Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Forward (+)

17643835 .. 17645183

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0126900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCCTCTGCCGAGATCGAGTTCCGTTGCTTCGTCGGAGGGCTCGCCTGGGCCACCGACAACGAGGCCCTTGAAAGGGCCTTTGCTCCTTTTGGCGAGATCATCGAATCGAAGATCATCAACGACCGCGAGACCGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAGCAACGAGAAGGCCATGAGGGACGCGATCGAAGGCATGAACGGCCAGGACCTTGACGGCCGTAACATCACCGTCAACGAGGCTCAGTCCCGCGGAAGCGGTGGCGGTGGCGGCGGTGGTGGATACGGTGGCAGCCGGGGAGGCGGTGGCTACGGAAGTGGCGGTGGCGGTTACGGCGGCCGTCGTGAAGGCGGAGGCGGTGGCTACGGAAGTGGCGGTGGAGGTTATGGCGGTGGTGGCCGTCGTGAGGGTGGAGGCGGTGGATACAGCCGTGGTGGTGGAAGCTATGGAAGCGGTGGTGGTGGTGGCTACGGAGGTGGCGGCCGGGACCGTGGATCTGACGGCGGCAGCTGGAGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

176

Amino Acids

17.14

Weight (kDa)

6.35

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	11 - 80	3.2e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AccII	CGCG	3 cut(s)	129, 194, 261
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	5 cut(s)	211, 226, 346, 406, 490
AcuI	CTGAAG	1 cut(s)	151
AfiI	CCNNNNNNNGG	3 cut(s)	75, 76, 415
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	47, 213
AluBI	AGCT	2 cut(s)	453, 519
AluI	AGCT	2 cut(s)	453, 519
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	511
ApeKI	GCWGC	2 cut(s)	300, 516
AspS9I	GGNCC	5 cut(s)	51, 67, 78, 217, 496
AsuC2I	CCSGG	2 cut(s)	305, 494
AsuHPI	GGTGA	2 cut(s)	154, 229
AvaII	GGWCC	2 cut(s)	217, 496
BaeI	ACNNNNGTAYC	2 cut(s)	424, 457
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	312
BceAI	ACGGC	8 cut(s)	213, 226, 241, 333, 358, 393, 423, 526
BciT130I	CCWGG	2 cut(s)	49, 215
BciVI	GTATCC	2 cut(s)	284, 425
BcnI	CCSGG	2 cut(s)	305, 494
BcoDI	GTCTC	1 cut(s)	125
BfuI	GTATCC	2 cut(s)	284, 425
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	6 cut(s)	280, 301, 346, 490, 514, 517
BlsI	GCNGC	6 cut(s)	281, 302, 347, 491, 515, 518
Bme1390I	CCNGG	4 cut(s)	49, 215, 305, 494
Bme18I	GGWCC	2 cut(s)	217, 496
BmgT120I	GGNCC	5 cut(s)	51, 67, 78, 217, 496
BmiI	GGNNCC	1 cut(s)	497
BmrFI	CCNGG	4 cut(s)	49, 215, 305, 494
BpuMI	CCSGG	2 cut(s)	305, 494
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	5 cut(s)	48, 259, 304, 439, 499
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 76, 415
BseBI	CCWGG	2 cut(s)	49, 215
BseDI	CCNNGG	5 cut(s)	48, 259, 304, 439, 499
BseLI	CCNNNNNNNGG	3 cut(s)	75, 76, 415
BseMII	CTCAG	1 cut(s)	266
BseX3I	CGGCCG	3 cut(s)	226, 346, 490
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	3 cut(s)	129, 194, 261
Bsh1285I	CGRYCG	5 cut(s)	127, 198, 229, 349, 493
BsiEI	CGRYCG	5 cut(s)	127, 198, 229, 349, 493
BsiSI	CCGG	3 cut(s)	135, 304, 493
BslFI	GGGAC	3 cut(s)	203, 241, 509
BslI	CCNNNNNNNGG	3 cut(s)	75, 76, 415
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	3 cut(s)	203, 241, 509
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	15, 99, 114, 195, 503
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	3 cut(s)	129, 194, 261
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	511
BspTNI	GGTCTC	1 cut(s)	125
BssECI	CCNNGG	5 cut(s)	48, 259, 304, 439, 499
BssMI	GATC	5 cut(s)	15, 99, 114, 195, 503
Bst2UI	CCWGG	2 cut(s)	49, 215
Bst4CI	ACNGT	3 cut(s)	241, 296, 500
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	3 cut(s)	259, 439, 499
BstFNI	CGCG	3 cut(s)	129, 194, 261
BstKTI	GATC	5 cut(s)	18, 102, 117, 198, 506
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	5 cut(s)	15, 99, 114, 195, 503
BstMCI	CGRYCG	5 cut(s)	127, 198, 229, 349, 493
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 279, 309, 342, 405, 459
BstNI	CCWGG	2 cut(s)	49, 215
BstSCI	CCNGG	4 cut(s)	47, 213, 303, 492
BstUI	CGCG	3 cut(s)	129, 194, 261
BstV1I	GCAGC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BstZI	CGGCCG	3 cut(s)	226, 346, 490
BsuI	GTATCC	2 cut(s)	284, 425
BtgI	CCRYGG	3 cut(s)	259, 439, 499
Cac8I	GCNNGC	1 cut(s)	45
Cfr13I	GGNCC	5 cut(s)	51, 67, 78, 217, 496
Cfr42I	CCGCGG	1 cut(s)	262
CseI	GACGC	1 cut(s)	200
CviAII	CATG	2 cut(s)	184, 205
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	5 cut(s)	17, 101, 116, 197, 505
DpnII	GATC	5 cut(s)	15, 99, 114, 195, 503
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	5 cut(s)	211, 226, 346, 406, 490
EagI	CGGCCG	3 cut(s)	226, 346, 490
EciI	GGCGGA	1 cut(s)	375
EclXI	CGGCCG	3 cut(s)	226, 346, 490
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	217, 496
Eco52I	CGGCCG	3 cut(s)	226, 346, 490
Eco57I	CTGAAG	1 cut(s)	151
EcoO109I	RGGNCCY	3 cut(s)	67, 78, 217
EcoRII	CCWGG	2 cut(s)	47, 213
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	2 cut(s)	187, 208
FaiI	YATR	4 cut(s)	185, 206, 396, 456
FaqI	GGGAC	3 cut(s)	203, 241, 509
FatI	CATG	2 cut(s)	183, 204
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	6 cut(s)	280, 301, 346, 490, 514, 517
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	6 cut(s)	280, 301, 346, 490, 514, 517
GluI	GCNGC	6 cut(s)	280, 301, 346, 490, 514, 517
HapII	CCGG	3 cut(s)	135, 304, 493
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	187, 208
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	107, 150, 156
HpaII	CCGG	3 cut(s)	135, 304, 493
HphI	GGTGA	2 cut(s)	154, 229
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	38, 155, 508
Hpy188III	TCNNGA	2 cut(s)	353, 413
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	3 cut(s)	38, 354, 414
HpyAV	CCTTC	5 cut(s)	132, 172, 175, 194, 350
HpyCH4III	ACNGT	3 cut(s)	241, 296, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 279, 309, 342, 405, 459
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	187, 208
KspI	CCGCGG	1 cut(s)	262
Kzo9I	GATC	5 cut(s)	15, 99, 114, 195, 503
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	34, 61, 148, 200, 227, 317, 505, 506
Lsp1109I	GCAGC	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	160, 230, 338
MalI	GATC	5 cut(s)	17, 101, 116, 197, 505
MboI	GATC	5 cut(s)	15, 99, 114, 195, 503
MboII	GAAGA	1 cut(s)	124
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	16
MspA1I	CMGCKG	2 cut(s)	261, 519
MspI	CCGG	3 cut(s)	135, 304, 493
MspR9I	CCNGG	4 cut(s)	49, 215, 305, 494
MvaI	CCWGG	2 cut(s)	49, 215
MvnI	CGCG	3 cut(s)	129, 194, 261
MwoI	GCNNNNNNNGC	6 cut(s)	210, 279, 309, 342, 405, 459
NciI	CCSGG	2 cut(s)	305, 494
NdeII	GATC	5 cut(s)	15, 99, 114, 195, 503
NlaIII	CATG	2 cut(s)	187, 208
NlaIV	GGNNCC	1 cut(s)	497
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	107, 150, 156
PkrI	GCNGC	6 cut(s)	281, 302, 347, 491, 515, 518
Ple19I	CGATCG	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	47, 213
PspGI	CCWGG	2 cut(s)	47, 213
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	5 cut(s)	51, 67, 78, 217, 496
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	503
PvuI	CGATCG	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	519
SacII	CCGCGG	1 cut(s)	262
SatI	GCNGC	6 cut(s)	280, 301, 346, 490, 514, 517
Sau3AI	GATC	5 cut(s)	15, 99, 114, 195, 503
Sau96I	GGNCC	5 cut(s)	51, 67, 78, 217, 496
ScrFI	CCNGG	4 cut(s)	49, 215, 305, 494
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	143, 167, 222, 394, 455, 487, 521
Sfr303I	CCGCGG	1 cut(s)	262
SgrBI	CCGCGG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	217, 496
StyD4I	CCNGG	4 cut(s)	47, 213, 303, 492
TaaI	ACNGT	3 cut(s)	241, 296, 500
TaqI	TCGA	4 cut(s)	18, 105, 110, 198
TauI	GCSGC	4 cut(s)	282, 348, 492, 516
TfiI	GAWTC	3 cut(s)	107, 150, 156
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	300, 516
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	4 cut(s)	14, 336, 390, 495
VpaK11BI	GGWCC	2 cut(s)	217, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.