Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000861

Physical Location & Seq

Genomic Coordinates Reverse (-)

41466113 .. 41468145

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG232800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGAGATCAAGATGATGTTGAAAAACATTCAAGCCAAGGTTTTGCTCAAGACTTTTCCTGCATGAACAATAGAGGTCCACAATCTGCCCAAGTCATACCAGTCACAGTGAGTCCCCAAAACATAGATAGTACAACAGACTGGGAAGGTGGTGAGCTCAATCCACAAGATGCTTGGTTACCCCTCACAGAGTCCAGAAAAGGGACCACCTATTCTGCTACATTTCATCTTCTGTCTTCAGGAATTGGAATTCAAGCCCTTTTACTACCTGTTGCTTTTGCTACTCTTGGATGGGAATGGGGAATCATATGCTTGTCAATAGTGTATTCATGGAAGCTCTACACAATGTCACTCCTTGTAGGATTACACGAGTCTGAAACTGGAATTCGCTATAGTAGATACGTCCACCTTGCAGTAACTGCCTTTGGTCCAAAGCTAGGAAAGTTGCTAACTCTGTTCCCAGTAATGTATCTTTCCGGGGCTACGAAGTCTACCATGGAGTCCTTCAGTGATGTACTGAATTCAGTTGGCATCATTTTCCTTGCATTCAGAGGTCAGAATGTTATCCTTGAGATACAGGGGACATTGCCATCAGACCCAAAACATCCTTCTCATAAGAGAATGTGGAGTGGAGTGACTATATCACATGTACTCATAGCCATGTGTTTATTTCCTCTTGCACTTGGTGGATATTGGGCTTATGGAAACAAGGTACCTTTCAAAAATGCACAAGTGGTGAAAGCAGTTTCTCAATTCCATGGAAAAAACATCTCAGAATTTGTTCCGGGACTATTTTGCATACTGGTACTGATAAATTGCGTAGCTACATTCCAAATCTATGTCATGGTAGTTTTTGACAACATGGAGATGAAGTACACCAGTAAGAAGAAGGAACCGTGCCCGAGATGGCTTCGGATAGGTTTTCGCCTTTTCTTTGGAGGACTCGCATTCTTTGTGGCAGTGGCCTTGCCATTCCTGGAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

328

Amino Acids

36.4

Weight (kDa)

8.16

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	67 - 153	6.9e-11	Transmembrane amino acid transporter protein
Aa_trans	PF01490	164 - 327	3e-19	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35180 AT4G35180
fragaria_vesca	FvH4_2g16040 FvH4_2g16050 FvH4_2g16052 FvH4_2g16052 FvH4_2g16052 FvH4_2g16053 FvH4_2g16053
malus_domestica	MD05G1129500.v1.1 MD05G1129600.v1.1 MD05G1129800.v1.1 MD10G1132700.v1.1
prunus_persica	Prupe.8G173300_v2.0.a1 Prupe.8G173400_v2.0.a1 Prupe.8G173500_v2.0.a1
pyrus_communis	pycom05g12580 pycom05g12590 pycom10g11390 pycom10g11400
rosa_chinensis	RchiOBHm_Chr2g0160371 RchiOBHm_Chr6g0279621 RchiOBHm_Chr6g0279631 RchiOBHm_Chr6g0279671 RchiOBHm_Chr6g0279681 RchiOBHm_Chr6g0279691
rosa_laevigata	RLG00000013127 RLG00000013129 RLG00000013130 RLG00000013132
rosa_multiflora	Rmu_sc0000079.1_g000070 Rmu_sc0000685.1_g000010 Rmu_sc0001225.1_g000006 Rmu_sc0001719.1_g000006 Rmu_sc0003865.1_g000001 Rmu_sc0004010.1_g000009 Rmu_sc0004010.1_g000011
rosa_roxburghii	Rroxscaffold_7G00188730 Rroxscaffold_7G00188750 Rroxscaffold_7G00188760 Rroxscaffold_7G00188780
rosa_rugosa	Rorug06G0126500 Rorug06G0126900 Rorug06G0127000 Rorug06G0127100 Rorug06G0127200.1 Rorug06G0127300 Rorug06G0127700
rosa_samantha	Rh2BG398100 Rh6AG235000 Rh6AG235200 Rh6AG235400 Rh6BG239500 Rh6BG239600 Rh6BG239900 Rh6CG241300 Rh6CG241500 Rh6CG241600 Rh6CG241800 Rh6DG232800 Rh6DG233100 Rh6DG233200 Rh6DG233400
rosa_wichuraiana	Rw6G020510 Rw6G020520 Rw6G020530 Rw7G027130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	712
AccI	GTMKAC	1 cut(s)	491
AcsI	RAATTY	4 cut(s)	249, 384, 520, 776
AcuI	CTGAAG	2 cut(s)	222, 490
AdeI	CACNNNGTG	1 cut(s)	686
AfaI	GTAC	6 cut(s)	133, 516, 651, 714, 807, 875
AfiI	CCNNNNNNNGG	2 cut(s)	201, 437
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	4 cut(s)	23, 33, 254, 721
AjnI	CCWGG	1 cut(s)	975
AjuI	GAANNNNNNNTTGG	2 cut(s)	592, 624
AluBI	AGCT	4 cut(s)	157, 337, 436, 824
AluI	AGCT	4 cut(s)	157, 337, 436, 824
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	974
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	901
AoxI	GGCC	1 cut(s)	963
ApoI	RAATTY	4 cut(s)	249, 384, 520, 776
Asp700I	GAANNNNTTC	1 cut(s)	780
Asp718I	GGTACC	1 cut(s)	712
AspS9I	GGNCC	3 cut(s)	77, 204, 428
AsuC2I	CCSGG	2 cut(s)	478, 786
AsuHPI	GGTGA	2 cut(s)	164, 748
AvaI	CYCGRG	1 cut(s)	901
AvaII	GGWCC	3 cut(s)	77, 204, 428
BaeGI	GKGCMC	1 cut(s)	902
BanI	GGYRCC	1 cut(s)	712
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	3 cut(s)	285, 598, 900
BciT130I	CCWGG	1 cut(s)	977
BcnI	CCSGG	2 cut(s)	478, 786
BcoDI	GTCTC	1 cut(s)	974
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	391
Bme1390I	CCNGG	3 cut(s)	478, 786, 977
Bme18I	GGWCC	3 cut(s)	77, 204, 428
BmeT110I	CYCGRG	1 cut(s)	901
BmgT120I	GGNCC	3 cut(s)	77, 204, 428
BmiI	GGNNCC	3 cut(s)	205, 714, 894
BmrFI	CCNGG	3 cut(s)	478, 786, 977
BmrI	ACTGGG	2 cut(s)	151, 455
BmsI	GCATC	2 cut(s)	160, 540
BmuI	ACTGGG	2 cut(s)	151, 455
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	33, 590
BpuMI	CCSGG	2 cut(s)	478, 786
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	4 cut(s)	37, 477, 495, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 437
Bse1I	ACTGG	6 cut(s)	101, 146, 385, 461, 807, 879
Bse3DI	GCAATG	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	977
BseDI	CCNNGG	4 cut(s)	37, 477, 495, 757
BseGI	GGATG	2 cut(s)	296, 604
BseLI	CCNNNNNNNGG	2 cut(s)	201, 437
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	6 cut(s)	101, 146, 385, 461, 807, 879
BseSI	GKGCMC	1 cut(s)	902
BshFI	GGCC	1 cut(s)	965
BshNI	GGYRCC	1 cut(s)	712
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	901
BsiSI	CCGG	2 cut(s)	477, 785
BslFI	GGGAC	4 cut(s)	99, 217, 595, 801
BslI	CCNNNNNNNGG	2 cut(s)	201, 437
BsmAI	GTCTC	1 cut(s)	974
BsmFI	GGGAC	4 cut(s)	99, 217, 595, 801
BsmI	GAATGC	2 cut(s)	545, 947
BsnI	GGCC	1 cut(s)	965
Bso31I	GGTCTC	1 cut(s)	974
BsoBI	CYCGRG	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	159, 902
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	2 cut(s)	495, 757
BspANI	GGCC	1 cut(s)	965
BspCNI	CTCAG	1 cut(s)	785
BspLI	GGNNCC	3 cut(s)	205, 714, 894
BspT107I	GGYRCC	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	584
BsrI	ACTGG	6 cut(s)	101, 146, 385, 461, 807, 879
BssECI	CCNNGG	4 cut(s)	37, 477, 495, 757
BssMI	GATC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	3 cut(s)	37, 495, 757
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	977
Bst4CI	ACNGT	2 cut(s)	109, 897
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstDEI	CTNAG	1 cut(s)	772
BstDSI	CCRYGG	2 cut(s)	495, 757
BstEII	GGTNACC	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	296, 604
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	974
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	1 cut(s)	977
BstNSI	RCATGY	1 cut(s)	650
BstPI	GGTNACC	1 cut(s)	177
BstSCI	CCNGG	3 cut(s)	476, 784, 975
BstSFI	CTRYAG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	902
BstV2I	GAAGAC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	965
BtgI	CCRYGG	2 cut(s)	495, 757
BtsCI	GGATG	2 cut(s)	296, 604
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	3 cut(s)	114, 514, 966
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr13I	GGNCC	3 cut(s)	77, 204, 428
Csp6I	GTAC	6 cut(s)	132, 515, 650, 713, 806, 874
CviAII	CATG	8 cut(s)	64, 330, 496, 647, 661, 758, 844, 862
CviQI	GTAC	6 cut(s)	132, 515, 650, 713, 806, 874
DdeI	CTNAG	1 cut(s)	772
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DraIII	CACNNNGTG	1 cut(s)	686
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	37, 495, 757
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	974
Eco47I	GGWCC	3 cut(s)	77, 204, 428
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	222, 490
Eco88I	CYCGRG	1 cut(s)	901
Eco91I	GGTNACC	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	177
EcoRI	GAATTC	3 cut(s)	249, 384, 520
EcoRII	CCWGG	1 cut(s)	975
EcoT14I	CCWWGG	3 cut(s)	37, 495, 757
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	37, 495, 757
FaeI	CATG	8 cut(s)	67, 333, 499, 650, 664, 761, 847, 865
FaqI	GGGAC	4 cut(s)	99, 217, 595, 801
FatI	CATG	8 cut(s)	63, 329, 495, 646, 660, 757, 843, 861
FauNDI	CATATG	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	491
FokI	GGATG	2 cut(s)	303, 591
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	965
HapII	CCGG	2 cut(s)	477, 785
Hin1II	CATG	8 cut(s)	67, 333, 499, 650, 664, 761, 847, 865
HinfI	GANTC	6 cut(s)	112, 191, 303, 371, 500, 942
HpaII	CCGG	2 cut(s)	477, 785
HphI	GGTGA	2 cut(s)	164, 748
Hpy166II	GTNNAC	4 cut(s)	80, 406, 492, 876
Hpy188I	TCNGA	6 cut(s)	376, 551, 558, 595, 775, 915
Hpy188III	TCNNGA	4 cut(s)	11, 50, 195, 240
Hpy8I	GTNNAC	4 cut(s)	80, 406, 492, 876
HpyAV	CCTTC	4 cut(s)	140, 514, 618, 883
HpyCH4III	ACNGT	2 cut(s)	109, 897
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	6 cut(s)	63, 413, 545, 680, 728, 798
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	772
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	8 cut(s)	67, 333, 499, 650, 664, 761, 847, 865
KpnI	GGTACC	1 cut(s)	716
Kzo9I	GATC	1 cut(s)	7
LweI	GCATC	2 cut(s)	160, 540
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	5 cut(s)	103, 177, 348, 415, 634
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	3 cut(s)	221, 228, 898
MhlI	GDGCHC	2 cut(s)	159, 902
MluCI	AATT	7 cut(s)	243, 249, 384, 520, 752, 776, 814
MlyI	GAGTC	5 cut(s)	121, 200, 380, 509, 936
MnlI	CCTC	5 cut(s)	68, 194, 545, 684, 932
MroXI	GAANNNNTTC	1 cut(s)	780
MslI	CAYNNNNRTG	2 cut(s)	659, 866
MspI	CCGG	2 cut(s)	477, 785
MspR9I	CCNGG	3 cut(s)	478, 786, 977
Mva1269I	GAATGC	2 cut(s)	545, 947
MvaI	CCWGG	1 cut(s)	977
MwoI	GCNNNNNNNGC	1 cut(s)	419
NciI	CCSGG	2 cut(s)	478, 786
NcoI	CCATGG	2 cut(s)	495, 757
NdeI	CATATG	1 cut(s)	308
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	8 cut(s)	67, 333, 499, 650, 664, 761, 847, 865
NlaIV	GGNNCC	3 cut(s)	205, 714, 894
NmuCI	GTSAC	3 cut(s)	103, 348, 634
NspI	RCATGY	1 cut(s)	650
PciI	ACATGT	1 cut(s)	646
PctI	GAATGC	2 cut(s)	545, 947
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	1 cut(s)	303
PfoI	TCCNGGA	2 cut(s)	784, 975
PleI	GAGTC	5 cut(s)	120, 199, 379, 508, 936
PpsI	GAGTC	5 cut(s)	120, 199, 379, 508, 936
PscI	ACATGT	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	975
PspEI	GGTNACC	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	975
PspN4I	GGNNCC	3 cut(s)	205, 714, 894
PspPI	GGNCC	3 cut(s)	77, 204, 428
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	6 cut(s)	133, 516, 651, 714, 807, 875
RsaNI	GTAC	6 cut(s)	132, 515, 650, 713, 806, 874
RseI	CAYNNNNRTG	2 cut(s)	659, 866
SacI	GAGCTC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	3 cut(s)	77, 204, 428
SchI	GAGTC	5 cut(s)	121, 200, 380, 509, 936
ScrFI	CCNGG	3 cut(s)	478, 786, 977
SduI	GDGCHC	2 cut(s)	159, 902
SfaNI	GCATC	2 cut(s)	160, 540
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	3 cut(s)	77, 204, 428
SmiMI	CAYNNNNRTG	2 cut(s)	659, 866
SmlI	CTYRAG	2 cut(s)	48, 569
SmoI	CTYRAG	2 cut(s)	48, 569
Sse9I	AATT	7 cut(s)	243, 249, 384, 520, 752, 776, 814
SspMI	CTAG	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	476, 784, 975
StyI	CCWWGG	3 cut(s)	37, 495, 757
TaaI	ACNGT	2 cut(s)	109, 897
TaiI	ACGT	1 cut(s)	405
TasI	AATT	7 cut(s)	243, 249, 384, 520, 752, 776, 814
TatI	WGTACW	4 cut(s)	131, 514, 649, 873
TfiI	GAWTC	1 cut(s)	303
TscAI	CASTG	3 cut(s)	114, 514, 966
TseFI	GTSAC	3 cut(s)	103, 348, 634
Tsp45I	GTSAC	3 cut(s)	103, 348, 634
TspDTI	ATGAA	4 cut(s)	80, 215, 318, 884
TspRI	CASTG	3 cut(s)	114, 514, 966
VpaK11BI	GGWCC	3 cut(s)	77, 204, 428
XapI	RAATTY	4 cut(s)	249, 384, 520, 776
XceI	RCATGY	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.