Rorug05G0020100

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003059
Physical Location & Seq
Reverse (-)
1331903 .. 1332664
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0020100.1

Sequence Viewer

Length: 318 bp
ATGCTTGCATTTTCGGCTTCAATAGCTTTGAAGAAGGCAGTGATGAAGTGCCTGGATGCGTTCAAGGGAAGAGATTGGCTCAATGCAGAGAATATCGTTTTGGGATTGCTCTTCCTTGTGAACTTTGTTAGGATGATCCAGACGCCTAGCAACTGTCTTGATTTACTTTTCAGTGGTGTACTCATACTCCTTGTAAGAGTCATTCATGCTGCAGAAGCCAAGTCCCTTTCTGAAAATAATGGTCTTCTTGACGAAAATCAAATCTTAAAAGAACCGGTTGCAGTCATTGGACACAGAACTCGACAAGCTAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

105

Amino Acids

11.63

Weight (kDa)

9.18

Isoelectric Point (pI)

24.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 1 cut(s) 180
AgeI ACCGGT 1 cut(s) 274
AgsI TTSAA 3 cut(s) 21, 31, 64
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 2 cut(s) 26, 308
AluI AGCT 2 cut(s) 26, 308
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 209
AsiGI ACCGGT 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 53
BfaI CTAG 2 cut(s) 147, 309
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BsaHI GRCGYC 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bse118I RCCGGY 1 cut(s) 274
BseBI CCWGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 61, 138
BseXI GCAGC 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 274
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 135
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 274
BssMI GATC 1 cut(s) 135
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 2 cut(s) 64, 116
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 2 cut(s) 61, 138
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 215
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 61, 138
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 178
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 274
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 179
CspAI ACCGGT 1 cut(s) 274
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 17, 26, 79, 218, 308
CviKI_1 RGCY 5 cut(s) 17, 26, 79, 218, 308
CviQI GTAC 1 cut(s) 179
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 64, 116
EarI CTCTTC 2 cut(s) 64, 116
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 185, 207
FaqI GGGAC 1 cut(s) 208
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 68, 145
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 147, 309
GluI GCNGC 1 cut(s) 210
HapII CCGG 1 cut(s) 275
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 1 cut(s) 209
HinfI GANTC 2 cut(s) 198, 312
HpaII CCGG 1 cut(s) 275
Hpy166II GTNNAC 2 cut(s) 121, 179
Hpy188I TCNGA 2 cut(s) 232, 317
Hpy188III TCNNGA 3 cut(s) 139, 158, 248
Hpy8I GTNNAC 2 cut(s) 121, 179
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 4 cut(s) 8, 86, 212, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 215
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 135
LguI GCTCTTC 1 cut(s) 116
LpnPI CCDG 4 cut(s) 38, 65, 152, 288
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 147, 309
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 4 cut(s) 43, 81, 103, 236
MlyI GAGTC 1 cut(s) 207
MseI TTAA 1 cut(s) 266
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 215
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 312
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PstI CTGCAG 1 cut(s) 214
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 135
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 53
SetI ASST 2 cut(s) 28, 310
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 210
SspMI CTAG 2 cut(s) 147, 309
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 301
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 2 cut(s) 45, 178
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 59, 194
TspRI CASTG 2 cut(s) 45, 178
XspI CTAG 2 cut(s) 147, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.