Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

14943161 .. 14944300

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTGTGTAGAAAAGGGACATTGCCATTTGTAATTAGATTAGATGGTTTGTTAGGAAGTCTGTTAGAGGCATGGGGAATTATATGCTTGTCACTAGCATTCGCATGGCAACTGTACACCGCATGGCTTCTTGTACATCTACACGAATCGGACACCGGAATTCGGTACAGTAGATACCTCCACCTCGCTATAACAGCCTTCGGTCCAAAGTTGGGGAAACTGCTCACTATATTCCCAGTAATGTACCTATCAGGGGGTACATGTGCCCAGCTGATCATCATAGGAGGTGGAACCATGAAGCTTTTCTTAAAAGCTGTTTGTGATGTTAACTCAGTGACTGGCACAGAGTGTTTCTTGTTGTTCGTATGCATGGCCATTGTTGTGGCTCAGTTTCCCAACTTGAACTCCATAGGTTGGGTCTCACTGATTGGTGCCACCACTGCGATTGCCTACTGTACCCTGATTTGGGGCCTTTCAATCGCCAATGGCAGGCCTAGTGGCATTTCATACAACCCACCGGAGATGGAGTCAAACATGGATAGATTTGGTGGTGTCATAATGTTATCCTTGAGATTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

194

Amino Acids

21.09

Weight (kDa)

8.73

Isoelectric Point (pI)

24.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	414
AciI	CCGC	1 cut(s)	120
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	348
AfaI	GTAC	6 cut(s)	116, 135, 167, 245, 259, 457
AfiI	CCNNNNNNNGG	7 cut(s)	162, 212, 253, 414, 465, 466, 489
AflIII	ACRYGT	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	403, 477
AluBI	AGCT	3 cut(s)	271, 301, 314
AluI	AGCT	3 cut(s)	271, 301, 314
Alw26I	GTCTC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	3 cut(s)	372, 469, 491
ApoI	RAATTY	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	203, 469
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	431
BccI	CCATC	2 cut(s)	38, 517
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	2 cut(s)	95, 495
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	203, 469
BmiI	GGNNCC	3 cut(s)	292, 433, 470
BmrI	ACTGGG	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	424
BsaWI	WCCGGW	2 cut(s)	155, 517
BsaXI	ACNNNNNCTCC	4 cut(s)	389, 419, 512, 542
Bsc4I	CCNNNNNNNGG	7 cut(s)	162, 212, 253, 414, 465, 466, 489
Bse1I	ACTGG	2 cut(s)	236, 343
Bse3DI	GCAATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	7 cut(s)	162, 212, 253, 414, 465, 466, 489
BseMI	GCAATG	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	345, 401
BseNI	ACTGG	2 cut(s)	236, 343
BseSI	GKGCMC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	267
BshFI	GGCC	3 cut(s)	374, 471, 493
BshNI	GGYRCC	1 cut(s)	431
BsiSI	CCGG	2 cut(s)	156, 518
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	7 cut(s)	162, 212, 253, 414, 465, 466, 489
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	374, 471, 493
Bso31I	GGTCTC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp1407I	TGTACA	2 cut(s)	114, 133
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	3 cut(s)	374, 471, 493
BspCNI	CTCAG	2 cut(s)	344, 400
BspLI	GGNNCC	3 cut(s)	292, 433, 470
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	20
BsrGI	TGTACA	2 cut(s)	114, 133
BsrI	ACTGG	2 cut(s)	236, 343
BssMI	GATC	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	114, 170, 455
BstAUI	TGTACA	2 cut(s)	114, 133
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	331, 387
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 440
BstNSI	RCATGY	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	374, 471, 493
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	3 cut(s)	339, 422, 438
Cac8I	GCNNGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	203, 469
Csp6I	GTAC	6 cut(s)	115, 134, 166, 244, 258, 456
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	7 cut(s)	72, 105, 123, 261, 295, 370, 535
CviJI	RGCY	9 cut(s)	127, 197, 271, 301, 314, 374, 386, 471, 493
CviKI_1	RGCY	9 cut(s)	127, 197, 271, 301, 314, 374, 386, 471, 493
CviQI	GTAC	6 cut(s)	115, 134, 166, 244, 258, 456
DdeI	CTNAG	2 cut(s)	331, 387
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
DraIII	CACNNNGTG	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	372
Eco147I	AGGCCT	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRI	GAATTC	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	371
FaeI	CATG	7 cut(s)	75, 108, 126, 264, 298, 373, 538
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	7 cut(s)	71, 104, 122, 260, 294, 369, 534
FbaI	TGATCA	1 cut(s)	273
FspBI	CTAG	2 cut(s)	95, 495
GsaI	CCCAGC	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	374, 471, 493
HapII	CCGG	2 cut(s)	156, 518
Hin1II	CATG	7 cut(s)	75, 108, 126, 264, 298, 373, 538
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	146, 527, 573
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	156, 518
Hpy166II	GTNNAC	2 cut(s)	117, 328
Hpy188I	TCNGA	1 cut(s)	151
Hpy8I	GTNNAC	2 cut(s)	117, 328
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	3 cut(s)	114, 170, 455
HpyCH4V	TGCA	1 cut(s)	369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 440
HpyF3I	CTNAG	2 cut(s)	331, 387
Hsp92II	CATG	7 cut(s)	75, 108, 126, 264, 298, 373, 538
Ksp22I	TGATCA	1 cut(s)	273
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	9 cut(s)	169, 237, 249, 281, 324, 473, 475, 531, 562
MaeI	CTAG	2 cut(s)	95, 495
MaeIII	GTNAC	2 cut(s)	90, 334
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	3 cut(s)	33, 78, 159
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	536
MnlI	CCTC	4 cut(s)	61, 188, 194, 278
Mox20I	TGGCCA	1 cut(s)	374
Mph1103I	ATGCAT	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	308, 327
MslI	CAYNNNNRTG	2 cut(s)	103, 380
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	2 cut(s)	156, 518
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	194, 440
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	7 cut(s)	75, 108, 126, 264, 298, 373, 538
NlaIV	GGNNCC	3 cut(s)	292, 433, 470
NmuCI	GTSAC	2 cut(s)	90, 334
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	493
PciI	ACATGT	1 cut(s)	260
PctI	GAATGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	146, 573
PflMI	CCANNNNNTGG	1 cut(s)	414
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PscI	ACATGT	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	292, 433, 470
PspPI	GGNCC	2 cut(s)	203, 469
PstNI	CAGNNNCTG	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	6 cut(s)	116, 135, 167, 245, 259, 457
RsaNI	GTAC	6 cut(s)	115, 134, 166, 244, 258, 456
RseI	CAYNNNNRTG	2 cut(s)	103, 380
SaqAI	TTAA	2 cut(s)	308, 327
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	2 cut(s)	203, 469
SchI	GAGTC	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	9 cut(s)	180, 186, 249, 273, 289, 303, 316, 415, 581
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	103, 380
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	3 cut(s)	33, 78, 159
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	2 cut(s)	95, 495
StuI	AGGCCT	1 cut(s)	493
TaaI	ACNGT	3 cut(s)	114, 170, 455
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	33, 78, 159
TatI	WGTACW	2 cut(s)	114, 133
TfiI	GAWTC	2 cut(s)	146, 573
Tru1I	TTAA	2 cut(s)	308, 327
Tru9I	TTAA	2 cut(s)	308, 327
TscAI	CASTG	3 cut(s)	339, 429, 445
TseFI	GTSAC	2 cut(s)	90, 334
Tsp45I	GTSAC	2 cut(s)	90, 334
TspDTI	ATGAA	2 cut(s)	311, 495
TspRI	CASTG	3 cut(s)	339, 429, 445
Van91I	CCANNNNNTGG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	2 cut(s)	95, 495
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.