Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

42725477 .. 42726345

Gene Structure 869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGTCCTTCAGTGATGTACTGAATTCAGTTGGCATCATTTTCCTTGCATTCAGAGGTCAGAATGTTATCCTTGAGATACAGGGGACATTGCCATCAGACCCAAAACATCCTTCTCATAAGAGAATGTGGAGTGGAGTGACTATATCACATGTACTCATAGCCATGTGTTTATTTCCTCTTGCACTTGGTGGATATTGGGCTTATGGAAACAAGGTACCTTTCAAAAATGCACAAGTGGTGAAAGCAGTTTCTCAATTCCATGGAAAAAACATCTCAGAATTTGTTCCGGGACTATTTTGCATACTGGTACTGATAAATTGCGTAGCTACATTCCAAATCTATGTCATGGTAGTTTTTGACAACATGGAGATGAAGTACACCAGTAAGAAGAAGGAACCGTGCCCGAGATGGCTTCGGATAGGTTTTCGCCTTTTCTTTGGAGGACTCGCATTCTTTGTGGCAGTGGCCTTGCCATTCCTGGAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

163

Amino Acids

18.34

Weight (kDa)

9.3

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	5 - 162	1.7e-19	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	25, 281
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	5 cut(s)	21, 156, 219, 312, 380
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	480
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	1 cut(s)	468
ApoI	RAATTY	2 cut(s)	25, 281
Asp700I	GAANNNNTTC	1 cut(s)	285
Asp718I	GGTACC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	217
BccI	CCATC	2 cut(s)	103, 405
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	479
Bme1390I	CCNGG	2 cut(s)	291, 482
BmeT110I	CYCGRG	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	219, 399
BmrFI	CCNGG	2 cut(s)	291, 482
BmsI	GCATC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bse1I	ACTGG	2 cut(s)	312, 384
Bse3DI	GCAATG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	312, 384
BseSI	GKGCMC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	470
BshNI	GGYRCC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	2 cut(s)	100, 306
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	100, 306
BsmI	GAATGC	2 cut(s)	50, 452
BsnI	GGCC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp19I	CCATGG	1 cut(s)	262
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	219, 399
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	312, 384
BssECI	CCNNGG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	479
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	289, 480
BstSLI	GKGCMC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	19, 471
Csp6I	GTAC	5 cut(s)	20, 155, 218, 311, 379
CviAII	CATG	5 cut(s)	152, 166, 263, 349, 367
CviJI	RGCY	5 cut(s)	164, 203, 329, 415, 470
CviKI_1	RGCY	5 cut(s)	164, 203, 329, 415, 470
CviQI	GTAC	5 cut(s)	20, 155, 218, 311, 379
DdeI	CTNAG	1 cut(s)	277
DraIII	CACNNNGTG	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	262
Eco31I	GGTCTC	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	5 cut(s)	155, 169, 266, 352, 370
FaqI	GGGAC	2 cut(s)	100, 306
FatI	CATG	5 cut(s)	151, 165, 262, 348, 366
FokI	GGATG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	5 cut(s)	155, 169, 266, 352, 370
HinfI	GANTC	2 cut(s)	5, 447
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	5 cut(s)	56, 63, 100, 280, 420
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	3 cut(s)	19, 123, 388
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	50, 185, 233, 303
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	5 cut(s)	155, 169, 266, 352, 370
KpnI	GGTACC	1 cut(s)	221
LpnPI	CCDG	5 cut(s)	68, 293, 303, 397, 467
LweI	GCATC	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	4 cut(s)	25, 257, 281, 319
MlyI	GAGTC	2 cut(s)	14, 441
MnlI	CCTC	3 cut(s)	50, 189, 437
MroXI	GAANNNNTTC	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	164, 371
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	291, 482
Mva1269I	GAATGC	2 cut(s)	50, 452
MvaI	CCWGG	1 cut(s)	482
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	262
NlaIII	CATG	5 cut(s)	155, 169, 266, 352, 370
NlaIV	GGNNCC	2 cut(s)	219, 399
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	155
PciI	ACATGT	1 cut(s)	151
PctI	GAATGC	2 cut(s)	50, 452
PdmI	GAANNNNTTC	1 cut(s)	285
PfoI	TCCNGGA	2 cut(s)	289, 480
PleI	GAGTC	2 cut(s)	13, 441
PpsI	GAGTC	2 cut(s)	13, 441
PscI	ACATGT	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	2 cut(s)	219, 399
RsaI	GTAC	5 cut(s)	21, 156, 219, 312, 380
RsaNI	GTAC	5 cut(s)	20, 155, 218, 311, 379
RseI	CAYNNNNRTG	2 cut(s)	164, 371
SchI	GAGTC	2 cut(s)	14, 441
ScrFI	CCNGG	2 cut(s)	291, 482
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	6 cut(s)	61, 219, 223, 331, 427, 491
SfaNI	GCATC	1 cut(s)	45
SmiMI	CAYNNNNRTG	2 cut(s)	164, 371
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	25, 257, 281, 319
StyD4I	CCNGG	2 cut(s)	289, 480
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	402
TasI	AATT	4 cut(s)	25, 257, 281, 319
TatI	WGTACW	3 cut(s)	19, 154, 378
TscAI	CASTG	2 cut(s)	19, 471
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	19, 471
XapI	RAATTY	2 cut(s)	25, 281
XceI	RCATGY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.