MD10G1132700.v1.1

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
21372870 .. 21382008
9139 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1132700.v1.1.491

Sequence Viewer

Length: 1521 bp
ATGAGTGAGTGGCTTGAATTTTACAGCAATTGGAGGAAAATGGCAGACTTGGAAGAGGTGGTTGTTGAAGCAAATTGCAGGGAAGAAATAACTAGGCATAGCCATTCCTTAAAAAGCTTGTTCAGAAGCTCATCAGGTTACTCTGCTCAAGTCATTCCCATCACAACTACTCCCCCAAATGAATCAACTGAAAAATGGACAGGTGGTGAGCTCATTCCACAGGATGCTTGGCTGCCCATCACAGAATCCAGGAATGGGAATGTGTTTTCAGCTACCTTTCATTTACTTTGCTCAGGAATTGGGATCCAATCCCTTTTACTGCCTCTTGCGTTTGCCACTCTTGGATGGGCATTGGGAATTATATGCTTGTCACTAGCATTCGCATGGCAACTCTACACCGCATGGCTTCTTGTACATCTACACGAATCGGACACCGGAATTCGGTACAGTAGATACCTCCACCTTGCTATAACAGCCTTCGGTCCAAAGTTAGGAAAACTGCTCACTATATTCCCAGTAATGTACCTATCAGGGGGTACATGTGCCCAGCTGATCATCATAGGAGGTGGAACCATGAAGCTTTTCTTAAAAGCTGTTTGTGATGTTAACTCAGTGACTGGCACAGAGTGCTTCTTGTTGTTCGTATGCATGGCCATTGTTGTGGCTCAGTTTCCCAACTTGAACTCCATAGCTTGGGTCTCACTGATTGGTGCCACCACTGCGATTGCCTACTATACCCTGATTTGGGGCCTTTTAATCGGCAAGGGCAGGCCTAGTGGCATTTCATACAACCCACCGGAGATGGAGTCAAACATGGATAGATTTGGTGGTGTACTGAACTCGGTTGGCATCATTTTTCTTGCATTCAAAGGTCATAATGTTATCCTTGAGATTCAAGGGACATTGCCATCTAGTCCAAAACAGAGATCTCAAAACCGGATGTGGAGAGGAGTGACTATATCTTATGCACTTAAAGCAATGTGCTTCCTTCCTCTTGCCATAGCTGGATTTTGGGCTTATGGAAACAAAATACCATCTTCATATGGAGGACTATTGACCTCTTTTTCACAGTTCAATGGGCGTAAAAACACTTCAAAAGCTGTGTTGGGACTACTTTGCATACTAGTAGTGATAAACTGCTTGAGCACTTTCCAAATCTACAGCATGGTAGTTTTTGATAATTTGGAGTTTAAGTACACTAGCAAGAAGAACAAGCCATGTGCAAGGTGGCTTCGGATAGCTTTTCGGATTTTCTTCGGAGGACTGGCATTTTTCATAGCAGTTGCTTTTCCATTCTTGCCGAGCCTAGCACCTCTAATCGGAGGCATGACACTGCCACTGGCATGTGCTTATCCGTGTTTCATGTGGATCACAATGAAGAAACCGGAGCCTAAGAGTACTATGTGGTTTGTGAACATTGGACTTGGATTCTTGGGGCTGAGTTTGAGTGTTGTTTTAGTCATTGCATCAGTTTGGAATTTAGCCGACAAAGGTTTACATGCCAATTTCTTCAGACCTTAA

Protein Analysis

507

Amino Acids

55.89

Weight (kDa)

9.2

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 85 - 491 3.2e-51 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 693
AciI CCGC 1 cut(s) 399
AclWI GGATC 3 cut(s) 298, 311, 1376
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 3 cut(s) 17, 438, 1477
AcuI CTGAAG 1 cut(s) 1495
AdeI CACNNNGTG 1 cut(s) 627
AfaI GTAC 7 cut(s) 414, 446, 524, 538, 834, 1196, 1399
AfiI CCNNNNNNNGG 8 cut(s) 255, 441, 491, 532, 693, 744, 745, 1319
AflIII ACRYGT 1 cut(s) 539
AgsI TTSAA 7 cut(s) 17, 68, 682, 868, 896, 1075, 1095
AhlI ACTAGT 1 cut(s) 1123
AjnI CCWGG 1 cut(s) 248
Alw21I GWGCWC 2 cut(s) 213, 1148
Alw26I GTCTC 1 cut(s) 703
AlwI GGATC 3 cut(s) 298, 311, 1376
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 3 cut(s) 651, 748, 770
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 3 cut(s) 17, 438, 1477
Asp700I GAANNNNTTC 1 cut(s) 581
AspS9I GGNCC 2 cut(s) 482, 748
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 482
BaeGI GKGCMC 1 cut(s) 547
BalI TGGCCA 1 cut(s) 653
BamHI GGATCC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 1075, 1107
Bbv12I GWGCWC 2 cut(s) 213, 1148
BbvI GCAGC 1 cut(s) 219
BccI CCATC 6 cut(s) 167, 245, 339, 796, 916, 1042
BciT130I CCWGG 1 cut(s) 250
BclI TGATCA 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 703
BcuI ACTAGT 1 cut(s) 1123
BfaI CTAG 7 cut(s) 93, 374, 774, 912, 1124, 1200, 1307
BfmI CTRYAG 1 cut(s) 1159
BglII AGATCT 1 cut(s) 926
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
BmcAI AGTACT 1 cut(s) 1399
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 482, 748
BmiI GGNNCC 5 cut(s) 305, 571, 712, 749, 1389
BmrFI CCNGG 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 3 cut(s) 214, 858, 1475
BmuI ACTGGG 1 cut(s) 509
Bpu10I CCTNAGC 1 cut(s) 292
BpuEI CTTGAG 3 cut(s) 132, 908, 1162
BsaI GGTCTC 1 cut(s) 703
BsaWI WCCGGW 4 cut(s) 434, 796, 936, 1384
BsaXI ACNNNNNCTCC 8 cut(s) 154, 184, 668, 698, 791, 821, 1178, 1208
Bsc4I CCNNNNNNNGG 8 cut(s) 255, 441, 491, 532, 693, 744, 745, 1319
Bse1I ACTGG 4 cut(s) 515, 622, 1269, 1344
Bse3DI GCAATG 3 cut(s) 902, 984, 1461
BseBI CCWGG 1 cut(s) 250
BseGI GGATG 3 cut(s) 229, 350, 945
BseLI CCNNNNNNNGG 8 cut(s) 255, 441, 491, 532, 693, 744, 745, 1319
BseMI GCAATG 3 cut(s) 902, 984, 1461
BseMII CTCAG 4 cut(s) 306, 624, 680, 1430
BseNI ACTGG 4 cut(s) 515, 622, 1269, 1344
BseRI GAGGAG 1 cut(s) 963
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 1 cut(s) 219
BseYI CCCAGC 1 cut(s) 546
BshFI GGCC 3 cut(s) 653, 750, 772
BshNI GGYRCC 1 cut(s) 710
BsiHKAI GWGCWC 2 cut(s) 213, 1148
BsiSI CCGG 4 cut(s) 435, 797, 937, 1385
BslFI GGGAC 2 cut(s) 913, 1122
BslI CCNNNNNNNGG 8 cut(s) 255, 441, 491, 532, 693, 744, 745, 1319
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 2 cut(s) 913, 1122
BsmI GAATGC 2 cut(s) 377, 863
BsnI GGCC 3 cut(s) 653, 750, 772
Bso31I GGTCTC 1 cut(s) 703
Bsp1286I GDGCHC 3 cut(s) 213, 547, 1148
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 4 cut(s) 303, 552, 926, 1368
BspACI CCGC 1 cut(s) 399
BspANI GGCC 3 cut(s) 653, 750, 772
BspCNI CTCAG 4 cut(s) 305, 623, 679, 1431
BspLI GGNNCC 5 cut(s) 305, 571, 712, 749, 1389
BspPI GGATC 3 cut(s) 298, 311, 1376
BspT107I GGYRCC 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 703
BsrDI GCAATG 3 cut(s) 902, 984, 1461
BsrGI TGTACA 1 cut(s) 412
BsrI ACTGG 4 cut(s) 515, 622, 1269, 1344
BssMI GATC 4 cut(s) 303, 552, 926, 1368
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 449, 1071
Bst6I CTCTTC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 627
BstAUI TGTACA 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 770
BstDEI CTNAG 5 cut(s) 292, 610, 666, 1392, 1439
BstF5I GGATG 3 cut(s) 229, 350, 945
BstKTI GATC 4 cut(s) 306, 555, 929, 1371
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 4 cut(s) 303, 552, 926, 1368
BstMWI GCNNNNNNNGC 4 cut(s) 473, 627, 719, 974
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 3 cut(s) 543, 1347, 1502
BstSCI CCNGG 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 1159
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 1 cut(s) 219
BstX2I RGATCY 2 cut(s) 303, 926
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 2 cut(s) 303, 926
BsuRI GGCC 3 cut(s) 653, 750, 772
BtsCI GGATG 3 cut(s) 229, 350, 945
BtsI GCAGTG 2 cut(s) 717, 1331
BtsIMutI CAGTG 5 cut(s) 618, 701, 717, 1331, 1337
Cac8I GCNNGC 1 cut(s) 770
CaiI CAGNNNCTG 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 482, 748
Csp6I GTAC 7 cut(s) 413, 445, 523, 537, 833, 1195, 1398
CspCI CAANNNNNGTGG 2 cut(s) 706, 741
CviQI GTAC 7 cut(s) 413, 445, 523, 537, 833, 1195, 1398
DdeI CTNAG 5 cut(s) 292, 610, 666, 1392, 1439
DpnI GATC 4 cut(s) 305, 554, 928, 1370
DpnII GATC 4 cut(s) 303, 552, 926, 1368
DraIII CACNNNGTG 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 211
Eco147I AGGCCT 1 cut(s) 772
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 482
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 1495
EcoICRI GAGCTC 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 748
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 248
EcoT22I ATGCAT 1 cut(s) 650
EcoT38I GRGCYC 1 cut(s) 213
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 2 cut(s) 913, 1122
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 3 cut(s) 236, 357, 952
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 7 cut(s) 93, 374, 774, 912, 1124, 1200, 1307
GluI GCNGC 1 cut(s) 233
GsaI CCCAGC 1 cut(s) 550
HaeIII GGCC 3 cut(s) 653, 750, 772
HapII CCGG 4 cut(s) 435, 797, 937, 1385
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 2 cut(s) 115, 578
HinfI GANTC 6 cut(s) 182, 245, 425, 806, 892, 1428
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 4 cut(s) 435, 797, 937, 1385
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 5 cut(s) 607, 833, 1197, 1414, 1496
Hpy188I TCNGA 7 cut(s) 125, 430, 1236, 1248, 1259, 1322, 1514
Hpy188III TCNNGA 1 cut(s) 294
Hpy8I GTNNAC 5 cut(s) 607, 833, 1197, 1414, 1496
HpyAV CCTTC 2 cut(s) 487, 998
HpyCH4III ACNGT 2 cut(s) 449, 1071
HpyCH4V TGCA 7 cut(s) 78, 648, 863, 968, 1119, 1223, 1466
HpyF10VI GCNNNNNNNGC 4 cut(s) 473, 627, 719, 974
HpyF3I CTNAG 5 cut(s) 292, 610, 666, 1392, 1439
Ksp22I TGATCA 1 cut(s) 552
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 4 cut(s) 303, 552, 926, 1368
LmnI GCTCC 1 cut(s) 1387
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 3 cut(s) 214, 858, 1475
MaeI CTAG 7 cut(s) 93, 374, 774, 912, 1124, 1200, 1307
MaeIII GTNAC 4 cut(s) 137, 369, 613, 952
MalI GATC 4 cut(s) 305, 554, 928, 1370
MboI GATC 4 cut(s) 303, 552, 926, 1368
MboII GAAGA 7 cut(s) 65, 95, 1029, 1219, 1246, 1390, 1501
MfeI CAATTG 1 cut(s) 28
MflI RGATCY 2 cut(s) 303, 926
MhlI GDGCHC 3 cut(s) 213, 547, 1148
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 9 cut(s) 17, 28, 73, 297, 357, 438, 1180, 1477, 1504
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 1 cut(s) 815
Mox20I TGGCCA 1 cut(s) 653
Mph1103I ATGCAT 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 581
MscI TGGCCA 1 cut(s) 653
MseI TTAA 7 cut(s) 110, 587, 606, 755, 972, 1191, 1519
MslI CAYNNNNRTG 3 cut(s) 382, 659, 1342
Msp20I TGGCCA 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 4 cut(s) 435, 797, 937, 1385
MspR9I CCNGG 1 cut(s) 250
MunI CAATTG 1 cut(s) 28
Mva1269I GAATGC 2 cut(s) 377, 863
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 4 cut(s) 473, 627, 719, 974
NdeI CATATG 1 cut(s) 1042
NdeII GATC 4 cut(s) 303, 552, 926, 1368
NlaIV GGNNCC 5 cut(s) 305, 571, 712, 749, 1389
NmeAIII GCCGAG 1 cut(s) 1326
NmuCI GTSAC 3 cut(s) 369, 613, 952
NsiI ATGCAT 1 cut(s) 650
NspI RCATGY 3 cut(s) 543, 1347, 1502
PceI AGGCCT 1 cut(s) 772
PciI ACATGT 1 cut(s) 539
PctI GAATGC 2 cut(s) 377, 863
PdmI GAANNNNTTC 1 cut(s) 581
PfeI GAWTC 5 cut(s) 182, 245, 425, 892, 1428
PflMI CCANNNNNTGG 1 cut(s) 693
PfoI TCCNGGA 1 cut(s) 248
PkrI GCNGC 1 cut(s) 234
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
PscI ACATGT 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 546
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 5 cut(s) 305, 571, 712, 749, 1389
PspPI GGNCC 2 cut(s) 482, 748
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 2 cut(s) 303, 926
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 7 cut(s) 414, 446, 524, 538, 834, 1196, 1399
RsaNI GTAC 7 cut(s) 413, 445, 523, 537, 833, 1195, 1398
RseI CAYNNNNRTG 3 cut(s) 382, 659, 1342
SacI GAGCTC 1 cut(s) 213
SaqAI TTAA 7 cut(s) 110, 587, 606, 755, 972, 1191, 1519
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 4 cut(s) 303, 552, 926, 1368
Sau96I GGNCC 2 cut(s) 482, 748
ScaI AGTACT 1 cut(s) 1399
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 3 cut(s) 213, 547, 1148
SfaNI GCATC 3 cut(s) 214, 858, 1475
SfcI CTRYAG 1 cut(s) 1159
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 3 cut(s) 382, 659, 1342
SmlI CTYRAG 3 cut(s) 147, 887, 1141
SmoI CTYRAG 3 cut(s) 147, 887, 1141
SpeI ACTAGT 1 cut(s) 1123
Sse9I AATT 9 cut(s) 17, 28, 73, 297, 357, 438, 1180, 1477, 1504
SseBI AGGCCT 1 cut(s) 772
SsiI CCGC 1 cut(s) 399
SspMI CTAG 7 cut(s) 93, 374, 774, 912, 1124, 1200, 1307
SstI GAGCTC 1 cut(s) 213
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 449, 1071
TaqII GACCGA 1 cut(s) 470
TasI AATT 9 cut(s) 17, 28, 73, 297, 357, 438, 1180, 1477, 1504
TatI WGTACW 4 cut(s) 412, 832, 1194, 1397
TfiI GAWTC 5 cut(s) 182, 245, 425, 892, 1428
Tru1I TTAA 7 cut(s) 110, 587, 606, 755, 972, 1191, 1519
Tru9I TTAA 7 cut(s) 110, 587, 606, 755, 972, 1191, 1519
TscAI CASTG 5 cut(s) 618, 708, 724, 1338, 1344
TseFI GTSAC 3 cut(s) 369, 613, 952
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 3 cut(s) 369, 613, 952
TspDTI ATGAA 8 cut(s) 195, 269, 590, 774, 1029, 1264, 1351, 1391
TspGWI ACGGA 1 cut(s) 1344
TspRI CASTG 5 cut(s) 618, 708, 724, 1338, 1344
Van91I CCANNNNNTGG 1 cut(s) 693
VpaK11BI GGWCC 1 cut(s) 482
XapI RAATTY 3 cut(s) 17, 438, 1477
XceI RCATGY 3 cut(s) 543, 1347, 1502
XcmI CCANNNNNNNNNTGG 2 cut(s) 225, 1224
XmnI GAANNNNTTC 1 cut(s) 581
XspI CTAG 7 cut(s) 93, 374, 774, 912, 1124, 1200, 1307
ZrmI AGTACT 1 cut(s) 1399
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.