Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

40888406 .. 40891399

Gene Structure 2994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGGGAGAAGTGGTTATTGAAACAAACTACATGGGAGATTTACATTTAGCACAAGCTATGGACCCTTCCTTTAACACCGCCATGGGTACAAGCTCACGGTCTGCTGCTCTAGTCATTCCCATGACAATTAGTTCCAGTGCAAACGAAGATGGTACAAATCCAGGAGGCGTAGGTGGTGAACTCGATAAGCAGGATGCTTGGCTGCCTCTCACAGAATCCAGGAATGGCAGTACCTATTCCGTGACGTTTCATCTAGTTTGTTCAGGAATTGGGACTCAAGCTCTTTCACTCCCTGTTGCATTCGCCGCTCTTGGATGGGCATGGGGATGTATATGCTTGTTACTAGCGTTTGCATGGCAGCTCTACACTATACGGCTCCTTGTACTATCCCACGAATCTGATACCGGAACTCGTTATAGTAGATACCTCCAACTTGCTATTAGAGCCTTCGGTCAAAAGCTGGGGAAGTTGCTAGTAATGTTCCCGATGATCTATCTATCAAATGGTGCTTGTGTCCAACTTATTATCGCAGGAGGTCTAACAATGGAGCTTTTCTTCAAAACCGTGTGTAACGATGGGGCTACTACTTATTGTCATCCAATGACTGGTACAGAGTGCTTCTTGGTGTTCATGATCATGGCTATTATTGTGGCTCAGTTTCCCAACTTGAACTCCATAGCTTGGGTCTCTTTGATTGGTTCTATCACAGCAATTGTATATTGCACCATCATCTGGTCTATTTCAGTTGGCAAGGGCAGACCTAATGGTATATCATACAATCCACCAGAAATGGAGTCTAATATGGATAGATTTGGTCGGATACTGAATGCAATTGGGATTGTGTTTTTGGCATTCAGAGGTCACAACGTCATTCTTGAAATACAGGGAACATTGCCATCAGAGCCAAAACACCCAATTCATAAGCGAATGTGGAGAGGGGTGATTATATCGTATGCTATCATTGCCATATGCTTGCTTCCTCTAGCCATAGCTGGATTTTGGGCACATGGAAACAAGGTGCCCTCCTCATCAGTTTTATCAATATCTGCAATACTAGGCTCAGCTGCACAACTACCTGGACACAATAACAACTCAAGGTATGTTCTGGGAGTAATCTGCATTCTTGTAATAATACACTGCTTAAGCACATTTCAAATCTATGGCATGGTAGCCTTTGACAACTTGGAGATGAAGTACACTATGAGGAAGAACAAGCCGTGTCCAAGATGGCTTCGAGTAGCTTTCCGTTTTTTGTTTGGAGGATTGGCATTCTTTATAGCGGTGACCTTTCCGTTCTTCGTAAGCCTGGCACCTCTAATTGGAGGTTTGACATTGCCTATGGCTTATGCTTATCCATGTTTCATGTGGATCACACTCAAGAAACCGAAGCCGAAAGGTTTAATGTGGTGTATTAACGTGGGACTTGGATGCTTGGGACTGGTTTTGAGTGTTGTTTTAGTGGTTGCAGCAGCATGGAATTTAGCTCAGAAAGGTCTAAATGCCAATTTCTTCAAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

506

Amino Acids

55.18

Weight (kDa)

9.04

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	75 - 489	1.4e-54	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1018, 1309
AccB7I	CCANNNNNTGG	3 cut(s)	605, 681, 732
AccBSI	CCGCTC	1 cut(s)	308
AciI	CCGC	3 cut(s)	78, 306, 1280
AclWI	GGATC	1 cut(s)	1376
AcsI	RAATTY	1 cut(s)	1477
AfaI	GTAC	6 cut(s)	88, 154, 232, 384, 610, 1196
AfiI	CCNNNNNNNGG	4 cut(s)	605, 681, 732, 1319
AflII	CTTAAG	1 cut(s)	1141
AgsI	TTSAA	6 cut(s)	20, 559, 670, 878, 1154, 1513
AjnI	CCWGG	4 cut(s)	160, 218, 1075, 1305
Alw26I	GTCTC	1 cut(s)	691
AlwI	GGATC	1 cut(s)	1376
ApeKI	GCWGC	6 cut(s)	104, 202, 358, 1064, 1466, 1469
ApoI	RAATTY	1 cut(s)	1477
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	188, 952, 1294
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	2 cut(s)	1006, 1023
BanI	GGYRCC	2 cut(s)	1018, 1309
BbvI	GCAGC	6 cut(s)	91, 189, 370, 1051, 1478, 1481
BccI	CCATC	6 cut(s)	143, 309, 569, 734, 904, 1221
BceAI	ACGGC	2 cut(s)	389, 1201
BciT130I	CCWGG	4 cut(s)	162, 220, 1077, 1307
BciVI	GTATCC	1 cut(s)	813
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	691
BfaI	CTAG	7 cut(s)	110, 254, 344, 473, 983, 1055, 1519
BfrI	CTTAAG	1 cut(s)	1141
BfuI	GTATCC	1 cut(s)	813
BisI	GCNGC	7 cut(s)	105, 203, 306, 359, 1065, 1467, 1470
BlpI	GCTNAGC	1 cut(s)	1060
BlsI	GCNGC	7 cut(s)	106, 204, 307, 360, 1066, 1468, 1471
Bme1390I	CCNGG	4 cut(s)	162, 220, 1077, 1307
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	4 cut(s)	63, 377, 1020, 1311
BmrFI	CCNGG	4 cut(s)	162, 220, 1077, 1307
BmsI	GCATC	2 cut(s)	184, 1418
Bpu1102I	GCTNAGC	1 cut(s)	1060
BpuEI	CTTGAG	3 cut(s)	261, 1078, 1361
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	404
BsaXI	ACNNNNNCTCC	5 cut(s)	27, 656, 686, 1178, 1208
Bsc4I	CCNNNNNNNGG	4 cut(s)	605, 681, 732, 1319
Bse1I	ACTGG	3 cut(s)	135, 610, 1443
Bse3DI	GCAATG	3 cut(s)	890, 960, 1331
BseBI	CCWGG	4 cut(s)	162, 220, 1077, 1307
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	5 cut(s)	199, 320, 332, 595, 1433
BseLI	CCNNNNNNNGG	4 cut(s)	605, 681, 732, 1319
BseMI	GCAATG	3 cut(s)	890, 960, 1331
BseMII	CTCAG	3 cut(s)	668, 1074, 1499
BseNI	ACTGG	3 cut(s)	135, 610, 1443
BseRI	GAGGAG	1 cut(s)	1015
BseSI	GKGCMC	2 cut(s)	1006, 1023
BseXI	GCAGC	6 cut(s)	91, 189, 370, 1051, 1478, 1481
BseYI	CCCAGC	1 cut(s)	460
BsgI	GTGCAG	1 cut(s)	1050
BshNI	GGYRCC	2 cut(s)	1018, 1309
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	3 cut(s)	286, 1434, 1449
BslI	CCNNNNNNNGG	4 cut(s)	605, 681, 732, 1319
BsmAI	GTCTC	1 cut(s)	691
BsmFI	GGGAC	3 cut(s)	286, 1434, 1449
BsmI	GAATGC	5 cut(s)	299, 832, 851, 1119, 1268
Bso31I	GGTCTC	1 cut(s)	691
Bsp1286I	GDGCHC	2 cut(s)	1006, 1023
Bsp143I	GATC	3 cut(s)	489, 633, 1368
Bsp1720I	GCTNAGC	1 cut(s)	1060
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	3 cut(s)	78, 306, 1280
BspCNI	CTCAG	3 cut(s)	667, 1073, 1498
BspHI	TCATGA	1 cut(s)	630
BspLI	GGNNCC	4 cut(s)	63, 377, 1020, 1311
BspPI	GGATC	1 cut(s)	1376
BspT107I	GGYRCC	2 cut(s)	1018, 1309
BspTI	CTTAAG	1 cut(s)	1141
BspTNI	GGTCTC	1 cut(s)	691
BsrBI	CCGCTC	1 cut(s)	308
BsrDI	GCAATG	3 cut(s)	890, 960, 1331
BsrI	ACTGG	3 cut(s)	135, 610, 1443
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	3 cut(s)	489, 633, 1368
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	4 cut(s)	162, 220, 1077, 1307
Bst4CI	ACNGT	2 cut(s)	99, 565
BstAFI	CTTAAG	1 cut(s)	1141
BstC8I	GCNNGC	1 cut(s)	974
BstDEI	CTNAG	3 cut(s)	654, 1060, 1485
BstDSI	CCRYGG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	1282
BstF5I	GGATG	5 cut(s)	199, 320, 332, 595, 1433
BstKTI	GATC	3 cut(s)	492, 636, 1371
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	3 cut(s)	489, 633, 1368
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 443, 901, 962
BstNI	CCWGG	4 cut(s)	162, 220, 1077, 1307
BstPI	GGTNACC	1 cut(s)	1282
BstSCI	CCNGG	4 cut(s)	160, 218, 1075, 1305
BstSLI	GKGCMC	2 cut(s)	1006, 1023
BstV1I	GCAGC	6 cut(s)	91, 189, 370, 1051, 1478, 1481
BsuI	GTATCC	1 cut(s)	813
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	5 cut(s)	199, 320, 332, 595, 1433
BtsI	GCAGTG	1 cut(s)	1135
BtsIMutI	CAGTG	2 cut(s)	142, 1135
Cac8I	GCNNGC	1 cut(s)	974
CciI	TCATGA	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	6 cut(s)	87, 153, 231, 383, 609, 1195
CviQI	GTAC	6 cut(s)	87, 153, 231, 383, 609, 1195
DdeI	CTNAG	3 cut(s)	654, 1060, 1485
DpnI	GATC	3 cut(s)	491, 635, 1370
DpnII	GATC	3 cut(s)	489, 633, 1368
Eco130I	CCWWGG	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	1282
EcoO65I	GGTNACC	1 cut(s)	1282
EcoRII	CCWGG	4 cut(s)	160, 218, 1075, 1305
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaqI	GGGAC	3 cut(s)	286, 1434, 1449
FauNDI	CATATG	1 cut(s)	968
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	7 cut(s)	105, 203, 306, 359, 1065, 1467, 1470
FokI	GGATG	5 cut(s)	206, 327, 339, 582, 1440
Fsp4HI	GCNGC	7 cut(s)	105, 203, 306, 359, 1065, 1467, 1470
FspBI	CTAG	7 cut(s)	110, 254, 344, 473, 983, 1055, 1519
GluI	GCNGC	7 cut(s)	105, 203, 306, 359, 1065, 1467, 1470
GsaI	CCCAGC	1 cut(s)	464
HapII	CCGG	1 cut(s)	405
HinfI	GANTC	4 cut(s)	215, 274, 395, 794
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	3 cut(s)	188, 952, 1294
Hpy166II	GTNNAC	2 cut(s)	179, 1197
Hpy188I	TCNGA	5 cut(s)	400, 819, 857, 901, 1488
Hpy188III	TCNNGA	5 cut(s)	264, 484, 631, 875, 1378
Hpy8I	GTNNAC	2 cut(s)	179, 1197
HpyAV	CCTTC	2 cut(s)	75, 457
HpyCH4III	ACNGT	2 cut(s)	99, 565
HpyCH4IV	ACGT	3 cut(s)	245, 867, 1416
HpyCH4V	TGCA	9 cut(s)	140, 299, 353, 723, 830, 1049, 1067, 1119, 1466
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 443, 901, 962
HpyF3I	CTNAG	3 cut(s)	654, 1060, 1485
HpySE526I	ACGT	3 cut(s)	245, 867, 1416
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	3 cut(s)	489, 633, 1368
LmnI	GCTCC	2 cut(s)	381, 547
Lsp1109I	GCAGC	6 cut(s)	91, 189, 370, 1051, 1478, 1481
LweI	GCATC	2 cut(s)	184, 1418
MaeI	CTAG	7 cut(s)	110, 254, 344, 473, 983, 1055, 1519
MaeII	ACGT	3 cut(s)	245, 867, 1416
MaeIII	GTNAC	5 cut(s)	241, 339, 569, 860, 1282
MalI	GATC	3 cut(s)	491, 635, 1370
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	3 cut(s)	489, 633, 1368
MboII	GAAGA	5 cut(s)	158, 547, 1219, 1288, 1501
MfeI	CAATTG	2 cut(s)	711, 831
MhlI	GDGCHC	2 cut(s)	1006, 1023
MluCI	AATT	8 cut(s)	126, 267, 711, 831, 915, 1317, 1477, 1504
MlyI	GAGTC	2 cut(s)	268, 803
MmeI	TCCRAC	3 cut(s)	454, 541, 797
MseI	TTAA	4 cut(s)	72, 1142, 1400, 1413
MslI	CAYNNNNRTG	4 cut(s)	80, 119, 325, 635
MspA1I	CMGCKG	1 cut(s)	1064
MspCI	CTTAAG	1 cut(s)	1141
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	4 cut(s)	162, 220, 1077, 1307
MunI	CAATTG	2 cut(s)	711, 831
Mva1269I	GAATGC	5 cut(s)	299, 832, 851, 1119, 1268
MvaI	CCWGG	4 cut(s)	162, 220, 1077, 1307
MwoI	GCNNNNNNNGC	4 cut(s)	305, 443, 901, 962
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	968
NdeII	GATC	3 cut(s)	489, 633, 1368
NlaIV	GGNNCC	4 cut(s)	63, 377, 1020, 1311
NmuCI	GTSAC	3 cut(s)	241, 860, 1282
PagI	TCATGA	1 cut(s)	630
PctI	GAATGC	5 cut(s)	299, 832, 851, 1119, 1268
PfeI	GAWTC	2 cut(s)	215, 395
PflMI	CCANNNNNTGG	3 cut(s)	605, 681, 732
PfoI	TCCNGGA	2 cut(s)	160, 218
PkrI	GCNGC	7 cut(s)	106, 204, 307, 360, 1066, 1468, 1471
PleI	GAGTC	2 cut(s)	268, 802
PpsI	GAGTC	2 cut(s)	268, 802
Psp6I	CCWGG	4 cut(s)	160, 218, 1075, 1305
PspEI	GGTNACC	1 cut(s)	1282
PspFI	CCCAGC	1 cut(s)	460
PspGI	CCWGG	4 cut(s)	160, 218, 1075, 1305
PspN4I	GGNNCC	4 cut(s)	63, 377, 1020, 1311
PspPI	GGNCC	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	1064
RsaI	GTAC	6 cut(s)	88, 154, 232, 384, 610, 1196
RsaNI	GTAC	6 cut(s)	87, 153, 231, 383, 609, 1195
RseI	CAYNNNNRTG	4 cut(s)	80, 119, 325, 635
SaqAI	TTAA	4 cut(s)	72, 1142, 1400, 1413
SatI	GCNGC	7 cut(s)	105, 203, 306, 359, 1065, 1467, 1470
Sau3AI	GATC	3 cut(s)	489, 633, 1368
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	268, 803
ScrFI	CCNGG	4 cut(s)	162, 220, 1077, 1307
SduI	GDGCHC	2 cut(s)	1006, 1023
SfaNI	GCATC	2 cut(s)	184, 1418
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	4 cut(s)	80, 119, 325, 635
SmlI	CTYRAG	4 cut(s)	276, 1093, 1141, 1376
SmoI	CTYRAG	4 cut(s)	276, 1093, 1141, 1376
Sse9I	AATT	8 cut(s)	126, 267, 711, 831, 915, 1317, 1477, 1504
SsiI	CCGC	3 cut(s)	78, 306, 1280
SspMI	CTAG	7 cut(s)	110, 254, 344, 473, 983, 1055, 1519
StyD4I	CCNGG	4 cut(s)	160, 218, 1075, 1305
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	99, 565
TaiI	ACGT	3 cut(s)	248, 870, 1419
TaqI	TCGA	2 cut(s)	183, 1234
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	8 cut(s)	126, 267, 711, 831, 915, 1317, 1477, 1504
TatI	WGTACW	2 cut(s)	382, 1194
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	215, 395
Tru1I	TTAA	4 cut(s)	72, 1142, 1400, 1413
Tru9I	TTAA	4 cut(s)	72, 1142, 1400, 1413
TscAI	CASTG	2 cut(s)	142, 1142
TseFI	GTSAC	3 cut(s)	241, 860, 1282
TseI	GCWGC	6 cut(s)	104, 202, 358, 1064, 1466, 1469
Tsp45I	GTSAC	3 cut(s)	241, 860, 1282
TspDTI	ATGAA	5 cut(s)	239, 619, 908, 1205, 1351
TspGWI	ACGGA	3 cut(s)	229, 1235, 1281
TspRI	CASTG	2 cut(s)	142, 1142
Van91I	CCANNNNNTGG	3 cut(s)	605, 681, 732
Vha464I	CTTAAG	1 cut(s)	1141
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	1477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1362
XspI	CTAG	7 cut(s)	110, 254, 344, 473, 983, 1055, 1519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.