741, 1163
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 7 cut(s) 319, 382, 417, 491, 517, 647, 661
MalI GATC 1 cut(s) 840
MboI GATC 1 cut(s) 838
MboII GAAGA 7 cut(s) 92, 227, 230, 625, 1258, 1303, 1540
MfeI CAATTG 4 cut(s) 596, 771, 804, 1083
MhlI GDGCHC 3 cut(s) 261, 715, 799
MluI ACGCGT 1 cut(s) 1273
MlyI GAGTC 4 cut(s) 176, 302, 753, 863
MmeI TCCRAC 2 cut(s) 882, 992
MseI TTAA 8 cut(s) 51, 60, 119, 683, 1181, 1379, 1452, 1558
MslI CAYNNNNRTG 3 cut(s) 430, 1208, 1319
MspA1I CMGCKG 1 cut(s) 1106
MspCI CTTAAG 1 cut(s) 1180
MspR9I CCNGG 2 cut(s) 243, 298
MunI CAATTG 4 cut(s) 596, 771, 804, 1083
Mva1269I GAATGC 2 cut(s) 892, 911
MvaI CCWGG 2 cut(s) 243, 298
MvnI CGCG 1 cut(s) 1275
MwoI GCNNNNNNNGC 2 cut(s) 521, 1016
NcoI CCATGG 2 cut(s) 702, 735
NdeI CATATG 5 cut(s) 410, 835, 1006, 1384, 1442
NdeII GATC 1 cut(s) 838
NheI GCTAGC 1 cut(s) 10
NlaIV GGNNCC 4 cut(s) 455, 616, 760, 1074
NmuCI GTSAC 4 cut(s) 382, 417, 647, 661
NspI RCATGY 3 cut(s) 559, 591, 696
PceI AGGCCT 2 cut(s) 1476, 1555
PciI ACATGT 1 cut(s) 587
PctI GAATGC 2 cut(s) 892, 911
PfeI GAWTC 4 cut(s) 351, 405, 473, 479
PflMI CCANNNNNTGG 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 296
PkrI GCNGC 4 cut(s) 1105, 1108, 1178, 1507
PleI GAGTC 4 cut(s) 175, 301, 752, 862
PpsI GAGTC 4 cut(s) 175, 301, 752, 862
PscI ACATGT 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 241, 296
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 2 cut(s) 241, 296
PspN4I GGNNCC 4 cut(s) 455, 616, 760, 1074
PspPI GGNCC 2 cut(s) 239, 530
PstI CTGCAG 1 cut(s) 73
PstNI CAGNNNCTG 2 cut(s) 170, 665
PvuII CAGCTG 1 cut(s) 1106
RsaI GTAC 5 cut(s) 226, 586, 784, 1074, 1235
RsaNI GTAC 5 cut(s) 225, 585, 783, 1073, 1234
RseI CAYNNNNRTG 3 cut(s) 430, 1208, 1319
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 8 cut(s) 51, 60, 119, 683, 1181, 1379, 1452, 1558
SatI GCNGC 4 cut(s) 1104, 1107, 1177, 1506
Sau3AI GATC 1 cut(s) 838
Sau96I GGNCC 2 cut(s) 239, 530
SchI GAGTC 4 cut(s) 176, 302, 753, 863
ScrFI CCNGG 2 cut(s) 243, 298
SduI GDGCHC 3 cut(s) 261, 715, 799
SfaNI GCATC 3 cut(s) 262, 1457, 1517
SfcI CTRYAG 2 cut(s) 69, 669
SinI GGWCC 1 cut(s) 530
SmiMI CAYNNNNRTG 3 cut(s) 430, 1208, 1319
SmlI CTYRAG 3 cut(s) 174, 1180, 1237
SmoI CTYRAG 3 cut(s) 174, 1180, 1237
SpeI ACTAGT 1 cut(s) 1162
SseBI AGGCCT 2 cut(s) 1476, 1555
SsiI CCGC 3 cut(s) 1047, 1119, 1349
SspI AATATT 1 cut(s) 1095
SspMI CTAG 6 cut(s) 11, 269, 422, 551, 741, 1163
SstI GAGCTC 1 cut(s) 261
StuI AGGCCT 2 cut(s) 1476, 1555
StyD4I CCNGG 2 cut(s) 241, 296
StyI CCWWGG 3 cut(s) 702, 735, 810
TaaI ACNGT 4 cut(s) 143, 336, 643, 782
TaiI ACGT 1 cut(s) 864
TaqI TCGA 1 cut(s) 1133
TatI WGTACW 1 cut(s) 782
TfiI GAWTC 4 cut(s) 351, 405, 473, 479
Tru1I TTAA 8 cut(s) 51, 60, 119, 683, 1181, 1379, 1452, 1558
Tru9I TTAA 8 cut(s) 51, 60, 119, 683, 1181, 1379, 1452, 1558
TscAI CASTG 3 cut(s) 570, 666, 852
TseFI GTSAC 4 cut(s) 382, 417, 647, 661
TseI GCWGC 4 cut(s) 1103, 1106, 1176, 1505
Tsp45I GTSAC 4 cut(s) 382, 417, 647, 661
TspDTI ATGAA 2 cut(s) 742, 1303
TspRI CASTG 3 cut(s) 570, 666, 852
Van91I CCANNNNNTGG 1 cut(s) 248
Vha464I CTTAAG 1 cut(s) 1180
VpaK11BI GGWCC 1 cut(s) 530
XagI CCTNNNNNAGG 1 cut(s) 207
XapI RAATTY 2 cut(s) 486, 1136
XceI RCATGY 3 cut(s) 559, 591, 696
XcmI CCANNNNNNNNNTGG 2 cut(s) 273, 1401
XmiI GTMKAC 2 cut(s) 777, 880
XspI CTAG 6 cut(s) 11, 269, 422, 551, 741, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.