Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003059

Physical Location & Seq

Genomic Coordinates Reverse (-)

37871842 .. 37874148

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGGAGGAGTAGTAGAAGGAGTTTCCAATTGGCGACATGGTGGTGCTCCTTCATCCGTAATAAAAGGCATGGGAAAGAGAAGGGCGTCATTGTGCAGGTTCTTGTGCATTGCGAAAGAGGCGGTAGATGGAGCAGATCGGGGCAAGGATCGGCCAAGTTCCGACCTGGGAGGTGCTTGGAGTGTGGCGTGGCGACGGAGACGTGGTGGTTCGTGGCGAAGGACTCGTTTATCTACCCGGTGTTTCGGGAGGGGCCGAGGATCCGTTTGGGAAAGGAAATGGCATTTTTGCAGATGAAAAGAGTGTTGGTTGAGGCTTTGAAGAGGGTGGTGGAGAGGGGTTTGTGGGAAGAGGAAGTGATGAAGATTGAGCGAGATGAAGAAAGATTTTGTGTTTCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

p450

Protein Analysis

134

Amino Acids

15.88

Weight (kDa)

10.18

Isoelectric Point (pI)

65.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22180
rosa_chinensis	RchiOBHm_Chr2g0099721 RchiOBHm_Chr5g0014701 RchiOBHm_Chr6g0268151 RchiOBHm_Chr7g0195941
rosa_laevigata	RLG00000012942 RLG00000013929 RLG00000035083
rosa_multiflora	Rmu_co7982498.1_g000001 Rmu_sc0000120.1_g000021 Rmu_sc0000666.1_g000013 Rmu_sc0001839.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018670 Rroxscaffold_5G00357920 Rroxscaffold_7G00200000
rosa_rugosa	Rorug01G0481900 Rorug05G0020100 Rorug06G0026100 Rorug06G0039200 Rorug06G0200100 Rorug06G0200700
rosa_samantha	Rh5AG115800 Rh5AG441000 Rh5BG112500 Rh5CG124100 Rh5CG480200 Rh5DG112100 Rh6AG159000 Rh6AG159100 Rh6AG312000 Rh6BG163200 Rh6BG318600 Rh6BG318900 Rh6CG154900 Rh6CG155000 Rh6DG149200 Rh6DG311200 Rh7CG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	3 cut(s)	157, 256, 269
AcoI	YGGCCR	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	3 cut(s)	157, 256, 269
AoxI	GGCC	2 cut(s)	153, 254
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	50
BccI	CCATC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	168, 239
BmgBI	CACGTC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	255, 263
BmrFI	CCNGG	2 cut(s)	168, 239
Bpu14I	TTCGAA	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	167, 257
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 191, 221
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	167, 257
BseGI	GGATG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	19, 22
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	155, 256
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	155, 256
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	137, 149, 261
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	155, 256
BspLI	GGNNCC	2 cut(s)	255, 263
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	157, 256, 269
BspT104I	TTCGAA	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	167, 257
BssMI	GATC	3 cut(s)	137, 149, 261
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	2 cut(s)	317, 345
BstACI	GRCGYC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	140, 152, 264
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	3 cut(s)	137, 149, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	166, 237
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	155, 256
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	76
CviAII	CATG	2 cut(s)	39, 71
CviJI	RGCY	3 cut(s)	155, 256, 317
CviKI_1	RGCY	3 cut(s)	155, 256, 317
DpnI	GATC	3 cut(s)	139, 151, 263
DpnII	GATC	3 cut(s)	137, 149, 261
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	317, 345
EarI	CTCTTC	2 cut(s)	317, 345
EcoRII	CCWGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	2 cut(s)	42, 74
FaiI	YATR	2 cut(s)	40, 72
FatI	CATG	2 cut(s)	38, 70
FokI	GGATG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	155, 256
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	42, 74
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	4 cut(s)	12, 61, 76, 214
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	97, 109, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	203
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	42, 74
Kzo9I	GATC	3 cut(s)	137, 149, 261
LmnI	GCTCC	2 cut(s)	53, 132
LpnPI	CCDG	4 cut(s)	83, 153, 180, 252
MaeII	ACGT	1 cut(s)	203
MalI	GATC	3 cut(s)	139, 151, 263
MboI	GATC	3 cut(s)	137, 149, 261
MboII	GAAGA	4 cut(s)	334, 362, 376, 392
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	2 cut(s)	29, 400
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	8 cut(s)	113, 165, 244, 252, 307, 318, 330, 346
MslI	CAYNNNNRTG	1 cut(s)	43
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	168, 239
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	3 cut(s)	137, 149, 261
NlaIII	CATG	2 cut(s)	42, 74
NlaIV	GGNNCC	2 cut(s)	255, 263
NmeAIII	GCCGAG	1 cut(s)	282
NspV	TTCGAA	1 cut(s)	398
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	255, 263
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	137, 149, 261
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	168, 239
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	4 cut(s)	102, 169, 176, 206
SfuI	TTCGAA	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	43
Sse9I	AATT	2 cut(s)	29, 400
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	166, 237
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	29, 400
TspDTI	ATGAA	4 cut(s)	43, 311, 377, 393
TspGWI	ACGGA	3 cut(s)	47, 212, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.