Rh6AG159000

Cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003059
Physical Location & Seq
Reverse (-)
24913955 .. 24914284
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG159000.1

Sequence Viewer

Length: 330 bp
ATGGGGCAAGGATTGGGTCGAGGTCTGACCCAAGAGGTGATTGAACGTGATGTGGCGACGGAGAAGCAGAGGTTCATGGCGAAGGACTCGTTTACCTACCCAATGTTTCAGGCGGGCCCGAGGATCTGTTTGGGGAAGGAGATGTCGTTTTTGCAGATGAAAAGGGTGGTGGCTGAGGTTTTGAAGAGGTTTAAGGTTGTGCCGGTCGGAGAAGAGGGAGAATGGGAAGGAGCCAGAGTTGCTTGCCTTCCTAACCGTAAAAATGAAAGATGGGTTTCCGGTGACCGTTGTGGAGAGGGGCTTGAGTATTCGACTATTTATAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

109

Amino Acids

12.37

Weight (kDa)

8.5

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 28 - 71 4.5e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 131
AgsI TTSAA 2 cut(s) 44, 184
AlwI GGATC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 115
ApaI GGGCCC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 115, 116
AsuHPI GGTGA 2 cut(s) 49, 293
AvaI CYCGRG 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 115, 116
BmiI GGNNCC 2 cut(s) 117, 232
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 222, 252
Bse118I RCCGGY 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 165
BseSI GKGCMC 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 203, 279
BsnI GGCC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 118
Bsp120I GGGCCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 117, 232
BspPI GGATC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 257, 287
Bst6I CTCTTC 2 cut(s) 179, 207
BstC8I GCNNGC 2 cut(s) 115, 244
BstDEI CTNAG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 281
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstPI GGTNACC 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 115, 244
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 115, 116
CviAII CATG 1 cut(s) 76
CviJI RGCY 4 cut(s) 117, 173, 233, 301
CviKI_1 RGCY 4 cut(s) 117, 173, 233, 301
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
Eam1104I CTCTTC 2 cut(s) 179, 207
EarI CTCTTC 2 cut(s) 179, 207
Eco24I GRGCYC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 118
Eco91I GGTNACC 1 cut(s) 281
EcoO65I GGTNACC 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 1 cut(s) 79
FaiI YATR 2 cut(s) 77, 321
FatI CATG 1 cut(s) 75
FauI CCCGC 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 117
HapII CCGG 2 cut(s) 203, 279
Hin1II CATG 1 cut(s) 79
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 203, 279
HphI GGTGA 2 cut(s) 49, 293
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 27, 209
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 4 cut(s) 76, 130, 221, 257
HpyCH4III ACNGT 2 cut(s) 257, 287
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 1 cut(s) 79
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 4 cut(s) 95, 216, 247, 292
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 281
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 2 cut(s) 196, 224
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 119
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 8 cut(s) 14, 28, 63, 114, 169, 180, 208, 289
MseI TTAA 1 cut(s) 192
MspI CCGG 2 cut(s) 203, 279
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 117, 232
NmuCI GTSAC 1 cut(s) 281
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 117, 232
PspOMI GGGCCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 115, 116
PsuI RGATCY 1 cut(s) 123
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 115, 116
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 119
SetI ASST 8 cut(s) 25, 39, 49, 74, 98, 180, 191, 198
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SsiI CCGC 1 cut(s) 113
TaaI ACNGT 2 cut(s) 257, 287
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 19, 311
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 64, 173, 279
TspGWI ACGGA 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.