Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7982498.1

Orthogroup ID

OG0003059

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 279

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7982498.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ttggtgggaaattcaaacgtccccgcctcatacggcggcgtttcgtcctccgattccgtctccggcgctctcagctctcgcgcatttccgagacggttgacggtcttcgccaaccgcacgatgacggagaagcagttgatcgtggtcgttgaaggcacggcggccatcgggccttactggtcagccgtcgtctccgattacgtcgagaagatcatcaggtcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med25_VWA

Protein Analysis

74

Amino Acids

7.82

Weight (kDa)

9.4

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22180
rosa_chinensis	RchiOBHm_Chr2g0099721 RchiOBHm_Chr5g0014701 RchiOBHm_Chr6g0268151 RchiOBHm_Chr7g0195941
rosa_laevigata	RLG00000012942 RLG00000013929 RLG00000035083
rosa_multiflora	Rmu_co7982498.1_g000001 Rmu_sc0000120.1_g000021 Rmu_sc0000666.1_g000013 Rmu_sc0001839.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018670 Rroxscaffold_5G00357920 Rroxscaffold_7G00200000
rosa_rugosa	Rorug01G0481900 Rorug05G0020100 Rorug06G0026100 Rorug06G0039200 Rorug06G0200100 Rorug06G0200700
rosa_samantha	Rh5AG115800 Rh5AG441000 Rh5BG112500 Rh5CG124100 Rh5CG480200 Rh5DG112100 Rh6AG159000 Rh6AG159100 Rh6AG312000 Rh6BG163200 Rh6BG318600 Rh6BG318900 Rh6CG154900 Rh6CG155000 Rh6DG149200 Rh6DG311200 Rh7CG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AciI	CCGC	4 cut(s)	24, 36, 115, 161
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	15, 152
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw26I	GTCTC	3 cut(s)	64, 85, 196
AoxI	GGCC	2 cut(s)	162, 170
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	68, 83
AspS9I	GGNCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	97
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	3 cut(s)	49, 170, 174
BcoDI	GTCTC	3 cut(s)	64, 85, 196
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	2 cut(s)	37, 162
BlsI	GCNGC	2 cut(s)	38, 163
BmgT120I	GGNCC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bse1I	ACTGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	164, 172
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	5
BsmAI	GTCTC	3 cut(s)	64, 85, 196
BsmBI	CGTCTC	3 cut(s)	64, 85, 196
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	164, 172
Bsp143I	GATC	2 cut(s)	138, 210
BspACI	CCGC	4 cut(s)	24, 36, 115, 161
BspANI	GGCC	2 cut(s)	164, 172
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	182
BssMI	GATC	2 cut(s)	138, 210
Bst4CI	ACNGT	2 cut(s)	96, 103
BstDEI	CTNAG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 83
BstKTI	GATC	2 cut(s)	141, 213
BstMAI	GTCTC	3 cut(s)	64, 85, 196
BstMBI	GATC	2 cut(s)	138, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstUI	CGCG	1 cut(s)	81
BstV2I	GAAGAC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	164, 172
CfoI	GCGC	2 cut(s)	68, 83
Cfr13I	GGNCC	1 cut(s)	170
CviJI	RGCY	4 cut(s)	75, 164, 172, 185
CviKI_1	RGCY	4 cut(s)	75, 164, 172, 185
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	140, 212
DpnII	GATC	2 cut(s)	138, 210
EaeI	YGGCCR	1 cut(s)	162
Esp3I	CGTCTC	3 cut(s)	64, 85, 196
FaiI	YATR	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	5
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	37, 162
Fsp4HI	GCNGC	2 cut(s)	37, 162
GlaI	GCGC	2 cut(s)	67, 82
GluI	GCNGC	2 cut(s)	37, 162
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	164, 172
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	2 cut(s)	68, 83
Hin6I	GCGC	2 cut(s)	66, 81
HinP1I	GCGC	2 cut(s)	66, 81
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	52, 90, 196
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	2 cut(s)	191, 206
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	96, 103
HpyCH4IV	ACGT	2 cut(s)	18, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	18, 201
HspAI	GCGC	2 cut(s)	66, 81
Kzo9I	GATC	2 cut(s)	138, 210
LpnPI	CCDG	3 cut(s)	76, 163, 202
MaeII	ACGT	2 cut(s)	18, 201
MalI	GATC	2 cut(s)	140, 212
MboI	GATC	2 cut(s)	138, 210
MboII	GAAGA	2 cut(s)	97, 220
MluCI	AATT	1 cut(s)	10
MnlI	CCTC	2 cut(s)	37, 58
MspI	CCGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	2 cut(s)	138, 210
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	38, 163
PspPI	GGNCC	1 cut(s)	170
SatI	GCNGC	2 cut(s)	37, 162
Sau3AI	GATC	2 cut(s)	138, 210
Sau96I	GGNCC	1 cut(s)	170
SetI	ASST	4 cut(s)	21, 77, 204, 221
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	4 cut(s)	24, 36, 115, 161
TaaI	ACNGT	2 cut(s)	96, 103
TaiI	ACGT	2 cut(s)	21, 204
TaqI	TCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	10
TauI	GCSGC	2 cut(s)	39, 164
TfiI	GAWTC	1 cut(s)	53
TspGWI	ACGGA	2 cut(s)	46, 140
XapI	RAATTY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.