Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Forward (+)

17706128 .. 17707554

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0127300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAAGATGACGAGGCTGACCCATTATATCTTCCCAAGTGGTGTGGCGACATGGTTAATGAGCTGAAGTTGTCCAATCTTCACCGCTTGCAGACACTAGTGAACTTCCCTGCAAACAAATGTGATGTAAAAGATCTTCTGAAATTGACTAAACTGAGGAAACTGGTGCTCAATGACCCAGCACATTTCAAAAGTTTAGTAGAAATTTTCAGTCCCCCAAATGATGTCACATTAAGAAGCCTTCAGTCCATGTCCTTTAAAAGTGACACACTTGCATTCCCCGATGAGGTAGTAGATGTCAGGCAACTGCTGTCAAGCTGTTCAGCTCTTCAGAAGTTTCATGTGGAAGGACGAATAGAAAAGCTACCAGAATACCTTCAGTTCCCTCCAAACATTGCCAAGTTAACTTTATGGGGTTCTGATCTTGTGGAAGATCCAATCCCAATATTGGAGAAGATGCCTAACTTGAGAATTCTGAGCGGATGGCAAATGTTCATGGGGAAGAAAATGGTCCTAAACTCAGAAGTCTACTGCTTCGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

181

Amino Acids

20.74

Weight (kDa)

5.64

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	23 - 171	2.1e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	480
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	2 cut(s)	85, 480
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	204, 471
AcuI	CTGAAG	4 cut(s)	86, 227, 314, 362
AfiI	CCNNNNNNNGG	2 cut(s)	286, 448
AgsI	TTSAA	1 cut(s)	190
AhlI	ACTAGT	1 cut(s)	97
AluBI	AGCT	4 cut(s)	64, 318, 326, 364
AluI	AGCT	4 cut(s)	64, 318, 326, 364
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	204, 471
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	511
BarI	GAAGNNNNNNTAC	2 cut(s)	120, 152
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	1 cut(s)	477
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmsI	GCATC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 448
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	488
BseLI	CCNNNNNNNGG	2 cut(s)	286, 448
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	3 cut(s)	146, 467, 534
BseNI	ACTGG	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	286, 448
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	133, 421, 433
BspACI	CCGC	2 cut(s)	85, 480
BspCNI	CTCAG	3 cut(s)	147, 468, 533
BspPI	GGATC	1 cut(s)	428
BspQI	GCTCTTC	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	133, 421, 433
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	155, 476, 520
BstF5I	GGATG	1 cut(s)	488
BstKTI	GATC	3 cut(s)	136, 424, 436
BstMBI	GATC	3 cut(s)	133, 421, 433
BstX2I	RGATCY	2 cut(s)	133, 433
BstYI	RGATCY	2 cut(s)	133, 433
BtsCI	GGATG	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	511
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	4 cut(s)	52, 250, 341, 496
CviJI	RGCY	7 cut(s)	17, 64, 240, 318, 326, 364, 542
CviKI_1	RGCY	7 cut(s)	17, 64, 240, 318, 326, 364, 542
DdeI	CTNAG	3 cut(s)	155, 476, 520
DpnI	GATC	3 cut(s)	135, 423, 435
DpnII	GATC	3 cut(s)	133, 421, 433
DraI	TTTAAA	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	511
Eco57I	CTGAAG	4 cut(s)	86, 227, 314, 362
EcoRI	GAATTC	1 cut(s)	471
FaeI	CATG	4 cut(s)	55, 253, 344, 499
FaiI	YATR	6 cut(s)	28, 53, 251, 342, 412, 497
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	4 cut(s)	51, 249, 340, 495
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	1 cut(s)	495
FspBI	CTAG	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	182
Hin1II	CATG	4 cut(s)	55, 253, 344, 499
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HpaI	GTTAAC	1 cut(s)	405
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	103, 405, 529
Hpy188I	TCNGA	5 cut(s)	141, 333, 421, 477, 523
Hpy8I	GTNNAC	3 cut(s)	103, 405, 529
HpyAV	CCTTC	3 cut(s)	251, 341, 386
HpyCH4V	TGCA	3 cut(s)	91, 113, 275
HpyF3I	CTNAG	3 cut(s)	155, 476, 520
Hsp92II	CATG	4 cut(s)	55, 253, 344, 499
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	133, 421, 433
LguI	GCTCTTC	1 cut(s)	333
LpnPI	CCDG	5 cut(s)	123, 149, 192, 286, 381
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	226, 263
MalI	GATC	3 cut(s)	135, 423, 435
MbiI	CCGCTC	1 cut(s)	480
MboI	GATC	3 cut(s)	133, 421, 433
MboII	GAAGA	8 cut(s)	17, 23, 71, 128, 320, 443, 466, 514
MflI	RGATCY	2 cut(s)	133, 433
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	3 cut(s)	143, 204, 471
MnlI	CCTC	4 cut(s)	7, 150, 280, 396
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	4 cut(s)	57, 233, 258, 404
Mva1269I	GAATGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	133, 421, 433
NlaIII	CATG	4 cut(s)	55, 253, 344, 499
NmuCI	GTSAC	2 cut(s)	226, 263
PciSI	GCTCTTC	1 cut(s)	333
PctI	GAATGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	133, 433
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	57, 233, 258, 404
Sau3AI	GATC	3 cut(s)	133, 421, 433
Sau96I	GGNCC	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	66, 291, 320, 328, 366, 378
SfaNI	GCATC	1 cut(s)	447
SinI	GGWCC	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	3 cut(s)	143, 204, 471
SsiI	CCGC	2 cut(s)	85, 480
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	1 cut(s)	98
TasI	AATT	3 cut(s)	143, 204, 471
Tru1I	TTAA	4 cut(s)	57, 233, 258, 404
Tru9I	TTAA	4 cut(s)	57, 233, 258, 404
TseFI	GTSAC	2 cut(s)	226, 263
Tsp45I	GTSAC	2 cut(s)	226, 263
TspDTI	ATGAA	2 cut(s)	329, 484
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	2 cut(s)	204, 471
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.