Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

40742097 .. 40755355

Gene Structure 13259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCCATCATATGTGTTTGCAGGGCATGGGGATGTATATGCTTGTTACTAGCGTTTGCATGGCAGCTCTACACTATACGGCTCCTTGTACTATCCCACGAATCTGATACCGGAACTCGTTATAGTAGATACCTCCAACTTGCTATTAGAGCCTTCGGTCAAAAGCTAGGGAAGTTGCTAGTAATGTTCCCGATGATCTATCTATCAAATGGTGCTTGTGTCCAACTTATTATCGCAGGAGGTCTAACAATGGAGCTTTTCTTCAAAACCGTGTGTAACGATGGGGCTACTACTTATTGTCATCCAATGACTGGTACAGAGTGCTTCTTGGTGTTCATGATCATGGCTATCATTGTGGCTCAGTTTCCCAACTTGAACTCCATAGCTTGGGTCTCTTTGATTGGTTCTATCACAGCAATTGTATATTGCACCATCATCTGGTCTATTTCAGTTGGCAAGGGCAGACCTAATGGTATATCATACAATCCACCAGAAATGGAGTCTAATATGGATAGATTTGGTCGGATACTGAATGCGATTGGCATTGTGTTTTTGGCATTCAGAGGTCACAACGTCATTCTTGAAATACAGGGAACATTGCCATCTGAGCCAAAACACCCAATTCATAAGCGAATGTGGAGAGGGGTGATTATATCGTATGCTATCATTGCCATATGCTTGCTTCCTCTAGCCATAGCTGGATTTTGGGCACATGGAAACAAGGTGCCTTCCTCATCAGTTTTATCAATATCTGCAATACTAGGCTCAGCTGCACAACTACCTGGACACAATAACAACTCAAGGTATGTTCTGGGAGTAATCTGCATTCTTGTAATAATACACTGCTTAAGCACATTTCAAATCTATGGCATGGTAGCCTTTGACAACTTGGAGATGAAGTACACTATGAGGAAGAACAAGCCGTGTCCAAGATGGCTTCGAGTAGCTTTCCGTTTTTTGTTTGGAGGATTGGCATTCTTTATAGCGGTGACCTTTCCGTTCTTCGTAAGCCTGGCACCTCTAATTGGAGGTTTGACATTGCCTATGGCTTATGCTTATCCGTGTTTCATGTGGATCACACTCAAGAAACCGAAGCCGAAAGGTTTAATGTGGTATATTAACGTGGGACTTGGATGCTTGGGACTGGTTTTGAGTGTTGTTTTAGTGGTTGCAGCAGCATGGAATTTAGCTCAGAAAGGTATAAATGCCAATTTCTTCAAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

408

Amino Acids

45.17

Weight (kDa)

9.52

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	11 - 391	6.8e-45	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	724, 1015
AccB7I	CCANNNNNTGG	3 cut(s)	311, 387, 438
AciI	CCGC	1 cut(s)	986
AclWI	GGATC	1 cut(s)	1082
AcsI	RAATTY	1 cut(s)	1183
AfaI	GTAC	3 cut(s)	90, 316, 902
AfiI	CCNNNNNNNGG	4 cut(s)	311, 387, 438, 1025
AflII	CTTAAG	1 cut(s)	847
AgsI	TTSAA	5 cut(s)	265, 376, 584, 860, 1219
AjnI	CCWGG	2 cut(s)	781, 1011
AluBI	AGCT	8 cut(s)	67, 166, 256, 386, 698, 770, 947, 1190
AluI	AGCT	8 cut(s)	67, 166, 256, 386, 698, 770, 947, 1190
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	1082
ApeKI	GCWGC	4 cut(s)	64, 770, 1172, 1175
ApoI	RAATTY	1 cut(s)	1183
AsuHPI	GGTGA	2 cut(s)	658, 1000
BaeGI	GKGCMC	1 cut(s)	712
BanI	GGYRCC	2 cut(s)	724, 1015
BbvI	GCAGC	4 cut(s)	76, 757, 1184, 1187
BccI	CCATC	5 cut(s)	14, 275, 440, 610, 927
BceAI	ACGGC	2 cut(s)	95, 907
BciT130I	CCWGG	2 cut(s)	783, 1013
BciVI	GTATCC	1 cut(s)	519
BclI	TGATCA	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	6 cut(s)	50, 167, 179, 689, 761, 1225
BfrI	CTTAAG	1 cut(s)	847
BfuI	GTATCC	1 cut(s)	519
BisI	GCNGC	4 cut(s)	65, 771, 1173, 1176
BlpI	GCTNAGC	1 cut(s)	766
BlsI	GCNGC	4 cut(s)	66, 772, 1174, 1177
Bme1390I	CCNGG	2 cut(s)	783, 1013
BmiI	GGNNCC	3 cut(s)	83, 726, 1017
BmrFI	CCNGG	2 cut(s)	783, 1013
BmsI	GCATC	1 cut(s)	1124
Bpu1102I	GCTNAGC	1 cut(s)	766
BpuEI	CTTGAG	2 cut(s)	784, 1067
BsaI	GGTCTC	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 392, 884, 914
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 387, 438, 1025
Bse1I	ACTGG	2 cut(s)	316, 1149
Bse3DI	GCAATG	3 cut(s)	596, 666, 1037
BseBI	CCWGG	2 cut(s)	783, 1013
BseGI	GGATG	3 cut(s)	38, 301, 1139
BseLI	CCNNNNNNNGG	4 cut(s)	311, 387, 438, 1025
BseMI	GCAATG	3 cut(s)	596, 666, 1037
BseMII	CTCAG	4 cut(s)	374, 597, 780, 1205
BseNI	ACTGG	2 cut(s)	316, 1149
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	4 cut(s)	76, 757, 1184, 1187
BsgI	GTGCAG	1 cut(s)	756
BshNI	GGYRCC	2 cut(s)	724, 1015
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	1140, 1155
BslI	CCNNNNNNNGG	4 cut(s)	311, 387, 438, 1025
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	1140, 1155
BsmI	GAATGC	4 cut(s)	538, 557, 825, 974
Bso31I	GGTCTC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp143I	GATC	3 cut(s)	195, 339, 1074
Bsp1720I	GCTNAGC	1 cut(s)	766
BspACI	CCGC	1 cut(s)	986
BspCNI	CTCAG	4 cut(s)	373, 598, 779, 1204
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	83, 726, 1017
BspPI	GGATC	1 cut(s)	1082
BspT107I	GGYRCC	2 cut(s)	724, 1015
BspTI	CTTAAG	1 cut(s)	847
BspTNI	GGTCTC	1 cut(s)	397
BsrDI	GCAATG	3 cut(s)	596, 666, 1037
BsrI	ACTGG	2 cut(s)	316, 1149
BssMI	GATC	3 cut(s)	195, 339, 1074
Bst2UI	CCWGG	2 cut(s)	783, 1013
Bst4CI	ACNGT	1 cut(s)	271
BstAFI	CTTAAG	1 cut(s)	847
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	4 cut(s)	360, 606, 766, 1191
BstEII	GGTNACC	1 cut(s)	988
BstF5I	GGATG	3 cut(s)	38, 301, 1139
BstKTI	GATC	3 cut(s)	198, 342, 1077
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	195, 339, 1074
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 607, 668
BstNI	CCWGG	2 cut(s)	783, 1013
BstPI	GGTNACC	1 cut(s)	988
BstSCI	CCNGG	2 cut(s)	781, 1011
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	4 cut(s)	76, 757, 1184, 1187
BsuI	GTATCC	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	38, 301, 1139
BtsI	GCAGTG	1 cut(s)	841
BtsIMutI	CAGTG	1 cut(s)	841
Cac8I	GCNNGC	1 cut(s)	680
CciI	TCATGA	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	89, 315, 901
CviAII	CATG	8 cut(s)	27, 60, 337, 343, 713, 871, 1069, 1179
CviQI	GTAC	3 cut(s)	89, 315, 901
DdeI	CTNAG	4 cut(s)	360, 606, 766, 1191
DpnI	GATC	3 cut(s)	197, 341, 1076
DpnII	GATC	3 cut(s)	195, 339, 1074
Eco31I	GGTCTC	1 cut(s)	397
Eco91I	GGTNACC	1 cut(s)	988
EcoO65I	GGTNACC	1 cut(s)	988
EcoRII	CCWGG	2 cut(s)	781, 1011
FaeI	CATG	8 cut(s)	30, 63, 340, 346, 716, 874, 1072, 1182
FaqI	GGGAC	2 cut(s)	1140, 1155
FatI	CATG	8 cut(s)	26, 59, 336, 342, 712, 870, 1068, 1178
FauNDI	CATATG	2 cut(s)	11, 674
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	65, 771, 1173, 1176
FokI	GGATG	3 cut(s)	45, 288, 1146
Fsp4HI	GCNGC	4 cut(s)	65, 771, 1173, 1176
FspBI	CTAG	6 cut(s)	50, 167, 179, 689, 761, 1225
GluI	GCNGC	4 cut(s)	65, 771, 1173, 1176
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	8 cut(s)	30, 63, 340, 346, 716, 874, 1072, 1182
HinfI	GANTC	2 cut(s)	101, 500
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	658, 1000
Hpy166II	GTNNAC	1 cut(s)	903
Hpy188I	TCNGA	5 cut(s)	106, 525, 563, 607, 1194
Hpy188III	TCNNGA	4 cut(s)	190, 337, 581, 1084
Hpy8I	GTNNAC	1 cut(s)	903
HpyAV	CCTTC	2 cut(s)	163, 738
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	573, 1122
HpyCH4V	TGCA	7 cut(s)	21, 59, 429, 755, 773, 825, 1172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 607, 668
HpyF3I	CTNAG	4 cut(s)	360, 606, 766, 1191
HpySE526I	ACGT	2 cut(s)	573, 1122
Hsp92II	CATG	8 cut(s)	30, 63, 340, 346, 716, 874, 1072, 1182
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	195, 339, 1074
LmnI	GCTCC	2 cut(s)	87, 253
Lsp1109I	GCAGC	4 cut(s)	76, 757, 1184, 1187
LweI	GCATC	1 cut(s)	1124
MaeI	CTAG	6 cut(s)	50, 167, 179, 689, 761, 1225
MaeII	ACGT	2 cut(s)	573, 1122
MaeIII	GTNAC	4 cut(s)	45, 275, 566, 988
MalI	GATC	3 cut(s)	197, 341, 1076
MboI	GATC	3 cut(s)	195, 339, 1074
MboII	GAAGA	4 cut(s)	253, 925, 994, 1207
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	5 cut(s)	417, 621, 1023, 1183, 1210
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	3 cut(s)	160, 247, 503
MseI	TTAA	3 cut(s)	848, 1106, 1119
MslI	CAYNNNNRTG	2 cut(s)	31, 341
MspA1I	CMGCKG	1 cut(s)	770
MspCI	CTTAAG	1 cut(s)	847
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	783, 1013
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	4 cut(s)	538, 557, 825, 974
MvaI	CCWGG	2 cut(s)	783, 1013
MwoI	GCNNNNNNNGC	3 cut(s)	149, 607, 668
NdeI	CATATG	2 cut(s)	11, 674
NdeII	GATC	3 cut(s)	195, 339, 1074
NlaIII	CATG	8 cut(s)	30, 63, 340, 346, 716, 874, 1072, 1182
NlaIV	GGNNCC	3 cut(s)	83, 726, 1017
NmuCI	GTSAC	2 cut(s)	566, 988
PagI	TCATGA	1 cut(s)	336
PctI	GAATGC	4 cut(s)	538, 557, 825, 974
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	3 cut(s)	311, 387, 438
PkrI	GCNGC	4 cut(s)	66, 772, 1174, 1177
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	781, 1011
PspEI	GGTNACC	1 cut(s)	988
PspGI	CCWGG	2 cut(s)	781, 1011
PspN4I	GGNNCC	3 cut(s)	83, 726, 1017
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	3 cut(s)	90, 316, 902
RsaNI	GTAC	3 cut(s)	89, 315, 901
RseI	CAYNNNNRTG	2 cut(s)	31, 341
SaqAI	TTAA	3 cut(s)	848, 1106, 1119
SatI	GCNGC	4 cut(s)	65, 771, 1173, 1176
Sau3AI	GATC	3 cut(s)	195, 339, 1074
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	2 cut(s)	783, 1013
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	1 cut(s)	1124
SmiMI	CAYNNNNRTG	2 cut(s)	31, 341
SmlI	CTYRAG	3 cut(s)	799, 847, 1082
SmoI	CTYRAG	3 cut(s)	799, 847, 1082
Sse9I	AATT	5 cut(s)	417, 621, 1023, 1183, 1210
SsiI	CCGC	1 cut(s)	986
SspMI	CTAG	6 cut(s)	50, 167, 179, 689, 761, 1225
StyD4I	CCNGG	2 cut(s)	781, 1011
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	576, 1125
TaqI	TCGA	1 cut(s)	940
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	5 cut(s)	417, 621, 1023, 1183, 1210
TatI	WGTACW	2 cut(s)	88, 900
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	848, 1106, 1119
Tru9I	TTAA	3 cut(s)	848, 1106, 1119
TscAI	CASTG	1 cut(s)	848
TseFI	GTSAC	2 cut(s)	566, 988
TseI	GCWGC	4 cut(s)	64, 770, 1172, 1175
Tsp45I	GTSAC	2 cut(s)	566, 988
TspDTI	ATGAA	4 cut(s)	325, 614, 911, 1057
TspGWI	ACGGA	3 cut(s)	941, 987, 1050
TspRI	CASTG	1 cut(s)	848
Van91I	CCANNNNNTGG	3 cut(s)	311, 387, 438
Vha464I	CTTAAG	1 cut(s)	847
XapI	RAATTY	1 cut(s)	1183
XspI	CTAG	6 cut(s)	50, 167, 179, 689, 761, 1225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.