Rroxscaffold_7G00188730

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
28393433 .. 28396090
2658 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00188730.1

Sequence Viewer

Length: 1578 bp
ATGGGAGAAGTGGTTATTGAAACAAACTACATGGGAGATTTACATTTAGCACAAGCTATGGACCCTTCCTTTAACACCGCCATGGGTACAAGCTCACGGTCTGCTGCTGTAGTCATTCCCATGACAATTAGTTCCAGTGCAAACGAAGATGGTACAAATCCAGGAGGCGTAGGTGGTGAACTCGATAAGCAGGATGCTTGGCTGCCTCTCACAGAATCCAGGAATGGCAGTACCTATTCCGTGACGTTTCATCTACTTTGTTCAGGAATTGGGACTCAAGCTCTTTCACTCCCTGTTGCATTCGCCGCTCTTGGATGGGCATGGGGATGTATATGCTTGTTACTAGCGTTTGCATGGCAGCTCTACACTATACGGCTCCTTGTACTATCCCACGAATCTGATACCGGAACTCGTTATAGTAGATACCTCCAACTTGCTATTAGAGCCTTCGGTCAAAAGCTAGGGAAGTCGCTAGTAATGTTCCCGATGATCTATCTATCAAATGGTGCTTGTGTCCAACTTATTATCGCAGGAGGTCTAACAATGGAGCTTTTCTTCAAAACCGTGTGTAACGATGGGGCTACTACTTATTGTCATCCAATGACTGGTACAGAGTGCTTCTTGGTGTTCATGATCATGGCTATTATTGTGGCTCAGTTTCCCAACTTGAACTCCATAGCTTGGGTCTCTTTGATTGGTTCTATCACAGCAATTGTATATTGCACCATCATCTGGTCTATTTCAGTTGGCAAGGGCAGACCTAATGGTATATCATACAATCCACCAGAAATGGAGTCTAATATGGATAGATTTGGTCGGTTACTGAATGCGATTGGCATTGTGTTTTTGGCATTCAGAGGTCACAACGTCATTCTTGAAATACAGACGCTGTTTGAGTTTGCCATGCATCTATGTAAAGCTAACGTTTTTCAACTGATGCAGGGAACATTGCCATCAGAGCCAAAACACCCAATTCATAAGCGAATGTGGAGAGGGGTGATTATATCGTATGCTATCATTGCCATATGCTTGCTTCCTCTAGCCATAGCTGGATTTTGGGCACATGGAAACAAGGTGCCCTCCTCATCAGTTTTATCAATATCTGCAATACTAGGCTCAGCTGCACAACTACCTGGACACAATAACAACTCAAGGTATGTTCTGGGAGTAATCTGCATTCTTGTAATAATACACTGCTTAAGCACATTTCAAATCTATGGCATGGTAGCCTTTGACAACTTGGAGATGAAGTACACTATGAGGAAGAACAAGCCGTGTCCAAGATGGCTTCGAGTAGCTTTCCGTTTTTTGTTTGGAGGATTGGCATTCTTTATAGCGGTGACCTTTCCGTTCTTCGTAAGCCTGGCACCTCTAATTGGAGGTTTGACATTGCCTATGGCTTATGCTTATCCGTGTTTCATGTGGATCACACTCAAGAAACCGAAGCCGAAAGGTTTAATGTGGTATATTAACGTGGGACTTGGATGCTTGGGACTGGTTTTGAGTGTTGTTTTAGTGGTTGCAGCAGCATGGAATTTAGCTCAGAAAGATCTAAATGCCAATTTCTTCAAGCCCTAG

Protein Analysis

525

Amino Acids

57.53

Weight (kDa)

8.96

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 75 - 296 7e-30 Transmembrane amino acid transporter protein
Aa_trans PF01490 320 - 508 7e-20 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1075, 1366
AccB7I CCANNNNNTGG 3 cut(s) 605, 681, 732
AccBSI CCGCTC 1 cut(s) 308
AciI CCGC 3 cut(s) 78, 306, 1337
AclI AACGTT 1 cut(s) 924
AclWI GGATC 1 cut(s) 1433
AcsI RAATTY 1 cut(s) 1534
AfaI GTAC 6 cut(s) 88, 154, 232, 384, 610, 1253
AfiI CCNNNNNNNGG 4 cut(s) 605, 681, 732, 1376
AflII CTTAAG 1 cut(s) 1198
AgsI TTSAA 7 cut(s) 20, 559, 670, 878, 932, 1211, 1570
AjnI CCWGG 4 cut(s) 160, 218, 1132, 1362
Alw26I GTCTC 1 cut(s) 691
AlwI GGATC 1 cut(s) 1433
AlwNI CAGNNNCTG 1 cut(s) 889
ApeKI GCWGC 6 cut(s) 104, 202, 358, 1121, 1523, 1526
ApoI RAATTY 1 cut(s) 1534
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 3 cut(s) 188, 1009, 1351
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 2 cut(s) 1063, 1080
BanI GGYRCC 2 cut(s) 1075, 1366
BbvI GCAGC 6 cut(s) 91, 189, 370, 1108, 1535, 1538
BccI CCATC 6 cut(s) 143, 309, 569, 734, 961, 1278
BceAI ACGGC 2 cut(s) 389, 1258
BciT130I CCWGG 4 cut(s) 162, 220, 1134, 1364
BclI TGATCA 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 6 cut(s) 344, 461, 473, 1040, 1112, 1576
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 1 cut(s) 1198
BglII AGATCT 1 cut(s) 1549
BisI GCNGC 7 cut(s) 105, 203, 306, 359, 1122, 1524, 1527
BlpI GCTNAGC 1 cut(s) 1117
BlsI GCNGC 7 cut(s) 106, 204, 307, 360, 1123, 1525, 1528
Bme1390I CCNGG 4 cut(s) 162, 220, 1134, 1364
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 4 cut(s) 63, 377, 1077, 1368
BmrFI CCNGG 4 cut(s) 162, 220, 1134, 1364
BmsI GCATC 4 cut(s) 184, 916, 927, 1475
Bpu1102I GCTNAGC 1 cut(s) 1117
BpuEI CTTGAG 3 cut(s) 261, 1135, 1418
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 404
BsaXI ACNNNNNCTCC 5 cut(s) 27, 656, 686, 1235, 1265
Bsc4I CCNNNNNNNGG 4 cut(s) 605, 681, 732, 1376
Bse1I ACTGG 3 cut(s) 135, 610, 1500
Bse3DI GCAATG 3 cut(s) 947, 1017, 1388
BseBI CCWGG 4 cut(s) 162, 220, 1134, 1364
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 5 cut(s) 199, 320, 332, 595, 1490
BseLI CCNNNNNNNGG 4 cut(s) 605, 681, 732, 1376
BseMI GCAATG 3 cut(s) 947, 1017, 1388
BseMII CTCAG 3 cut(s) 668, 1131, 1556
BseNI ACTGG 3 cut(s) 135, 610, 1500
BseRI GAGGAG 1 cut(s) 1072
BseSI GKGCMC 2 cut(s) 1063, 1080
BseXI GCAGC 6 cut(s) 91, 189, 370, 1108, 1535, 1538
BsgI GTGCAG 1 cut(s) 1107
BshNI GGYRCC 2 cut(s) 1075, 1366
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 3 cut(s) 286, 1491, 1506
BslI CCNNNNNNNGG 4 cut(s) 605, 681, 732, 1376
BsmAI GTCTC 1 cut(s) 691
BsmFI GGGAC 3 cut(s) 286, 1491, 1506
BsmI GAATGC 5 cut(s) 299, 832, 851, 1176, 1325
Bso31I GGTCTC 1 cut(s) 691
Bsp1286I GDGCHC 2 cut(s) 1063, 1080
Bsp143I GATC 4 cut(s) 489, 633, 1425, 1549
Bsp1720I GCTNAGC 1 cut(s) 1117
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 3 cut(s) 78, 306, 1337
BspCNI CTCAG 3 cut(s) 667, 1130, 1555
BspHI TCATGA 1 cut(s) 630
BspLI GGNNCC 4 cut(s) 63, 377, 1077, 1368
BspPI GGATC 1 cut(s) 1433
BspT107I GGYRCC 2 cut(s) 1075, 1366
BspTI CTTAAG 1 cut(s) 1198
BspTNI GGTCTC 1 cut(s) 691
BsrBI CCGCTC 1 cut(s) 308
BsrDI GCAATG 3 cut(s) 947, 1017, 1388
BsrI ACTGG 3 cut(s) 135, 610, 1500
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 4 cut(s) 489, 633, 1425, 1549
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 4 cut(s) 162, 220, 1134, 1364
Bst4CI ACNGT 2 cut(s) 99, 565
BstAFI CTTAAG 1 cut(s) 1198
BstC8I GCNNGC 1 cut(s) 1031
BstDEI CTNAG 3 cut(s) 654, 1117, 1542
BstDSI CCRYGG 1 cut(s) 81
BstEII GGTNACC 1 cut(s) 1339
BstF5I GGATG 5 cut(s) 199, 320, 332, 595, 1490
BstKTI GATC 4 cut(s) 492, 636, 1428, 1552
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 4 cut(s) 489, 633, 1425, 1549
BstMWI GCNNNNNNNGC 4 cut(s) 305, 443, 958, 1019
BstNI CCWGG 4 cut(s) 162, 220, 1134, 1364
BstPI GGTNACC 1 cut(s) 1339
BstSCI CCNGG 4 cut(s) 160, 218, 1132, 1362
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 2 cut(s) 1063, 1080
BstV1I GCAGC 6 cut(s) 91, 189, 370, 1108, 1535, 1538
BstX2I RGATCY 1 cut(s) 1549
BstYI RGATCY 1 cut(s) 1549
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 5 cut(s) 199, 320, 332, 595, 1490
BtsI GCAGTG 1 cut(s) 1192
BtsIMutI CAGTG 2 cut(s) 142, 1192
Cac8I GCNNGC 1 cut(s) 1031
CaiI CAGNNNCTG 1 cut(s) 889
CciI TCATGA 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 895
Csp6I GTAC 6 cut(s) 87, 153, 231, 383, 609, 1252
CviQI GTAC 6 cut(s) 87, 153, 231, 383, 609, 1252
DdeI CTNAG 3 cut(s) 654, 1117, 1542
DpnI GATC 4 cut(s) 491, 635, 1427, 1551
DpnII GATC 4 cut(s) 489, 633, 1425, 1549
Eco130I CCWWGG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 1 cut(s) 61
Eco91I GGTNACC 1 cut(s) 1339
EcoO65I GGTNACC 1 cut(s) 1339
EcoRII CCWGG 4 cut(s) 160, 218, 1132, 1362
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 909
ErhI CCWWGG 1 cut(s) 81
FaqI GGGAC 3 cut(s) 286, 1491, 1506
FauNDI CATATG 1 cut(s) 1025
FbaI TGATCA 1 cut(s) 633
Fnu4HI GCNGC 7 cut(s) 105, 203, 306, 359, 1122, 1524, 1527
FokI GGATG 5 cut(s) 206, 327, 339, 582, 1497
Fsp4HI GCNGC 7 cut(s) 105, 203, 306, 359, 1122, 1524, 1527
FspBI CTAG 6 cut(s) 344, 461, 473, 1040, 1112, 1576
GluI GCNGC 7 cut(s) 105, 203, 306, 359, 1122, 1524, 1527
HapII CCGG 1 cut(s) 405
HgaI GACGC 1 cut(s) 895
HinfI GANTC 4 cut(s) 215, 274, 395, 794
HpaII CCGG 1 cut(s) 405
HphI GGTGA 3 cut(s) 188, 1009, 1351
Hpy166II GTNNAC 2 cut(s) 179, 1254
Hpy188I TCNGA 4 cut(s) 400, 857, 958, 1545
Hpy188III TCNNGA 5 cut(s) 264, 484, 631, 875, 1435
Hpy8I GTNNAC 2 cut(s) 179, 1254
HpyAV CCTTC 2 cut(s) 75, 457
HpyCH4III ACNGT 2 cut(s) 99, 565
HpyCH4IV ACGT 4 cut(s) 245, 867, 924, 1473
HpyF10VI GCNNNNNNNGC 4 cut(s) 305, 443, 958, 1019
HpyF3I CTNAG 3 cut(s) 654, 1117, 1542
HpySE526I ACGT 4 cut(s) 245, 867, 924, 1473
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 4 cut(s) 489, 633, 1425, 1549
LmnI GCTCC 2 cut(s) 381, 547
Lsp1109I GCAGC 6 cut(s) 91, 189, 370, 1108, 1535, 1538
LweI GCATC 4 cut(s) 184, 916, 927, 1475
MaeI CTAG 6 cut(s) 344, 461, 473, 1040, 1112, 1576
MaeII ACGT 4 cut(s) 245, 867, 924, 1473
MaeIII GTNAC 6 cut(s) 241, 339, 569, 819, 860, 1339
MalI GATC 4 cut(s) 491, 635, 1427, 1551
MbiI CCGCTC 1 cut(s) 308
MboI GATC 4 cut(s) 489, 633, 1425, 1549
MboII GAAGA 5 cut(s) 158, 547, 1276, 1345, 1558
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 1549
MhlI GDGCHC 2 cut(s) 1063, 1080
MluCI AATT 7 cut(s) 126, 267, 711, 972, 1374, 1534, 1561
MlyI GAGTC 2 cut(s) 268, 803
MmeI TCCRAC 2 cut(s) 454, 541
Mph1103I ATGCAT 1 cut(s) 909
MseI TTAA 4 cut(s) 72, 1199, 1457, 1470
MslI CAYNNNNRTG 4 cut(s) 80, 119, 325, 635
MspA1I CMGCKG 1 cut(s) 1121
MspCI CTTAAG 1 cut(s) 1198
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 4 cut(s) 162, 220, 1134, 1364
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 5 cut(s) 299, 832, 851, 1176, 1325
MvaI CCWGG 4 cut(s) 162, 220, 1134, 1364
MwoI GCNNNNNNNGC 4 cut(s) 305, 443, 958, 1019
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 1025
NdeII GATC 4 cut(s) 489, 633, 1425, 1549
NlaIV GGNNCC 4 cut(s) 63, 377, 1077, 1368
NmuCI GTSAC 3 cut(s) 241, 860, 1339
NsiI ATGCAT 1 cut(s) 909
PagI TCATGA 1 cut(s) 630
PctI GAATGC 5 cut(s) 299, 832, 851, 1176, 1325
PfeI GAWTC 2 cut(s) 215, 395
PflMI CCANNNNNTGG 3 cut(s) 605, 681, 732
PfoI TCCNGGA 2 cut(s) 160, 218
PkrI GCNGC 7 cut(s) 106, 204, 307, 360, 1123, 1525, 1528
PleI GAGTC 2 cut(s) 268, 802
PpsI GAGTC 2 cut(s) 268, 802
Psp1406I AACGTT 1 cut(s) 924
Psp6I CCWGG 4 cut(s) 160, 218, 1132, 1362
PspEI GGTNACC 1 cut(s) 1339
PspGI CCWGG 4 cut(s) 160, 218, 1132, 1362
PspN4I GGNNCC 4 cut(s) 63, 377, 1077, 1368
PspPI GGNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 889
PsuI RGATCY 1 cut(s) 1549
PvuII CAGCTG 1 cut(s) 1121
RsaI GTAC 6 cut(s) 88, 154, 232, 384, 610, 1253
RsaNI GTAC 6 cut(s) 87, 153, 231, 383, 609, 1252
RseI CAYNNNNRTG 4 cut(s) 80, 119, 325, 635
SaqAI TTAA 4 cut(s) 72, 1199, 1457, 1470
SatI GCNGC 7 cut(s) 105, 203, 306, 359, 1122, 1524, 1527
Sau3AI GATC 4 cut(s) 489, 633, 1425, 1549
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 268, 803
ScrFI CCNGG 4 cut(s) 162, 220, 1134, 1364
SduI GDGCHC 2 cut(s) 1063, 1080
SfaNI GCATC 4 cut(s) 184, 916, 927, 1475
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 4 cut(s) 80, 119, 325, 635
SmlI CTYRAG 4 cut(s) 276, 1150, 1198, 1433
SmoI CTYRAG 4 cut(s) 276, 1150, 1198, 1433
Sse9I AATT 7 cut(s) 126, 267, 711, 972, 1374, 1534, 1561
SsiI CCGC 3 cut(s) 78, 306, 1337
SspMI CTAG 6 cut(s) 344, 461, 473, 1040, 1112, 1576
StyD4I CCNGG 4 cut(s) 160, 218, 1132, 1362
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 99, 565
TaiI ACGT 4 cut(s) 248, 870, 927, 1476
TaqI TCGA 2 cut(s) 183, 1291
TaqII GACCGA 1 cut(s) 440
TasI AATT 7 cut(s) 126, 267, 711, 972, 1374, 1534, 1561
TatI WGTACW 2 cut(s) 382, 1251
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 2 cut(s) 215, 395
Tru1I TTAA 4 cut(s) 72, 1199, 1457, 1470
Tru9I TTAA 4 cut(s) 72, 1199, 1457, 1470
TscAI CASTG 2 cut(s) 142, 1199
TseFI GTSAC 3 cut(s) 241, 860, 1339
TseI GCWGC 6 cut(s) 104, 202, 358, 1121, 1523, 1526
Tsp45I GTSAC 3 cut(s) 241, 860, 1339
TspDTI ATGAA 5 cut(s) 239, 619, 965, 1262, 1408
TspGWI ACGGA 4 cut(s) 229, 1292, 1338, 1401
TspRI CASTG 2 cut(s) 142, 1199
Van91I CCANNNNNTGG 3 cut(s) 605, 681, 732
Vha464I CTTAAG 1 cut(s) 1198
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 1534
XspI CTAG 6 cut(s) 344, 461, 473, 1040, 1112, 1576
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.