Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003059

Physical Location & Seq

Genomic Coordinates Reverse (-)

60550346 .. 60551344

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGCTCGATCTCTCTCTCTCTCTCCCCGTCTTCATCCGCACCTTCAAGGAGCACACCTACTGCGTCGACTCTGCCATCTTCGCCTCAGCCTTCGGCGACTATTCTTCACCCTTTGGGACGTTCTGGAACTTGGAATTAGAATTAGGTACTACACCTCTTCAAGCCCGCCGCCGAGATCACCAATTCCGATCCGCAAAACGACGGATGATGCGATGCTATAGCACTCTGTCACTTCTATATCTCGGTTTCCGGTGCTGCGGTGGGAAAGCAACTGCAAGGATCACGTTTTCAAGTGGTGGCGAGAGTGGGAAGAAGAAGAAGAAAAAGACCAGGTTTTGGTTGAAGAAGAAGAAGAAAGAAGTAGAGAGATCTAATGGTGTGGTGGAGGAGCAGAAGAAAAAGAGTGGGAGAAAAGTTGGTGTTTGCTTGAAGAAGAGGAAGACTGTACGTAGCTTCCAAATGTGGATTGTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.43

Weight (kDa)

10.42

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22180
rosa_chinensis	RchiOBHm_Chr2g0099721 RchiOBHm_Chr5g0014701 RchiOBHm_Chr6g0268151 RchiOBHm_Chr7g0195941
rosa_laevigata	RLG00000012942 RLG00000013929 RLG00000035083
rosa_multiflora	Rmu_co7982498.1_g000001 Rmu_sc0000120.1_g000021 Rmu_sc0000666.1_g000013 Rmu_sc0001839.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018670 Rroxscaffold_5G00357920 Rroxscaffold_7G00200000
rosa_rugosa	Rorug01G0481900 Rorug05G0020100 Rorug06G0026100 Rorug06G0039200 Rorug06G0200100 Rorug06G0200700
rosa_samantha	Rh5AG115800 Rh5AG441000 Rh5BG112500 Rh5CG124100 Rh5CG480200 Rh5DG112100 Rh6AG159000 Rh6AG159100 Rh6AG312000 Rh6BG163200 Rh6BG318600 Rh6BG318900 Rh6CG154900 Rh6CG155000 Rh6DG149200 Rh6DG311200 Rh7CG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	69
AciI	CCGC	5 cut(s)	40, 169, 172, 195, 261
AclWI	GGATC	2 cut(s)	186, 290
AfaI	GTAC	2 cut(s)	151, 450
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	49, 164, 294, 346, 433
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	2 cut(s)	7, 456
AluI	AGCT	2 cut(s)	7, 456
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	186, 290
ApeKI	GCWGC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	102, 173
BbsI	GAAGAC	3 cut(s)	25, 449, 466
Bbv12I	GWGCWC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	220
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	2 cut(s)	172, 259
BlsI	GCNGC	2 cut(s)	173, 260
Bme1390I	CCNGG	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	334
BmsI	GCATC	2 cut(s)	201, 206
BpiI	GAAGAC	3 cut(s)	25, 449, 466
Bpu10I	CCTNAGC	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	452
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	36, 213
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	5 cut(s)	10, 178, 191, 282, 371
BspACI	CCGC	5 cut(s)	40, 169, 172, 195, 261
BspCNI	CTCAG	1 cut(s)	101
BspPI	GGATC	2 cut(s)	186, 290
BssMI	GATC	5 cut(s)	10, 178, 191, 282, 371
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	165, 431
BstBAI	YACGTR	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	36, 213
BstKTI	GATC	5 cut(s)	13, 181, 194, 285, 374
BstMBI	GATC	5 cut(s)	10, 178, 191, 282, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	332
BstSFI	CTRYAG	1 cut(s)	220
BstSNI	TACGTA	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	3 cut(s)	25, 449, 466
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	36, 213
Cac8I	GCNNGC	1 cut(s)	169
CseI	GACGC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	150, 449
CviJI	RGCY	4 cut(s)	7, 92, 167, 456
CviKI_1	RGCY	4 cut(s)	7, 92, 167, 456
CviQI	GTAC	2 cut(s)	150, 449
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	5 cut(s)	12, 180, 193, 284, 373
DpnII	GATC	5 cut(s)	10, 178, 191, 282, 371
Eam1104I	CTCTTC	2 cut(s)	165, 431
EarI	CTCTTC	2 cut(s)	165, 431
Eco105I	TACGTA	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	332
FaiI	YATR	2 cut(s)	222, 241
FaqI	GGGAC	1 cut(s)	133
FauI	CCCGC	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	172, 259
FokI	GGATG	2 cut(s)	23, 220
Fsp4HI	GCNGC	2 cut(s)	172, 259
GluI	GCNGC	2 cut(s)	172, 259
HapII	CCGG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	2 cut(s)	102, 173
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	191, 479
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	2 cut(s)	71, 207
HpyAV	CCTTC	2 cut(s)	55, 103
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	3 cut(s)	122, 287, 451
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	3 cut(s)	122, 287, 451
Kzo9I	GATC	5 cut(s)	10, 178, 191, 282, 371
LmnI	GCTCC	2 cut(s)	52, 391
LpnPI	CCDG	4 cut(s)	112, 266, 319, 346
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	2 cut(s)	201, 206
MabI	ACCWGGT	1 cut(s)	332
MaeII	ACGT	3 cut(s)	122, 287, 451
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	5 cut(s)	12, 180, 193, 284, 373
MboI	GATC	5 cut(s)	10, 178, 191, 282, 371
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	137, 143, 185
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	97, 168, 382, 432
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	5 cut(s)	10, 178, 191, 282, 371
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	173, 260
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	371
RsaI	GTAC	2 cut(s)	151, 450
RsaNI	GTAC	2 cut(s)	150, 449
SalI	GTCGAC	1 cut(s)	68
SatI	GCNGC	2 cut(s)	172, 259
Sau3AI	GATC	5 cut(s)	10, 178, 191, 282, 371
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	57
SexAI	ACCWGGT	1 cut(s)	332
SfaNI	GCATC	2 cut(s)	201, 206
SfcI	CTRYAG	1 cut(s)	220
SnaBI	TACGTA	1 cut(s)	452
Sse9I	AATT	3 cut(s)	137, 143, 185
SsiI	CCGC	5 cut(s)	40, 169, 172, 195, 261
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	3 cut(s)	125, 290, 454
TaqI	TCGA	2 cut(s)	9, 69
TasI	AATT	3 cut(s)	137, 143, 185
TauI	GCSGC	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	231
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	2 cut(s)	17, 25
TspGWI	ACGGA	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.