Rh6BG318900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003059
Physical Location & Seq
Reverse (-)
55048301 .. 55048501
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG318900.1

Sequence Viewer

Length: 201 bp
ATGGTGTACACACACGTGGCTATCTGTGAGAGCATGAGGCTGTACCCGCCGGTTCCGACTGACAACAAAGAGGCGGTAGAAGACGACGTTTTGCCGGACGAGACTAAAGTGAAGAATGGGACGACAGTGACGTACCACGTGTACGTGATGGCGCGGATGGAGCAGATATGGGGCAAGGCCGAGTTCCGTCCCGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

66

Amino Acids

7.69

Weight (kDa)

5.21

Isoelectric Point (pI)

29.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 66 6.1e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AciI CCGC 3 cut(s) 47, 74, 154
AcvI CACGTG 2 cut(s) 16, 139
AfaI GTAC 4 cut(s) 8, 44, 134, 143
AflIII ACRYGT 2 cut(s) 13, 138
AleI CACNNNNGTG 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 191
BbrPI CACGTG 2 cut(s) 16, 139
BbsI GAAGAC 1 cut(s) 87
BccI CCATC 2 cut(s) 142, 151
BcoDI GTCTC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 87
BsaAI YACGTR 3 cut(s) 16, 139, 145
Bse118I RCCGGY 1 cut(s) 49
BseGI GGATG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 2 cut(s) 50, 95
BslFI GGGAC 2 cut(s) 133, 174
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 133, 174
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 191
Bsp1407I TGTACA 1 cut(s) 6
BspACI CCGC 3 cut(s) 47, 74, 154
BspANI GGCC 1 cut(s) 179
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 6
BstBAI YACGTR 3 cut(s) 16, 139, 145
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 95
BstMWI GCNNNNNNNGC 2 cut(s) 46, 160
BstUI CGCG 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 132
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 49
Csp6I GTAC 4 cut(s) 7, 43, 133, 142
CviAII CATG 1 cut(s) 34
CviJI RGCY 3 cut(s) 20, 40, 179
CviKI_1 RGCY 3 cut(s) 20, 40, 179
CviQI GTAC 4 cut(s) 7, 43, 133, 142
Eco72I CACGTG 2 cut(s) 16, 139
Eco88I CYCGRG 1 cut(s) 191
FaeI CATG 1 cut(s) 37
FaiI YATR 2 cut(s) 35, 169
FaqI GGGAC 2 cut(s) 133, 174
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 54
FokI GGATG 1 cut(s) 169
GlaI GCGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 50, 95
HhaI GCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HpaII CCGG 2 cut(s) 50, 95
Hpy166II GTNNAC 3 cut(s) 7, 9, 142
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 3 cut(s) 7, 9, 142
Hpy99I CGWCG 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 5 cut(s) 15, 87, 131, 138, 144
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 160
HpySE526I ACGT 5 cut(s) 15, 87, 131, 138, 144
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 2 cut(s) 63, 108
MaeII ACGT 5 cut(s) 15, 87, 131, 138, 144
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 2 cut(s) 92, 124
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 3 cut(s) 30, 64, 189
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 2 cut(s) 50, 95
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 46, 160
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 127
OliI CACNNNNGTG 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PmaCI CACGTG 2 cut(s) 16, 139
PmlI CACGTG 2 cut(s) 16, 139
Ppu21I YACGTR 3 cut(s) 16, 139, 145
PspCI CACGTG 2 cut(s) 16, 139
PspN4I GGNNCC 1 cut(s) 54
RsaI GTAC 4 cut(s) 8, 44, 134, 143
RsaNI GTAC 4 cut(s) 7, 43, 133, 142
RseI CAYNNNNRTG 1 cut(s) 14
SetI ASST 6 cut(s) 18, 90, 134, 141, 147, 200
SmiMI CAYNNNNRTG 1 cut(s) 14
SsiI CCGC 3 cut(s) 47, 74, 154
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 5 cut(s) 18, 90, 134, 141, 147
TatI WGTACW 1 cut(s) 6
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.