Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

42726383 .. 42728012

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGAGATCAAGATGATGTTGAAAAACATTCAAGCCAAGGTTTTGCTCAAGACTTTTCCTGCATGAACAATAGAGGTCCACAATCTGCCCAAGTCATACCAGTCACAGTGAGTCCCCAAAACATAGATAGTACAACAGACTGGGAAGGTGGTGAGCTCAATCCACAAGATGCTTGGTTACCCCTCACAGAGTCCAGAAAAGGGACCACCTATTCTGCTACATTTCATCTTCTGTCTTCAGGAATTGGAATTCAAGCCCTTTTACTACCTGTTGCTTTTGCTACTCTTGGATGGGAATGGGGAATCATATGCTTGTCAATAGTGTATTCATGGAAGCTCTACACAATGTCACTCCTTGTAGGATTACACGAGTCTGAAACTGGAATTCGCTATAGTAGATACGTCCACCTTGCAGTAACTGCCTTTGGTCCAAAGCTAGGAAAGTTGCTAACTCTGTTCCCAGTAATGTATCTTTCCGGGGGTACGTGTGCGCAGCTAATCATCATAGGAGGTGGAATCATCAGCAATTGTATATTGTACCATGATATGGGCTCTTTCAATATGCAAGGGCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

192

Amino Acids

20.89

Weight (kDa)

5.17

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	67 - 170	4.7e-13	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	249, 384
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	133, 484, 539
AfiI	CCNNNNNNNGG	3 cut(s)	201, 437, 547
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	23, 33, 254, 559
AluBI	AGCT	5 cut(s)	157, 337, 436, 496, 575
AluI	AGCT	5 cut(s)	157, 337, 436, 496, 575
Alw21I	GWGCWC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	249, 384
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	3 cut(s)	77, 204, 428
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	77, 204, 428
BanII	GRGCYC	2 cut(s)	159, 554
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	478
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	495
Bme1390I	CCNGG	1 cut(s)	478
Bme18I	GGWCC	3 cut(s)	77, 204, 428
BmgT120I	GGNCC	3 cut(s)	77, 204, 428
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	478
BmrI	ACTGGG	2 cut(s)	151, 455
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	2 cut(s)	151, 455
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	478
BsaAI	YACGTR	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	37, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 437, 547
Bse1I	ACTGG	4 cut(s)	101, 146, 385, 461
BseDI	CCNNGG	2 cut(s)	37, 477
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	3 cut(s)	201, 437, 547
BseNI	ACTGG	4 cut(s)	101, 146, 385, 461
BseXI	GCAGC	1 cut(s)	505
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	99, 217
BslI	CCNNNNNNNGG	3 cut(s)	201, 437, 547
BsmFI	GGGAC	2 cut(s)	99, 217
Bsp1286I	GDGCHC	2 cut(s)	159, 554
Bsp143I	GATC	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	205
BsrI	ACTGG	4 cut(s)	101, 146, 385, 461
BssECI	CCNNGG	2 cut(s)	37, 477
BssMI	GATC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	109
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	573
BstEII	GGTNACC	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	573
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	493
Cfr13I	GGNCC	3 cut(s)	77, 204, 428
Csp6I	GTAC	3 cut(s)	132, 483, 538
CviAII	CATG	3 cut(s)	64, 330, 542
CviJI	RGCY	8 cut(s)	36, 157, 257, 337, 436, 496, 552, 575
CviKI_1	RGCY	8 cut(s)	36, 157, 257, 337, 436, 496, 552, 575
CviQI	GTAC	3 cut(s)	132, 483, 538
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	159, 554
Eco47I	GGWCC	3 cut(s)	77, 204, 428
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	222
Eco91I	GGTNACC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	177
EcoRI	GAATTC	2 cut(s)	249, 384
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	2 cut(s)	159, 554
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	3 cut(s)	67, 333, 545
FaqI	GGGAC	2 cut(s)	99, 217
FatI	CATG	3 cut(s)	63, 329, 541
FauNDI	CATATG	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	494
FokI	GGATG	1 cut(s)	303
FriOI	GRGCYC	2 cut(s)	159, 554
Fsp4HI	GCNGC	1 cut(s)	494
FspBI	CTAG	1 cut(s)	437
FspI	TGCGCA	1 cut(s)	492
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	1 cut(s)	494
HapII	CCGG	1 cut(s)	477
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	3 cut(s)	67, 333, 545
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HindIII	AAGCTT	1 cut(s)	573
HinfI	GANTC	5 cut(s)	112, 191, 303, 371, 516
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	80, 406
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	4 cut(s)	11, 50, 195, 240
Hpy8I	GTNNAC	2 cut(s)	80, 406
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	402, 485
HpyCH4V	TGCA	3 cut(s)	63, 413, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpySE526I	ACGT	2 cut(s)	402, 485
Hsp92II	CATG	3 cut(s)	67, 333, 545
HspAI	GCGC	1 cut(s)	491
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	9 cut(s)	73, 114, 127, 208, 225, 282, 366, 474, 490
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	402, 485
MaeIII	GTNAC	4 cut(s)	103, 177, 348, 415
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	221, 228
MfeI	CAATTG	1 cut(s)	526
MhlI	GDGCHC	2 cut(s)	159, 554
MluCI	AATT	4 cut(s)	243, 249, 384, 526
MlyI	GAGTC	3 cut(s)	121, 200, 380
MnlI	CCTC	3 cut(s)	68, 194, 503
MseI	TTAA	1 cut(s)	577
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	478
MunI	CAATTG	1 cut(s)	526
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	1 cut(s)	478
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	67, 333, 545
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	103, 348
NsbI	TGCGCA	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	303, 516
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	495
PleI	GAGTC	3 cut(s)	120, 199, 379
PpsI	GAGTC	3 cut(s)	120, 199, 379
Ppu21I	YACGTR	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	3 cut(s)	77, 204, 428
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	133, 484, 539
RsaNI	GTAC	3 cut(s)	132, 483, 538
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	1 cut(s)	494
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	3 cut(s)	77, 204, 428
SchI	GAGTC	3 cut(s)	121, 200, 380
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	2 cut(s)	159, 554
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	3 cut(s)	77, 204, 428
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	4 cut(s)	243, 249, 384, 526
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	405, 488
TasI	AATT	4 cut(s)	243, 249, 384, 526
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	303, 516
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	103, 348
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	2 cut(s)	103, 348
TspDTI	ATGAA	3 cut(s)	80, 215, 318
TspRI	CASTG	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	3 cut(s)	77, 204, 428
XapI	RAATTY	2 cut(s)	249, 384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.