Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Forward (+)

26651501 .. 26653573

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013132

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGAGATCAAGATGATGTTGAAAAACATTCAAGCCAAGGTTTTGCTCAAGAGTTTTCCTGCATGAACAATAGAGGCCCACAATCTGCCCAAGTCATACCAGTCACAGTGAGTCCCCAAAACATAGATAGTACAACAGACTGGGAAGGTGGTGAGCTCAATCCACAAGATGCTTGGTTACCCCTCACAGAGTCCAGAAAAGGGACCACTTATTCTGCTACATTTCATCTTCTGTCTTCAGGAATTGGAATTCAAGCCCTTTTACTACCTGTTGCTTTTGCTACTCTTGGATGGGAATGGGGAATCATATGCTTGTCAATAGTGTATTCATGGAAGCTCTACACAATGTCACTCCTTGTAGGATTACACGAGTCTGAATCTGGAATTCGCTATAGTAGATACGTCCACCTTGCAGTAACTGCCTTTGGTCCAAAGCTAGGGAAGTTGCAAACTCTGTTCCCAGTAATGTATCTTTCCGGGGGTACGTGTGCGCAGCTAATCATCATAGGAGGTGGAATCATAAAGCTTCTAGTAAGAACTGTGTGCAAGGATGGTGCAACTTGTGATCCCAATTCAATGCATGGTATATTGCGCTTCTTTGTGTTTATGTTCATGGCTATCTGTCTAGCCGAGAACTTTCCCAACTTGAACTCCGTAGCTGGAGTCTCTGTGATTGGTACCATTACAGCAATCGTATATTGTACCATGATATGGGCTTCAATCGGCAAGGGCAGGCTTAATGATGTATCGTATGAGACACCAGCTACGAAGTCTACCATGGAGTCCTTCAGTGATGTACTGAATTCAGTTGGCATCATTTTCCTTGCATTCAGAGGTCAGAATGTTATCCTTGAGATACAGGGGACATTGCCATCAAACCCAAAACATCCTCCTCATAAGAGAATGTGGAGTGGAGTGACTATATCACATGTACTCATAGCCATGTGTTTGTTTCCTCTTGCACTTGGTGGATATTGGCCTTATGGAAACAAGGTACCTTTCAAAAATGCACAAGTGGTGAAAGCAGTTTCTCAATTCCACGGAAAAAAACATCTCAGAATTTGTTCCGGGACAACTTTGCATACTGGTACTGATAAATTGCGTAGCTACATTCCAAATCTATGTCATGGTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

380

Amino Acids

41.4

Weight (kDa)

8.62

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	67 - 333	7.4e-36	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	492
Acc65I	GGTACC	2 cut(s)	677, 994
AccB1I	GGYRCC	2 cut(s)	677, 994
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccI	GTMKAC	1 cut(s)	773
AclWI	GGATC	1 cut(s)	560
AcsI	RAATTY	4 cut(s)	249, 384, 802, 1059
AcuI	CTGAAG	2 cut(s)	222, 772
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	8 cut(s)	133, 484, 679, 703, 798, 933, 996, 1090
AfiI	CCNNNNNNNGG	3 cut(s)	201, 437, 711
AflIII	ACRYGT	2 cut(s)	485, 928
AgsI	TTSAA	7 cut(s)	23, 33, 254, 576, 649, 720, 1003
AluBI	AGCT	8 cut(s)	157, 337, 436, 496, 526, 659, 764, 1107
AluI	AGCT	8 cut(s)	157, 337, 436, 496, 526, 659, 764, 1107
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	670, 749
AlwI	GGATC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	76, 977
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	4 cut(s)	249, 384, 802, 1059
Asp700I	GAANNNNTTC	1 cut(s)	1063
Asp718I	GGTACC	2 cut(s)	677, 994
AspLEI	GCGC	2 cut(s)	493, 594
AspS9I	GGNCC	3 cut(s)	77, 204, 428
AsuC2I	CCSGG	2 cut(s)	478, 1069
AsuHPI	GGTGA	2 cut(s)	164, 1030
AvaII	GGWCC	2 cut(s)	204, 428
BanI	GGYRCC	2 cut(s)	677, 994
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	3 cut(s)	285, 545, 880
BcnI	CCSGG	2 cut(s)	478, 1069
BcoDI	GTCTC	2 cut(s)	670, 749
BfaI	CTAG	3 cut(s)	437, 530, 626
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	495
Bme1390I	CCNGG	2 cut(s)	478, 1069
Bme18I	GGWCC	2 cut(s)	204, 428
BmgT120I	GGNCC	3 cut(s)	77, 204, 428
BmiI	GGNNCC	3 cut(s)	205, 679, 996
BmrFI	CCNGG	2 cut(s)	478, 1069
BmrI	ACTGGG	2 cut(s)	151, 455
BmsI	GCATC	2 cut(s)	160, 822
BmuI	ACTGGG	2 cut(s)	151, 455
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	681
BpuEI	CTTGAG	2 cut(s)	33, 872
BpuMI	CCSGG	2 cut(s)	478, 1069
BsaAI	YACGTR	1 cut(s)	486
BsaJI	CCNNGG	4 cut(s)	37, 477, 777, 1039
BsaXI	ACNNNNNCTCC	4 cut(s)	635, 654, 665, 684
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 437, 711
Bse1I	ACTGG	4 cut(s)	101, 146, 461, 1090
Bse3DI	GCAATG	1 cut(s)	866
BseDI	CCNNGG	4 cut(s)	37, 477, 777, 1039
BseGI	GGATG	3 cut(s)	296, 556, 886
BseLI	CCNNNNNNNGG	3 cut(s)	201, 437, 711
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	1069
BseNI	ACTGG	4 cut(s)	101, 146, 461, 1090
BseRI	GAGGAG	1 cut(s)	882
BseXI	GCAGC	1 cut(s)	505
BshFI	GGCC	2 cut(s)	78, 979
BshNI	GGYRCC	2 cut(s)	677, 994
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	477, 1068
BslFI	GGGAC	4 cut(s)	99, 217, 877, 1084
BslI	CCNNNNNNNGG	3 cut(s)	201, 437, 711
BsmAI	GTCTC	2 cut(s)	670, 749
BsmFI	GGGAC	4 cut(s)	99, 217, 877, 1084
BsmI	GAATGC	1 cut(s)	827
BsnI	GGCC	2 cut(s)	78, 979
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	7, 565
Bsp19I	CCATGG	1 cut(s)	777
BspANI	GGCC	2 cut(s)	78, 979
BspCNI	CTCAG	1 cut(s)	1068
BspLI	GGNNCC	3 cut(s)	205, 679, 996
BspPI	GGATC	1 cut(s)	560
BspT107I	GGYRCC	2 cut(s)	677, 994
BsrDI	GCAATG	1 cut(s)	866
BsrI	ACTGG	4 cut(s)	101, 146, 461, 1090
BssECI	CCNNGG	4 cut(s)	37, 477, 777, 1039
BssMI	GATC	2 cut(s)	7, 565
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	37, 777
Bst2BI	CACGAG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	109, 541
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	1 cut(s)	1055
BstDSI	CCRYGG	2 cut(s)	777, 1039
BstEII	GGTNACC	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	296, 556, 886
BstHHI	GCGC	2 cut(s)	493, 594
BstKTI	GATC	2 cut(s)	10, 568
BstMAI	GTCTC	2 cut(s)	670, 749
BstMBI	GATC	2 cut(s)	7, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	932
BstPI	GGTNACC	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	476, 1067
BstSFI	CTRYAG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	78, 979
BtgI	CCRYGG	2 cut(s)	777, 1039
BtsCI	GGATG	3 cut(s)	296, 556, 886
BtsIMutI	CAGTG	2 cut(s)	114, 796
Cac8I	GCNNGC	1 cut(s)	734
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	2 cut(s)	493, 594
Cfr13I	GGNCC	3 cut(s)	77, 204, 428
Csp6I	GTAC	8 cut(s)	132, 483, 678, 702, 797, 932, 995, 1089
CviAII	CATG	9 cut(s)	64, 330, 581, 613, 706, 778, 929, 943, 1127
CviQI	GTAC	8 cut(s)	132, 483, 678, 702, 797, 932, 995, 1089
DdeI	CTNAG	1 cut(s)	1055
DpnI	GATC	2 cut(s)	9, 567
DpnII	GATC	2 cut(s)	7, 565
DraIII	CACNNNGTG	1 cut(s)	968
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	2 cut(s)	37, 777
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	204, 428
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	222, 772
Eco91I	GGTNACC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	177
EcoRI	GAATTC	3 cut(s)	249, 384, 802
EcoT14I	CCWWGG	2 cut(s)	37, 777
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	2 cut(s)	37, 777
FaeI	CATG	9 cut(s)	67, 333, 584, 616, 709, 781, 932, 946, 1130
FaqI	GGGAC	4 cut(s)	99, 217, 877, 1084
FatI	CATG	9 cut(s)	63, 329, 580, 612, 705, 777, 928, 942, 1126
FauNDI	CATATG	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	773
Fnu4HI	GCNGC	1 cut(s)	494
FokI	GGATG	3 cut(s)	303, 563, 873
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	494
FspBI	CTAG	3 cut(s)	437, 530, 626
FspI	TGCGCA	1 cut(s)	492
GlaI	GCGC	2 cut(s)	492, 593
GluI	GCNGC	1 cut(s)	494
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	78, 979
HapII	CCGG	2 cut(s)	477, 1068
HhaI	GCGC	2 cut(s)	493, 594
Hin1II	CATG	9 cut(s)	67, 333, 584, 616, 709, 781, 932, 946, 1130
Hin6I	GCGC	2 cut(s)	491, 592
HinP1I	GCGC	2 cut(s)	491, 592
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	8 cut(s)	112, 191, 303, 371, 377, 516, 663, 782
HpaII	CCGG	2 cut(s)	477, 1068
HphI	GGTGA	2 cut(s)	164, 1030
Hpy166II	GTNNAC	2 cut(s)	406, 774
Hpy188I	TCNGA	4 cut(s)	376, 833, 840, 1058
Hpy188III	TCNNGA	5 cut(s)	11, 50, 195, 240, 381
Hpy8I	GTNNAC	2 cut(s)	406, 774
HpyAV	CCTTC	2 cut(s)	140, 796
HpyCH4III	ACNGT	2 cut(s)	109, 541
HpyCH4IV	ACGT	2 cut(s)	402, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	1055
HpySE526I	ACGT	2 cut(s)	402, 485
Hsp92II	CATG	9 cut(s)	67, 333, 584, 616, 709, 781, 932, 946, 1130
HspAI	GCGC	2 cut(s)	491, 592
KpnI	GGTACC	2 cut(s)	681, 998
Kzo9I	GATC	2 cut(s)	7, 565
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	2 cut(s)	160, 822
MaeI	CTAG	3 cut(s)	437, 530, 626
MaeII	ACGT	2 cut(s)	402, 485
MaeIII	GTNAC	5 cut(s)	103, 177, 348, 415, 916
MalI	GATC	2 cut(s)	9, 567
MboI	GATC	2 cut(s)	7, 565
MboII	GAAGA	2 cut(s)	221, 228
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	8 cut(s)	243, 249, 384, 571, 802, 1034, 1059, 1097
MlyI	GAGTC	5 cut(s)	121, 200, 380, 672, 791
MnlI	CCTC	7 cut(s)	68, 194, 503, 827, 900, 903, 966
Mph1103I	ATGCAT	1 cut(s)	582
MroXI	GAANNNNTTC	1 cut(s)	1063
MseI	TTAA	1 cut(s)	738
MslI	CAYNNNNRTG	1 cut(s)	941
MspI	CCGG	2 cut(s)	477, 1068
MspR9I	CCNGG	2 cut(s)	478, 1069
Mva1269I	GAATGC	1 cut(s)	827
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	2 cut(s)	478, 1069
NcoI	CCATGG	1 cut(s)	777
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	2 cut(s)	7, 565
NlaIII	CATG	9 cut(s)	67, 333, 584, 616, 709, 781, 932, 946, 1130
NlaIV	GGNNCC	3 cut(s)	205, 679, 996
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	3 cut(s)	103, 348, 916
NsbI	TGCGCA	1 cut(s)	492
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	1 cut(s)	932
PciI	ACATGT	1 cut(s)	928
PctI	GAATGC	1 cut(s)	827
PdmI	GAANNNNTTC	1 cut(s)	1063
PfeI	GAWTC	3 cut(s)	303, 377, 516
PflMI	CCANNNNNTGG	1 cut(s)	711
PfoI	TCCNGGA	1 cut(s)	1067
PkrI	GCNGC	1 cut(s)	495
PleI	GAGTC	5 cut(s)	120, 199, 379, 671, 790
PpsI	GAGTC	5 cut(s)	120, 199, 379, 671, 790
Ppu21I	YACGTR	1 cut(s)	486
PscI	ACATGT	1 cut(s)	928
Psp124BI	GAGCTC	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	205, 679, 996
PspPI	GGNCC	3 cut(s)	77, 204, 428
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	8 cut(s)	133, 484, 679, 703, 798, 933, 996, 1090
RsaNI	GTAC	8 cut(s)	132, 483, 678, 702, 797, 932, 995, 1089
RseI	CAYNNNNRTG	1 cut(s)	941
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	7, 565
Sau96I	GGNCC	3 cut(s)	77, 204, 428
SchI	GAGTC	5 cut(s)	121, 200, 380, 672, 791
ScrFI	CCNGG	2 cut(s)	478, 1069
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	160, 822
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	2 cut(s)	204, 428
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	2 cut(s)	48, 851
SmoI	CTYRAG	2 cut(s)	48, 851
Sse9I	AATT	8 cut(s)	243, 249, 384, 571, 802, 1034, 1059, 1097
SspMI	CTAG	3 cut(s)	437, 530, 626
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	476, 1067
StyI	CCWWGG	2 cut(s)	37, 777
TaaI	ACNGT	2 cut(s)	109, 541
TaiI	ACGT	2 cut(s)	405, 488
TasI	AATT	8 cut(s)	243, 249, 384, 571, 802, 1034, 1059, 1097
TatI	WGTACW	3 cut(s)	131, 796, 931
TfiI	GAWTC	3 cut(s)	303, 377, 516
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	2 cut(s)	114, 796
TseFI	GTSAC	3 cut(s)	103, 348, 916
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	3 cut(s)	103, 348, 916
TspDTI	ATGAA	4 cut(s)	80, 215, 318, 601
TspGWI	ACGGA	2 cut(s)	643, 1056
TspRI	CASTG	2 cut(s)	114, 796
Van91I	CCANNNNNTGG	1 cut(s)	711
VpaK11BI	GGWCC	2 cut(s)	204, 428
XapI	RAATTY	4 cut(s)	249, 384, 802, 1059
XceI	RCATGY	1 cut(s)	932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	773
XmnI	GAANNNNTTC	1 cut(s)	1063
XspI	CTAG	3 cut(s)	437, 530, 626
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.