Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003059

Physical Location & Seq

Genomic Coordinates Reverse (-)

22791796 .. 22793901

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGGTTGTACCCGCCGGTTCCGACACACAACAAAGAGGCGGTAGATGGAGCAGATCCGGGGCAAGGATCGGCCGAGTTCCAACCCGAGAAGTGGTTGGAGTGTGGCGTGGCGACGGAGACGTGGTGGTTCGTGGCGAAGGACTCATTTATCTACCCGGTGTTTCGGGCGGGGCCGAGGATCTGTTTGGGGAAGGAGATGACATTTTTGCAGATGAAAAGGGTGTTGGTTGAGGTTTTGAGGAGGGTGGCGGAGAGGGGTTTATGGGAAGAGGAAGTGATGAAGATTGAGATGATGAAGAGAGGTTTTGTCGCAGCCTCGAAACCAGGTGTCGGAGATCGAAAAATTGTGGAGATTTCCGACGGAGATCCAATTTGGTGCCTTGCCACCGAGCTTGGCGAGACCACTCTCCCGACTTCTTCTCCGGTTCAAATTCGGAAGAATATCATTCGGTTTACCATGGAGATGGAGTTTATAAAGGCCTCGTCGGAGCTTGAGGACCATTGCGAGATCTTTGAACAGATTAAAGGTTTCCTCCCCGAAAGCTTCAATCCCTCTCCCGAGTCGACCCCGACTCAAATCTTGAAGAAGGATTCCTCCATTCAACTCCAGGACATCAATAATATTGGTGACCAACCTAATTCGTATGAGATTTTCAGTTCAAATTTACGCTTGATCCTTTGTTTGGCGACGCGGTGCAGCCGACAACTGGTTGGCAACATGTCGACGGTCTTTGGAGGAAGTGTGGAGGAGAAGGGTGGCGATGAGTGGCTCGCGGAGCAATTCGGATGGTTTTACTATTGGGAAGTCAAGAGAGTGGAGGATTGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

p450

Protein Analysis

277

Amino Acids

31.63

Weight (kDa)

4.91

Isoelectric Point (pI)

58.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22180
rosa_chinensis	RchiOBHm_Chr2g0099721 RchiOBHm_Chr5g0014701 RchiOBHm_Chr6g0268151 RchiOBHm_Chr7g0195941
rosa_laevigata	RLG00000012942 RLG00000013929 RLG00000035083
rosa_multiflora	Rmu_co7982498.1_g000001 Rmu_sc0000120.1_g000021 Rmu_sc0000666.1_g000013 Rmu_sc0001839.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018670 Rroxscaffold_5G00357920 Rroxscaffold_7G00200000
rosa_rugosa	Rorug01G0481900 Rorug05G0020100 Rorug06G0026100 Rorug06G0039200 Rorug06G0200100 Rorug06G0200700
rosa_samantha	Rh5AG115800 Rh5AG441000 Rh5BG112500 Rh5CG124100 Rh5CG480200 Rh5DG112100 Rh6AG159000 Rh6AG159100 Rh6AG312000 Rh6BG163200 Rh6BG318600 Rh6BG318900 Rh6CG154900 Rh6CG155000 Rh6DG149200 Rh6DG311200 Rh7CG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	378
AccI	GTMKAC	2 cut(s)	566, 725
AccII	CGCG	2 cut(s)	694, 776
AciI	CCGC	6 cut(s)	14, 41, 170, 251, 694, 776
AclWI	GGATC	5 cut(s)	50, 76, 188, 362, 670
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	432, 664
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	5 cut(s)	65, 93, 332, 685, 709
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	6 cut(s)	431, 518, 550, 586, 605, 663
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	2 cut(s)	325, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	3 cut(s)	394, 493, 546
AluI	AGCT	3 cut(s)	394, 493, 546
Alw26I	GTCTC	2 cut(s)	113, 395
AlwI	GGATC	5 cut(s)	50, 76, 188, 362, 670
Ama87I	CYCGRG	2 cut(s)	86, 560
AoxI	GGCC	3 cut(s)	72, 173, 480
ApeKI	GCWGC	2 cut(s)	314, 699
ApoI	RAATTY	2 cut(s)	432, 664
AspS9I	GGNCC	2 cut(s)	173, 499
AsuC2I	CCSGG	2 cut(s)	60, 158
AsuHPI	GGTGA	1 cut(s)	641
AvaI	CYCGRG	2 cut(s)	86, 560
AvaII	GGWCC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	326, 711
BccI	CCATC	3 cut(s)	41, 460, 783
BciT130I	CCWGG	2 cut(s)	327, 611
BcnI	CCSGG	2 cut(s)	60, 158
BcoDI	GTCTC	2 cut(s)	113, 395
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	2 cut(s)	315, 700
BlsI	GCNGC	2 cut(s)	316, 701
Bme1390I	CCNGG	4 cut(s)	60, 158, 327, 611
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	2 cut(s)	86, 560
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	173, 499
BmiI	GGNNCC	3 cut(s)	21, 174, 380
BmrFI	CCNGG	4 cut(s)	60, 158, 327, 611
BpmI	CTGGAG	1 cut(s)	593
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	2 cut(s)	60, 158
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	59, 176, 459
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	8 cut(s)	110, 140, 406, 436, 455, 485, 729, 759
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 93, 332, 685, 709
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	327, 611
BseDI	CCNNGG	3 cut(s)	59, 176, 459
BseGI	GGATG	1 cut(s)	794
BseLI	CCNNNNNNNGG	5 cut(s)	65, 93, 332, 685, 709
BseMI	GCAATG	1 cut(s)	502
BseNI	ACTGG	1 cut(s)	714
BseRI	GAGGAG	2 cut(s)	256, 764
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	326, 711
BsgI	GTGCAG	1 cut(s)	718
Bsh1236I	CGCG	2 cut(s)	694, 776
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	74, 175, 482
BshNI	GGYRCC	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	75
BsiHKCI	CYCGRG	2 cut(s)	86, 560
BsiSI	CCGG	4 cut(s)	17, 59, 158, 425
BslI	CCNNNNNNNGG	5 cut(s)	65, 93, 332, 685, 709
BsmAI	GTCTC	2 cut(s)	113, 395
BsmBI	CGTCTC	1 cut(s)	113
BsnI	GGCC	3 cut(s)	74, 175, 482
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	2 cut(s)	86, 560
Bsp143I	GATC	7 cut(s)	55, 68, 180, 337, 367, 510, 675
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	6 cut(s)	14, 41, 170, 251, 694, 776
BspANI	GGCC	3 cut(s)	74, 175, 482
BspFNI	CGCG	2 cut(s)	694, 776
BspLI	GGNNCC	3 cut(s)	21, 174, 380
BspPI	GGATC	5 cut(s)	50, 76, 188, 362, 670
BspT107I	GGYRCC	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	714
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	59, 176, 459
BssMI	GATC	7 cut(s)	55, 68, 180, 337, 367, 510, 675
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	327, 611
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	2 cut(s)	264, 293
BstC8I	GCNNGC	1 cut(s)	774
BstDSI	CCRYGG	1 cut(s)	459
BstEII	GGTNACC	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	794
BstFNI	CGCG	2 cut(s)	694, 776
BstKTI	GATC	7 cut(s)	58, 71, 183, 340, 370, 513, 678
BstMAI	GTCTC	2 cut(s)	113, 395
BstMBI	GATC	7 cut(s)	55, 68, 180, 337, 367, 510, 675
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	778
BstNI	CCWGG	2 cut(s)	327, 611
BstNSI	RCATGY	1 cut(s)	724
BstPI	GGTNACC	1 cut(s)	629
BstSCI	CCNGG	4 cut(s)	58, 156, 325, 609
BstUI	CGCG	2 cut(s)	694, 776
BstV1I	GCAGC	2 cut(s)	326, 711
BstX2I	RGATCY	4 cut(s)	55, 180, 367, 510
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	4 cut(s)	55, 180, 367, 510
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	74, 175, 482
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	777
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	794
Cac8I	GCNNGC	1 cut(s)	774
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	173, 499
CseI	GACGC	1 cut(s)	700
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	2 cut(s)	460, 721
CviJI	RGCY	9 cut(s)	74, 175, 317, 394, 482, 493, 546, 702, 772
CviKI_1	RGCY	9 cut(s)	74, 175, 317, 394, 482, 493, 546, 702, 772
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	7 cut(s)	57, 70, 182, 339, 369, 512, 677
DpnII	GATC	7 cut(s)	55, 68, 180, 337, 367, 510, 675
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	264, 293
EarI	CTCTTC	2 cut(s)	264, 293
EciI	GGCGGA	1 cut(s)	266
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	482
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	499
Eco52I	CGGCCG	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	86, 560
Eco91I	GGTNACC	1 cut(s)	629
EcoO65I	GGTNACC	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	325, 609
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	463, 724
FaiI	YATR	5 cut(s)	265, 461, 476, 648, 722
FatI	CATG	2 cut(s)	459, 720
FauI	CCCGC	2 cut(s)	21, 163
FblI	GTMKAC	2 cut(s)	566, 725
Fnu4HI	GCNGC	2 cut(s)	315, 700
FokI	GGATG	1 cut(s)	801
Fsp4HI	GCNGC	2 cut(s)	315, 700
GluI	GCNGC	2 cut(s)	315, 700
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	3 cut(s)	74, 175, 482
HapII	CCGG	4 cut(s)	17, 59, 158, 425
HgaI	GACGC	1 cut(s)	700
Hin1II	CATG	2 cut(s)	463, 724
HincII	GTYRAC	2 cut(s)	567, 726
HindII	GTYRAC	2 cut(s)	567, 726
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	4 cut(s)	143, 563, 574, 593
HpaII	CCGG	4 cut(s)	17, 59, 158, 425
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	3 cut(s)	456, 567, 726
Hpy188I	TCNGA	6 cut(s)	24, 335, 361, 438, 490, 788
Hpy188III	TCNNGA	4 cut(s)	412, 560, 583, 811
Hpy8I	GTNNAC	3 cut(s)	456, 567, 726
Hpy99I	CGWCG	5 cut(s)	118, 365, 490, 694, 730
HpyAV	CCTTC	4 cut(s)	133, 187, 583, 748
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	211, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	778
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	463, 724
Kzo9I	GATC	7 cut(s)	55, 68, 180, 337, 367, 510, 675
LmnI	GCTCC	3 cut(s)	50, 490, 778
LpnPI	CCDG	9 cut(s)	30, 72, 171, 312, 339, 438, 596, 623, 695
Lsp1109I	GCAGC	2 cut(s)	326, 711
MabI	ACCWGGT	1 cut(s)	325
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	7 cut(s)	57, 70, 182, 339, 369, 512, 677
MboI	GATC	7 cut(s)	55, 68, 180, 337, 367, 510, 675
MboII	GAAGA	6 cut(s)	281, 295, 310, 411, 451, 598
MflI	RGATCY	4 cut(s)	55, 180, 367, 510
MluCI	AATT	6 cut(s)	345, 372, 432, 640, 664, 782
MlyI	GAGTC	3 cut(s)	137, 568, 572
MmeI	TCCRAC	6 cut(s)	47, 78, 106, 313, 384, 468
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	4 cut(s)	17, 59, 158, 425
MspR9I	CCNGG	4 cut(s)	60, 158, 327, 611
MvaI	CCWGG	2 cut(s)	327, 611
MvnI	CGCG	2 cut(s)	694, 776
MwoI	GCNNNNNNNGC	1 cut(s)	778
NciI	CCSGG	2 cut(s)	60, 158
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	7 cut(s)	55, 68, 180, 337, 367, 510, 675
NlaIII	CATG	2 cut(s)	463, 724
NlaIV	GGNNCC	3 cut(s)	21, 174, 380
NmeAIII	GCCGAG	2 cut(s)	100, 201
NmuCI	GTSAC	1 cut(s)	629
NspI	RCATGY	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	482
PciI	ACATGT	1 cut(s)	720
PfeI	GAWTC	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	609
PkrI	GCNGC	2 cut(s)	316, 701
PleI	GAGTC	3 cut(s)	137, 568, 571
PpsI	GAGTC	3 cut(s)	137, 568, 571
PscI	ACATGT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	325, 609
PspEI	GGTNACC	1 cut(s)	629
PspGI	CCWGG	2 cut(s)	325, 609
PspN4I	GGNNCC	3 cut(s)	21, 174, 380
PspPI	GGNCC	2 cut(s)	173, 499
PsuI	RGATCY	4 cut(s)	55, 180, 367, 510
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	464
SalI	GTCGAC	2 cut(s)	565, 724
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	315, 700
Sau3AI	GATC	7 cut(s)	55, 68, 180, 337, 367, 510, 675
Sau96I	GGNCC	2 cut(s)	173, 499
SchI	GAGTC	3 cut(s)	137, 568, 572
ScrFI	CCNGG	4 cut(s)	60, 158, 327, 611
SexAI	ACCWGGT	1 cut(s)	325
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	6 cut(s)	345, 372, 432, 640, 664, 782
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	6 cut(s)	14, 41, 170, 251, 694, 776
SspI	AATATT	1 cut(s)	625
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	4 cut(s)	58, 156, 325, 609
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	730
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	4 cut(s)	320, 340, 566, 725
TasI	AATT	6 cut(s)	345, 372, 432, 640, 664, 782
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	2 cut(s)	314, 699
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	3 cut(s)	230, 296, 311
TspGWI	ACGGA	2 cut(s)	131, 378
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	2 cut(s)	432, 664
XceI	RCATGY	1 cut(s)	724
XmiI	GTMKAC	2 cut(s)	566, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.