FvH4_2g22180

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003059
Physical Location & Seq
Reverse (-)
18254408 .. 18255723
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22180.t1

Sequence Viewer

Length: 522 bp
ATGAGGTTGTATCCGCCGGTTCCGATCGACGTCAAAGAAGCGGTGAACGACGACGTTTTGCCGGACGGGACTATAGTGAAGAAGGGGATGTCAGTGGCGTACCATGTTTACGCTATGGGGAGGATGGAGAAGATATGGGGGAAGGACTGGGCGGAGTTCCGACCCGAGAGGTGGTTGGAGCGTGAAGTGGCGGCGGATAAGTGGAGGTTCGTGGCAAAGGACGTTTTTAGCTACCCGGTGTTTCAGGCCGGGCCGAGGGTTTGTTTGGGGAAAGAGATGGCGTTTGATCTGCAGATGAAGAGAGTGGTGGTTGGGGTTTTGAAGAGGTTTCAGGTTGTGCCGGAGAAGCGGGAGAATGAGGAGGAGCCGAAGTTTGTTGCTCACCTTATCGCGAAAATGAAAGGGGTGGGAACTCTTGAGCATTTGTTTCGTGATTGCCGGATTGCAAAGGAAATCTTCTCTGTTTCTCCTTTCTCCTTTCCGGCATTTTCAAGTACTCAGAAGGATTGGCTTCTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

174

Amino Acids

20.07

Weight (kDa)

9.04

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 121 4.2e-20 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AccII CGCG 1 cut(s) 392
AciI CCGC 6 cut(s) 14, 41, 152, 191, 194, 349
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 101, 496
AfiI CCNNNNNNNGG 2 cut(s) 171, 255
AgsI TTSAA 2 cut(s) 322, 492
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 246, 251
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 2 cut(s) 236, 250
AsuHPI GGTGA 2 cut(s) 55, 374
AvaI CYCGRG 1 cut(s) 164
BccI CCATC 2 cut(s) 118, 271
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciVI GTATCC 1 cut(s) 21
BcnI CCSGG 2 cut(s) 236, 250
BfmI CTRYAG 2 cut(s) 72, 290
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 2 cut(s) 236, 250
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 21, 366
BmrFI CCNGG 2 cut(s) 236, 250
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 2 cut(s) 236, 250
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 255
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 93, 129
BseLI CCNNNNNNNGG 2 cut(s) 171, 255
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 374, 377
Bsh1236I CGCG 1 cut(s) 392
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 248, 253
BsiEI CGRYCG 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 7 cut(s) 17, 62, 236, 249, 341, 439, 482
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 171, 255
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 2 cut(s) 248, 253
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 2 cut(s) 24, 286
Bsp68I TCGCGA 1 cut(s) 392
BspACI CCGC 6 cut(s) 14, 41, 152, 191, 194, 349
BspANI GGCC 2 cut(s) 248, 253
BspCNI CTCAG 1 cut(s) 511
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 2 cut(s) 21, 366
BspMAI CTGCAG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 24, 286
BssNI GRCGYC 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 293, 317
BstACI GRCGYC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 93, 129
BstFNI CGCG 1 cut(s) 392
BstKTI GATC 2 cut(s) 27, 289
BstMBI GATC 2 cut(s) 24, 286
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 234, 248
BstSFI CTRYAG 2 cut(s) 72, 290
BstUI CGCG 1 cut(s) 392
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 2 cut(s) 248, 253
BtsCI GGATG 2 cut(s) 93, 129
BtsIMutI CAGTG 1 cut(s) 99
BtuMI TCGCGA 1 cut(s) 392
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 100, 495
CviAII CATG 1 cut(s) 104
CviJI RGCY 5 cut(s) 231, 248, 253, 367, 511
CviKI_1 RGCY 5 cut(s) 231, 248, 253, 367, 511
CviQI GTAC 2 cut(s) 100, 495
DdeI CTNAG 1 cut(s) 498
DpnI GATC 2 cut(s) 26, 288
DpnII GATC 2 cut(s) 24, 286
Eam1104I CTCTTC 2 cut(s) 293, 317
EarI CTCTTC 2 cut(s) 293, 317
EciI GGCGGA 2 cut(s) 167, 209
Eco88I CYCGRG 1 cut(s) 164
FaeI CATG 1 cut(s) 107
FaiI YATR 4 cut(s) 74, 105, 116, 136
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 82
FatI CATG 1 cut(s) 103
FauI CCCGC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 2 cut(s) 100, 136
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 2 cut(s) 248, 253
HapII CCGG 7 cut(s) 17, 62, 236, 249, 341, 439, 482
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 1 cut(s) 107
HpaII CCGG 7 cut(s) 17, 62, 236, 249, 341, 439, 482
HphI GGTGA 2 cut(s) 55, 374
Hpy166II GTNNAC 2 cut(s) 46, 109
Hpy188I TCNGA 3 cut(s) 24, 161, 501
Hpy188III TCNNGA 3 cut(s) 391, 416, 431
Hpy8I GTNNAC 2 cut(s) 46, 109
Hpy99I CGWCG 3 cut(s) 32, 53, 56
HpyAV CCTTC 3 cut(s) 76, 136, 496
HpyCH4IV ACGT 3 cut(s) 30, 54, 222
HpyCH4V TGCA 2 cut(s) 292, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 3 cut(s) 30, 54, 222
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 2 cut(s) 24, 286
LmnI GCTCC 2 cut(s) 178, 364
MaeII ACGT 3 cut(s) 30, 54, 222
MalI GATC 2 cut(s) 26, 288
MboI GATC 2 cut(s) 24, 286
MboII GAAGA 5 cut(s) 91, 142, 310, 334, 448
MmeI TCCRAC 2 cut(s) 156, 184
MnlI CCTC 7 cut(s) 114, 162, 198, 249, 318, 352, 355
MspI CCGG 7 cut(s) 17, 62, 236, 249, 341, 439, 482
MspR9I CCNGG 2 cut(s) 236, 250
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 346
NciI CCSGG 2 cut(s) 236, 250
NdeII GATC 2 cut(s) 24, 286
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 21, 366
NmeAIII GCCGAG 1 cut(s) 279
NruI TCGCGA 1 cut(s) 392
PkrI GCNGC 1 cut(s) 193
Ple19I CGATCG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 21, 366
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 294
PvuI CGATCG 1 cut(s) 27
RruI TCGCGA 1 cut(s) 392
RsaI GTAC 2 cut(s) 101, 496
RsaNI GTAC 2 cut(s) 100, 495
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 24, 286
Sau96I GGNCC 1 cut(s) 251
ScaI AGTACT 1 cut(s) 496
ScrFI CCNGG 2 cut(s) 236, 250
SfcI CTRYAG 2 cut(s) 72, 290
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SsiI CCGC 6 cut(s) 14, 41, 152, 191, 194, 349
StyD4I CCNGG 2 cut(s) 234, 248
TaiI ACGT 3 cut(s) 33, 57, 225
TaqI TCGA 1 cut(s) 27
TatI WGTACW 1 cut(s) 494
TauI GCSGC 1 cut(s) 194
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 311, 413
TspRI CASTG 1 cut(s) 99
ZraI GACGTC 1 cut(s) 31
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.