RchiOBHm_Chr6g0279671

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
42756532 .. 42759669
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25080

Sequence Viewer

Length: 1521 bp
ATGGAAGAAGTGGCTGATGAAGCGAATCGGAGGCCAGTGGATAGGGTTCATTCGTTTAACAGCGCAAGTAGAGGGTCTGATTCTTCACACGTCATTCCCATCACAAGTGCTACTGCTAGTCCCACAAGTAATCATTTGGATGCTGATTACGACATCAATAATGTTACGTCTGCAAATTGGGGGGAAGATGGTGAGCTCAATCCGCAGGACGCTTGGCTACCTCTCACCGAGTCGAGGAAAGGCAATGCTTTCTCTGCTAGCTTTCATTTACAATGTTCGGGAATCGGAGTCCAAGCCCTTTTGCTTCCTGTTGCATTTGCCACTCTTGGATGGTCATGGGGAACTGTATGCTTGTCACTTGCATTCACATGGCAGCTCTACACCATATGGCTTCTAGTACACCTACACGAATCAGACTCTGGAATTCGTTACAGTAGATACCTCGACCTAGCAATGACAGCTTTCGGTCAAAAGCTGGGGAAAGTTCTAGCTCTGGTTCCAGTAATGTATCTTTCAGCTGGTACATGTGTACAACTAATCATCATAGGAGGTGGAACAATACTGCTTTTCATCAGAACTGTGTGTAGGGACGGATCAACCTGTGATCCCAAATCATTGACCGGTTCAGAGTGCTTCTTGGTGTTCATGTGCATGGCCATAGCTGTGGCTCAGTTTCCAAATCTGAACTCCATGGCTTGGGTCTCATTTATTGGCACTACAACTGCAGTTGTGTATTGTACTCTGGTTTGGGGTCTTTCAATTGGAAAGGGCAGGATCAATAACGTGTCATACGACCCGCCAGCAATGGAGTCTAACATGGATAGGTTTGGTGGGATAATGAATGCAATAGGTATCATTTGTCTTGCATTCAGAGGTCACAATGTTATTCTTGAGATACAGGGGACCTTGCCAACAAATCCAAAATTCCCAACATCTAAGACAATGTGGAGAGGAGTGACTATATCATACGCACTCATAGCCATCTGTTTGCTTCCTGTAGCCATAGCTGGATTCTGGACATATGGAAACAAGGTACCCTCCTCTAATGGAGGACTATTGATCGCAATTTCGCAATTCCATGCACATGACACATCAAAAGTAGTGCTGGGACTCATTTACATACTGGTAATCGTTCACTGCTTAAGCACATTCCAAATCTATGGAATGGTGATTTTCGACAAGTTGGAGTCGAATTACACTAGCAGGAAGAACATGCCATGCGCTAGGTGGCTTCGAACAGCTTTGCGTGTGTTCTTTGGAGGAGTGACATTTTTTGCAGCAGTGACCTTTCCATTCTTGGGAAGTTTGGCACCTATTTTAGGAGGGGTGACATTACCTTTGACGTATGCTTATCCATGTTGGATGTGGATTGCTATCAAGAAACCACAACCAAAAGGGGTGATGTGGTGTATTAACATGGGACTTGGATGCTTAGGCCTGTGTTTGAGTGTTATTTTAGTTGTTGCTGCATCATGGAATATAGCTCACAACGGCCTAAAAGCCAACTTCTTCAGGCCTTAA

Protein Analysis

506

Amino Acids

55.14

Weight (kDa)

8.54

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 80 - 493 2e-52 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1033
AccB1I GGYRCC 2 cut(s) 1033, 1309
AccB7I CCANNNNNTGG 1 cut(s) 696
AciI CCGC 2 cut(s) 203, 797
AclWI GGATC 3 cut(s) 599, 601, 782
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 2 cut(s) 423, 923
AcuI CTGAAG 1 cut(s) 1495
AfaI GTAC 5 cut(s) 399, 523, 531, 739, 1035
AfiI CCNNNNNNNGG 4 cut(s) 234, 696, 1298, 1319
AflII CTTAAG 1 cut(s) 1141
AflIII ACRYGT 3 cut(s) 88, 524, 783
AgeI ACCGGT 1 cut(s) 620
AgsI TTSAA 1 cut(s) 759
AjiI CACGTC 1 cut(s) 91
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 706
AlwI GGATC 3 cut(s) 599, 601, 782
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 5 cut(s) 32, 654, 1435, 1492, 1514
ApeKI GCWGC 3 cut(s) 373, 1277, 1466
ApoI RAATTY 2 cut(s) 423, 923
ArsI GACNNNNNNTTYG 2 cut(s) 1321, 1353
AsiGI ACCGGT 1 cut(s) 620
Asp718I GGTACC 1 cut(s) 1033
AspLEI GCGC 2 cut(s) 65, 1223
AspS9I GGNCC 1 cut(s) 903
AsuHPI GGTGA 5 cut(s) 203, 217, 1180, 1339, 1411
AsuII TTCGAA 1 cut(s) 1234
AsuNHI GCTAGC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 903
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BalI TGGCCA 1 cut(s) 656
BanI GGYRCC 2 cut(s) 1033, 1309
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 385, 1289, 1453
BccI CCATC 4 cut(s) 107, 182, 324, 989
BceAI ACGGC 1 cut(s) 1507
BcoDI GTCTC 1 cut(s) 706
BfaI CTAG 7 cut(s) 117, 258, 395, 449, 488, 1200, 1224
BfmI CTRYAG 2 cut(s) 723, 996
BfrI CTTAAG 1 cut(s) 1141
BisI GCNGC 3 cut(s) 374, 1278, 1467
BlsI GCNGC 3 cut(s) 375, 1279, 1468
Bme18I GGWCC 1 cut(s) 903
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 903
BmiI GGNNCC 4 cut(s) 498, 904, 1035, 1311
BmsI GCATC 3 cut(s) 130, 1418, 1478
BmtI GCTAGC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 1432
Bpu14I TTCGAA 1 cut(s) 1234
BpuEI CTTGAG 1 cut(s) 911
BsaBI GATNNNNATC 1 cut(s) 1373
BsaI GGTCTC 1 cut(s) 706
BsaJI CCNNGG 1 cut(s) 690
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 696, 1298, 1319
Bse118I RCCGGY 1 cut(s) 620
Bse1I ACTGG 3 cut(s) 35, 500, 1128
Bse3DI GCAATG 3 cut(s) 250, 459, 810
Bse8I GATNNNNATC 1 cut(s) 1373
BseDI CCNNGG 1 cut(s) 690
BseGI GGATG 4 cut(s) 145, 335, 1368, 1433
BseJI GATNNNNATC 1 cut(s) 1373
BseLI CCNNNNNNNGG 4 cut(s) 234, 696, 1298, 1319
BseMI GCAATG 3 cut(s) 250, 459, 810
BseMII CTCAG 1 cut(s) 683
BseNI ACTGG 3 cut(s) 35, 500, 1128
BseRI GAGGAG 3 cut(s) 966, 1030, 1275
BseXI GCAGC 3 cut(s) 385, 1289, 1453
BseYI CCCAGC 2 cut(s) 475, 1105
BshFI GGCC 5 cut(s) 34, 656, 1437, 1494, 1516
BshNI GGYRCC 2 cut(s) 1033, 1309
BshTI ACCGGT 1 cut(s) 620
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 621
BslFI GGGAC 5 cut(s) 105, 602, 916, 1122, 1434
BslI CCNNNNNNNGG 4 cut(s) 234, 696, 1298, 1319
BsmAI GTCTC 1 cut(s) 706
BsmFI GGGAC 5 cut(s) 105, 602, 916, 1122, 1434
BsmI GAATGC 3 cut(s) 362, 847, 866
BsnI GGCC 5 cut(s) 34, 656, 1437, 1494, 1516
Bso31I GGTCTC 1 cut(s) 706
Bsp119I TTCGAA 1 cut(s) 1234
Bsp1286I GDGCHC 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 529
Bsp143I GATC 4 cut(s) 593, 604, 774, 1059
Bsp19I CCATGG 1 cut(s) 690
BspACI CCGC 2 cut(s) 203, 797
BspANI GGCC 5 cut(s) 34, 656, 1437, 1494, 1516
BspCNI CTCAG 1 cut(s) 682
BspLI GGNNCC 4 cut(s) 498, 904, 1035, 1311
BspMAI CTGCAG 1 cut(s) 727
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 3 cut(s) 599, 601, 782
BspT104I TTCGAA 1 cut(s) 1234
BspT107I GGYRCC 2 cut(s) 1033, 1309
BspTI CTTAAG 1 cut(s) 1141
BspTNI GGTCTC 1 cut(s) 706
BsrDI GCAATG 3 cut(s) 250, 459, 810
BsrFI RCCGGY 1 cut(s) 620
BsrGI TGTACA 1 cut(s) 529
BsrI ACTGG 3 cut(s) 35, 500, 1128
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 1 cut(s) 690
BssMI GATC 4 cut(s) 593, 604, 774, 1059
BssT1I CCWWGG 1 cut(s) 690
Bst4CI ACNGT 3 cut(s) 346, 434, 580
BstAFI CTTAAG 1 cut(s) 1141
BstAUI TGTACA 1 cut(s) 529
BstBI TTCGAA 1 cut(s) 1234
BstC8I GCNNGC 2 cut(s) 259, 801
BstDEI CTNAG 3 cut(s) 669, 936, 1432
BstDSI CCRYGG 1 cut(s) 690
BstENI CCTNNNNNAGG 1 cut(s) 1317
BstF5I GGATG 4 cut(s) 145, 335, 1368, 1433
BstHHI GCGC 2 cut(s) 65, 1223
BstKTI GATC 4 cut(s) 596, 607, 777, 1062
BstMAI GTCTC 1 cut(s) 706
BstMBI GATC 4 cut(s) 593, 604, 774, 1059
BstMWI GCNNNNNNNGC 5 cut(s) 20, 202, 254, 458, 977
BstNSI RCATGY 2 cut(s) 528, 1216
BstSFI CTRYAG 2 cut(s) 723, 996
BstV1I GCAGC 3 cut(s) 385, 1289, 1453
BstXI CCANNNNNNTGG 2 cut(s) 664, 1160
BsuRI GGCC 5 cut(s) 34, 656, 1437, 1494, 1516
BtgI CCRYGG 1 cut(s) 690
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 4 cut(s) 145, 335, 1368, 1433
BtsI GCAGTG 2 cut(s) 1135, 1287
BtsIMutI CAGTG 3 cut(s) 42, 1135, 1287
Cac8I GCNNGC 2 cut(s) 259, 801
CaiI CAGNNNCTG 1 cut(s) 419
CfoI GCGC 2 cut(s) 65, 1223
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 903
CseI GACGC 1 cut(s) 218
Csp6I GTAC 5 cut(s) 398, 522, 530, 738, 1034
CspAI ACCGGT 1 cut(s) 620
CviQI GTAC 5 cut(s) 398, 522, 530, 738, 1034
DdeI CTNAG 3 cut(s) 669, 936, 1432
DpnI GATC 4 cut(s) 595, 606, 776, 1061
DpnII GATC 4 cut(s) 593, 604, 774, 1059
EaeI YGGCCR 1 cut(s) 654
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 690
Eco147I AGGCCT 2 cut(s) 1437, 1516
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 903
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 1495
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 1317
EcoO109I RGGNCCY 1 cut(s) 903
EcoRI GAATTC 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 690
FaqI GGGAC 5 cut(s) 105, 602, 916, 1122, 1434
FauI CCCGC 1 cut(s) 804
FauNDI CATATG 2 cut(s) 386, 1021
Fnu4HI GCNGC 3 cut(s) 374, 1278, 1467
FokI GGATG 4 cut(s) 152, 342, 1375, 1440
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 374, 1278, 1467
FspBI CTAG 7 cut(s) 117, 258, 395, 449, 488, 1200, 1224
GlaI GCGC 2 cut(s) 64, 1222
GluI GCNGC 3 cut(s) 374, 1278, 1467
GsaI CCCAGC 2 cut(s) 479, 1109
HaeIII GGCC 5 cut(s) 34, 656, 1437, 1494, 1516
HapII CCGG 1 cut(s) 621
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 65, 1223
Hin6I GCGC 2 cut(s) 63, 1221
HinP1I GCGC 2 cut(s) 63, 1221
HpaII CCGG 1 cut(s) 621
HphI GGTGA 5 cut(s) 203, 217, 1180, 1339, 1411
Hpy166II GTNNAC 3 cut(s) 400, 530, 1135
Hpy188I TCNGA 8 cut(s) 30, 79, 287, 415, 575, 628, 684, 872
Hpy188III TCNNGA 5 cut(s) 279, 420, 890, 1015, 1378
Hpy8I GTNNAC 3 cut(s) 400, 530, 1135
HpyCH4III ACNGT 3 cut(s) 346, 434, 580
HpyCH4IV ACGT 4 cut(s) 90, 167, 783, 1343
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 202, 254, 458, 977
HpyF3I CTNAG 3 cut(s) 669, 936, 1432
HpySE526I ACGT 4 cut(s) 90, 167, 783, 1343
HspAI GCGC 2 cut(s) 63, 1221
KpnI GGTACC 1 cut(s) 1037
Kzo9I GATC 4 cut(s) 593, 604, 774, 1059
Lsp1109I GCAGC 3 cut(s) 385, 1289, 1453
LweI GCATC 3 cut(s) 130, 1418, 1478
MaeI CTAG 7 cut(s) 117, 258, 395, 449, 488, 1200, 1224
MaeII ACGT 4 cut(s) 90, 167, 783, 1343
MaeIII GTNAC 8 cut(s) 163, 354, 428, 875, 955, 1264, 1282, 1327
MalI GATC 4 cut(s) 595, 606, 776, 1061
MboI GATC 4 cut(s) 593, 604, 774, 1059
MboII GAAGA 5 cut(s) 17, 75, 197, 1219, 1501
MfeI CAATTG 1 cut(s) 759
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 7 cut(s) 175, 423, 759, 923, 1065, 1073, 1192
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 6 cut(s) 239, 297, 410, 818, 1104, 1196
MmeI TCCRAC 2 cut(s) 1164, 1340
Mox20I TGGCCA 1 cut(s) 656
MscI TGGCCA 1 cut(s) 656
MseI TTAA 4 cut(s) 57, 1142, 1413, 1519
MslI CAYNNNNRTG 5 cut(s) 138, 367, 650, 662, 1083
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 1 cut(s) 518
MspCI CTTAAG 1 cut(s) 1141
MspI CCGG 1 cut(s) 621
MunI CAATTG 1 cut(s) 759
Mva1269I GAATGC 3 cut(s) 362, 847, 866
MwoI GCNNNNNNNGC 5 cut(s) 20, 202, 254, 458, 977
NcoI CCATGG 1 cut(s) 690
NdeI CATATG 2 cut(s) 386, 1021
NdeII GATC 4 cut(s) 593, 604, 774, 1059
NheI GCTAGC 1 cut(s) 257
NlaIV GGNNCC 4 cut(s) 498, 904, 1035, 1311
NmuCI GTSAC 6 cut(s) 354, 875, 955, 1264, 1282, 1327
NspI RCATGY 2 cut(s) 528, 1216
NspV TTCGAA 1 cut(s) 1234
PceI AGGCCT 2 cut(s) 1437, 1516
PciI ACATGT 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 789
PctI GAATGC 3 cut(s) 362, 847, 866
PfeI GAWTC 5 cut(s) 25, 80, 282, 410, 1011
PflMI CCANNNNNTGG 1 cut(s) 696
PinAI ACCGGT 1 cut(s) 620
PkrI GCNGC 3 cut(s) 375, 1279, 1468
PleI GAGTC 6 cut(s) 238, 296, 410, 817, 1104, 1195
PpsI GAGTC 6 cut(s) 238, 296, 410, 817, 1104, 1195
PpuMI RGGWCCY 1 cut(s) 903
PscI ACATGT 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 903
PspFI CCCAGC 2 cut(s) 475, 1105
PspN4I GGNNCC 4 cut(s) 498, 904, 1035, 1311
PspPI GGNCC 1 cut(s) 903
PspPPI RGGWCCY 1 cut(s) 903
PstI CTGCAG 1 cut(s) 727
PstNI CAGNNNCTG 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 5 cut(s) 399, 523, 531, 739, 1035
RsaNI GTAC 5 cut(s) 398, 522, 530, 738, 1034
RseI CAYNNNNRTG 5 cut(s) 138, 367, 650, 662, 1083
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 4 cut(s) 57, 1142, 1413, 1519
SatI GCNGC 3 cut(s) 374, 1278, 1467
Sau3AI GATC 4 cut(s) 593, 604, 774, 1059
Sau96I GGNCC 1 cut(s) 903
SchI GAGTC 6 cut(s) 239, 297, 410, 818, 1104, 1196
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 3 cut(s) 130, 1418, 1478
SfcI CTRYAG 2 cut(s) 723, 996
SfuI TTCGAA 1 cut(s) 1234
SinI GGWCC 1 cut(s) 903
SmiMI CAYNNNNRTG 5 cut(s) 138, 367, 650, 662, 1083
SmlI CTYRAG 2 cut(s) 890, 1141
SmoI CTYRAG 2 cut(s) 890, 1141
Sse9I AATT 7 cut(s) 175, 423, 759, 923, 1065, 1073, 1192
SseBI AGGCCT 2 cut(s) 1437, 1516
SsiI CCGC 2 cut(s) 203, 797
SspMI CTAG 7 cut(s) 117, 258, 395, 449, 488, 1200, 1224
SstI GAGCTC 1 cut(s) 198
StuI AGGCCT 2 cut(s) 1437, 1516
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 3 cut(s) 346, 434, 580
TaiI ACGT 4 cut(s) 93, 170, 786, 1346
TaqI TCGA 5 cut(s) 233, 444, 1176, 1190, 1234
TaqII GACCGA 1 cut(s) 455
TasI AATT 7 cut(s) 175, 423, 759, 923, 1065, 1073, 1192
TatI WGTACW 3 cut(s) 397, 529, 737
TfiI GAWTC 5 cut(s) 25, 80, 282, 410, 1011
Tru1I TTAA 4 cut(s) 57, 1142, 1413, 1519
Tru9I TTAA 4 cut(s) 57, 1142, 1413, 1519
TscAI CASTG 3 cut(s) 42, 1142, 1287
TseFI GTSAC 6 cut(s) 354, 875, 955, 1264, 1282, 1327
TseI GCWGC 3 cut(s) 373, 1277, 1466
Tsp45I GTSAC 6 cut(s) 354, 875, 955, 1264, 1282, 1327
TspDTI ATGAA 6 cut(s) 33, 38, 254, 559, 634, 854
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 3 cut(s) 42, 1142, 1287
Van91I CCANNNNNTGG 1 cut(s) 696
Vha464I CTTAAG 1 cut(s) 1141
VpaK11BI GGWCC 1 cut(s) 903
XagI CCTNNNNNAGG 1 cut(s) 1317
XapI RAATTY 2 cut(s) 423, 923
XceI RCATGY 2 cut(s) 528, 1216
XcmI CCANNNNNNNNNTGG 2 cut(s) 1224, 1362
XspI CTAG 7 cut(s) 117, 258, 395, 449, 488, 1200, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.