Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000079.1

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

320697 .. 322059

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000079.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgggagatcaagatgatgttgaaaaacattcaagccaaggttttgctcaagacttttcctgcatgaacaatagaggcccacaagctgcccaagtcataccagtcacagtgagtccccaaaacatagatagaacaacagacggggaagggggggagctcaatccacaagatgcttggttacccctcacagagtccagaaaagggaccacctattctgctacatttcatcttctgtcttcaggaattggaattcaagcccttttactacctgttgcttttgctactcttggatgccaagctatggtagttttgacagtttgtgagcttgagaagtattactttgatgtgggcgagggaaacatgcgtgtatcgattgtacgctctctagtggatgaagccaagcttccatttccaatcgaaaacgaaataatgacggttcgtgatgctattgggacttatgtggcttggcctaaaaaccttattgtttttccagtagagtttcaggtaacaaatactacttataacttgatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

177

Amino Acids

19.45

Weight (kDa)

4.49

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	522
AccB7I	CCANNNNNTGG	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	201, 301
AgsI	TTSAA	3 cut(s)	23, 33, 254
AluBI	AGCT	5 cut(s)	86, 157, 299, 325, 403
AluI	AGCT	5 cut(s)	86, 157, 299, 325, 403
Alw21I	GWGCWC	1 cut(s)	159
AoxI	GGCC	2 cut(s)	76, 467
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	77, 204
AvaII	GGWCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	77, 204
BmiI	GGNNCC	1 cut(s)	205
BmsI	GCATC	3 cut(s)	160, 281, 433
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	33, 347
Bsa29I	ATCGAT	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 301
Bse1I	ACTGG	2 cut(s)	101, 491
BseCI	ATCGAT	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	296, 397
BseLI	CCNNNNNNNGG	2 cut(s)	201, 301
BseNI	ACTGG	2 cut(s)	101, 491
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	2 cut(s)	78, 469
BshVI	ATCGAT	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	159
BslFI	GGGAC	3 cut(s)	99, 217, 466
BslI	CCNNNNNNNGG	2 cut(s)	201, 301
BsmFI	GGGAC	3 cut(s)	99, 217, 466
BsnI	GGCC	2 cut(s)	78, 469
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	2 cut(s)	78, 469
BspDI	ATCGAT	1 cut(s)	371
BspLI	GGNNCC	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	101, 491
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	3 cut(s)	109, 316, 436
BstEII	GGTNACC	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	296, 397
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstNSI	RCATGY	1 cut(s)	364
BstPI	GGTNACC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	371
BsuRI	GGCC	2 cut(s)	78, 469
BsuTUI	ATCGAT	1 cut(s)	371
BtsCI	GGATG	2 cut(s)	296, 397
BtsIMutI	CAGTG	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	77, 204
ClaI	ATCGAT	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	2 cut(s)	64, 361
CviQI	GTAC	1 cut(s)	377
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	222
Eco91I	GGTNACC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	177
EcoRI	GAATTC	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	67, 364
FaiI	YATR	7 cut(s)	65, 98, 125, 302, 362, 459, 522
FalI	AAGNNNNNCTT	4 cut(s)	323, 355, 387, 419
FaqI	GGGAC	3 cut(s)	99, 217, 466
FatI	CATG	2 cut(s)	63, 360
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	303, 404
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	78, 469
Hin1II	CATG	2 cut(s)	67, 364
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	112, 191
Hpy188III	TCNNGA	5 cut(s)	11, 50, 195, 240, 440
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	3 cut(s)	109, 316, 436
HpyCH4V	TGCA	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	67, 364
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	73, 114, 208, 225, 282, 488, 504
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	3 cut(s)	160, 281, 433
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	103, 177, 505
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	221, 228
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	243, 249
MlyI	GAGTC	2 cut(s)	121, 200
MnlI	CCTC	3 cut(s)	68, 194, 346
MseI	TTAA	1 cut(s)	532
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	67, 364
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	2 cut(s)	120, 199
PpsI	GAGTC	2 cut(s)	120, 199
PsiI	TTATAA	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	77, 204
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	532
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	2 cut(s)	77, 204
SchI	GAGTC	2 cut(s)	121, 200
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	3 cut(s)	160, 281, 433
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	48, 326
SmoI	CTYRAG	2 cut(s)	48, 326
Sse9I	AATT	2 cut(s)	243, 249
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	3 cut(s)	109, 316, 436
TaqI	TCGA	2 cut(s)	371, 417
TasI	AATT	2 cut(s)	243, 249
Tru1I	TTAA	1 cut(s)	532
Tru9I	TTAA	1 cut(s)	532
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	3 cut(s)	80, 215, 408
TspRI	CASTG	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.