Rh6BG318600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003059
Physical Location & Seq
Reverse (-)
55031276 .. 55033338
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG318600.1

Sequence Viewer

Length: 852 bp
ATGCGCCCGGTGTGGAAGATCAAACGAGCTCTCGAAATCGGATCGGAAAGCCATCTCCGCCGTGTGGTCTCCGACGTCCGAGAGTTTGCGAACACCATCGTCAAGCAAAAGAAGCGTGAAATGGACGAGAAGAAGACTCTGGAGTCTCACGATCTACTGTCTAGATTCTTGAGCTCCGGCCACTCCGACGAGAAATTCGTCACTGACATAGTCATTAGCTTCATCCTCGCTGGAAGGGACACGACCTCGGCTGCTTTGACCTGGTTCTTTTGGCTAATCTCAAAACATCCAAACGTCGAAAGCCAAATTCTCAAGGAGATCAATGAGAAAATGGAGACCGGAGTCGGATATGATGAAGCGAAGGAGATGGTGTACACACACGCGGCGCTTTGTGAGAGCATGAGGCTGTACCCGCCTGTTCCGACGGACAGCAAAGAGGTGGTAGAAGATGACGTTTTGCCGGACGGGACTAAAGTGAAGAAGGGGACGGAAGTGACGTACCACGTGTACGCAATGGGGCGGATGGAGCATATATGGGGCAAGGATTGCGCCGAGTTCCTCCCCGAGAGGTGGTTGGAGCGTGACGTGGCGACGGAGAAGTGGAGGTTCGTGGCGAAGGACTCCTTTAGCTACCCGGTGTTTCAAGCGGGGCCGAGGATCTGTTTGGGGAAGGAGATGGCCTTTTTGCAGATGAAAAGGGTGGTGGGTGAGGTTTTGAAGAGGTTTAAAGTTGTGCCGGAGAAGAGGGAGAATGGAAAGGAGCCAGAGTTTCTTGCCTACCTCACTGGAAAAATGAAAGGTGGGTTTCCAGTGACCGTTGTTGTGAGAGCTTGCGTATTGGACTATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

283

Amino Acids

32.6

Weight (kDa)

8.2

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 17 - 251 1.7e-48 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 142
AatII GACGTC 1 cut(s) 78
AccII CGCG 1 cut(s) 383
AciI CCGC 5 cut(s) 58, 383, 413, 520, 647
AclWI GGATC 2 cut(s) 49, 665
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 2 cut(s) 194, 306
AcvI CACGTG 1 cut(s) 505
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 4 cut(s) 374, 410, 500, 509
AfiI CCNNNNNNNGG 2 cut(s) 64, 570
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 2 cut(s) 644, 718
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 5 cut(s) 29, 174, 219, 630, 830
AluI AGCT 5 cut(s) 29, 174, 219, 630, 830
Alw21I GWGCWC 2 cut(s) 31, 176
Alw26I GTCTC 3 cut(s) 73, 150, 329
AlwI GGATC 2 cut(s) 49, 665
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 3 cut(s) 178, 650, 678
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 2 cut(s) 194, 306
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspLEI GCGC 3 cut(s) 6, 388, 551
AspS9I GGNCC 1 cut(s) 650
AsuC2I CCSGG 2 cut(s) 8, 635
AsuHPI GGTGA 1 cut(s) 719
AvaI CYCGRG 1 cut(s) 563
BanII GRGCYC 2 cut(s) 31, 176
BbrPI CACGTG 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 2 cut(s) 31, 176
BbvI GCAGC 1 cut(s) 238
BccI CCATC 5 cut(s) 60, 104, 361, 517, 670
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 262
BcnI CCSGG 2 cut(s) 8, 635
BcoDI GTCTC 3 cut(s) 73, 150, 329
BfaI CTAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 389
BisI GCNGC 2 cut(s) 252, 384
BlsI GCNGC 2 cut(s) 253, 385
Bme1390I CCNGG 3 cut(s) 8, 262, 635
BmeT110I CYCGRG 1 cut(s) 563
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 2 cut(s) 651, 762
BmrFI CCNGG 3 cut(s) 8, 262, 635
BoxI GACNNNNGTC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 161
BpuEI CTTGAG 2 cut(s) 190, 296
BpuMI CCSGG 2 cut(s) 8, 635
BsaAI YACGTR 1 cut(s) 505
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 73, 329
BsaJI CCNNGG 2 cut(s) 246, 653
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 4 cut(s) 356, 386, 752, 782
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 570
Bse1I ACTGG 2 cut(s) 790, 809
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 246, 653
BseGI GGATG 3 cut(s) 222, 286, 528
BseLI CCNNNNNNNGG 2 cut(s) 64, 570
BseMI GCAATG 1 cut(s) 519
BseNI ACTGG 2 cut(s) 790, 809
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 3 cut(s) 180, 652, 680
BsiHKAI GWGCWC 2 cut(s) 31, 176
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 6 cut(s) 8, 177, 339, 461, 635, 737
BslFI GGGAC 3 cut(s) 251, 481, 499
BslI CCNNNNNNNGG 2 cut(s) 64, 570
BsmAI GTCTC 3 cut(s) 73, 150, 329
BsmFI GGGAC 3 cut(s) 251, 481, 499
BsnI GGCC 3 cut(s) 180, 652, 680
Bso31I GGTCTC 2 cut(s) 73, 329
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 31, 176
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 5 cut(s) 18, 41, 151, 318, 657
BspACI CCGC 5 cut(s) 58, 383, 413, 520, 647
BspANI GGCC 3 cut(s) 180, 652, 680
BspFNI CGCG 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 651, 762
BspPI GGATC 2 cut(s) 49, 665
BspTNI GGTCTC 2 cut(s) 73, 329
BsrDI GCAATG 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 2 cut(s) 790, 809
BssECI CCNNGG 2 cut(s) 246, 653
BssMI GATC 5 cut(s) 18, 41, 151, 318, 657
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 2 cut(s) 159, 817
Bst6I CTCTTC 2 cut(s) 713, 737
BstACI GRCGYC 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 546
BstAUI TGTACA 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 832
BstF5I GGATG 3 cut(s) 222, 286, 528
BstFNI CGCG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 3 cut(s) 6, 388, 551
BstKTI GATC 5 cut(s) 21, 44, 154, 321, 660
BstMAI GTCTC 3 cut(s) 73, 150, 329
BstMBI GATC 5 cut(s) 18, 41, 151, 318, 657
BstMWI GCNNNNNNNGC 5 cut(s) 57, 112, 412, 526, 546
BstNI CCWGG 1 cut(s) 262
BstPAI GACNNNNGTC 1 cut(s) 341
BstSCI CCNGG 3 cut(s) 6, 260, 633
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
BsuRI GGCC 3 cut(s) 180, 652, 680
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 222, 286, 528
BtsIMutI CAGTG 3 cut(s) 201, 783, 816
Cac8I GCNNGC 1 cut(s) 832
CfoI GCGC 3 cut(s) 6, 388, 551
Cfr13I GGNCC 1 cut(s) 650
CsiI ACCWGGT 1 cut(s) 260
Csp6I GTAC 4 cut(s) 373, 409, 499, 508
CviAII CATG 1 cut(s) 400
CviQI GTAC 4 cut(s) 373, 409, 499, 508
DpnI GATC 5 cut(s) 20, 43, 153, 320, 659
DpnII GATC 5 cut(s) 18, 41, 151, 318, 657
DraI TTTAAA 1 cut(s) 727
DrdI GACNNNNNNGTC 1 cut(s) 142
DseDI GACNNNNNNGTC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 713, 737
EarI CTCTTC 2 cut(s) 713, 737
EciI GGCGGA 2 cut(s) 47, 535
Ecl136II GAGCTC 2 cut(s) 29, 174
Eco24I GRGCYC 2 cut(s) 31, 176
Eco31I GGTCTC 2 cut(s) 73, 329
Eco53kI GAGCTC 2 cut(s) 29, 174
Eco72I CACGTG 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 563
EcoICRI GAGCTC 2 cut(s) 29, 174
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 2 cut(s) 31, 176
FaeI CATG 1 cut(s) 403
FaiI YATR 7 cut(s) 209, 351, 401, 531, 533, 535, 850
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 3 cut(s) 251, 481, 499
FatI CATG 1 cut(s) 399
FauI CCCGC 2 cut(s) 420, 640
Fnu4HI GCNGC 2 cut(s) 252, 384
FokI GGATG 3 cut(s) 209, 273, 535
FriOI GRGCYC 2 cut(s) 31, 176
Fsp4HI GCNGC 2 cut(s) 252, 384
FspBI CTAG 1 cut(s) 162
GlaI GCGC 3 cut(s) 5, 387, 550
GluI GCNGC 2 cut(s) 252, 384
GsuI CTGGAG 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 3 cut(s) 180, 652, 680
HapII CCGG 6 cut(s) 8, 177, 339, 461, 635, 737
HhaI GCGC 3 cut(s) 6, 388, 551
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 403
Hin6I GCGC 3 cut(s) 4, 386, 549
HinP1I GCGC 3 cut(s) 4, 386, 549
HinfI GANTC 5 cut(s) 136, 143, 165, 342, 620
HpaII CCGG 6 cut(s) 8, 177, 339, 461, 635, 737
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 3 cut(s) 373, 375, 508
Hpy188I TCNGA 7 cut(s) 41, 46, 73, 80, 187, 347, 423
Hpy188III TCNNGA 5 cut(s) 32, 140, 149, 162, 169
Hpy8I GTNNAC 3 cut(s) 373, 375, 508
Hpy99I CGWCG 5 cut(s) 77, 191, 299, 427, 595
HpyAV CCTTC 5 cut(s) 228, 355, 475, 610, 664
HpyCH4III ACNGT 2 cut(s) 159, 817
HpyCH4IV ACGT 6 cut(s) 75, 294, 453, 497, 504, 585
HpyCH4V TGCA 1 cut(s) 688
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 112, 412, 526, 546
HpySE526I ACGT 6 cut(s) 75, 294, 453, 497, 504, 585
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 403
HspAI GCGC 3 cut(s) 4, 386, 549
Kzo9I GATC 5 cut(s) 18, 41, 151, 318, 657
LmnI GCTCC 4 cut(s) 179, 526, 577, 760
Lsp1109I GCAGC 1 cut(s) 238
MabI ACCWGGT 1 cut(s) 260
MaeI CTAG 1 cut(s) 162
MaeII ACGT 6 cut(s) 75, 294, 453, 497, 504, 585
MaeIII GTNAC 4 cut(s) 199, 493, 581, 811
MalI GATC 5 cut(s) 20, 43, 153, 320, 659
MboI GATC 5 cut(s) 18, 41, 151, 318, 657
MboII GAAGA 7 cut(s) 28, 142, 145, 458, 490, 730, 754
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 31, 176
MluCI AATT 2 cut(s) 194, 306
MlyI GAGTC 4 cut(s) 130, 152, 351, 614
MmeI TCCRAC 5 cut(s) 96, 210, 325, 446, 555
MseI TTAA 1 cut(s) 726
MspI CCGG 6 cut(s) 8, 177, 339, 461, 635, 737
MspR9I CCNGG 3 cut(s) 8, 262, 635
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 5 cut(s) 57, 112, 412, 526, 546
NciI CCSGG 2 cut(s) 8, 635
NdeII GATC 5 cut(s) 18, 41, 151, 318, 657
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 2 cut(s) 651, 762
NmeAIII GCCGAG 3 cut(s) 227, 577, 678
NmuCI GTSAC 4 cut(s) 199, 493, 581, 811
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 494
PfeI GAWTC 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 2 cut(s) 253, 385
PleI GAGTC 4 cut(s) 130, 151, 350, 614
PmaCI CACGTG 1 cut(s) 505
PmlI CACGTG 1 cut(s) 505
PpsI GAGTC 4 cut(s) 130, 151, 350, 614
Ppu21I YACGTR 1 cut(s) 505
PshAI GACNNNNGTC 1 cut(s) 341
Psp124BI GAGCTC 2 cut(s) 31, 176
Psp6I CCWGG 1 cut(s) 260
PspCI CACGTG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 651, 762
PspPI GGNCC 1 cut(s) 650
PsuI RGATCY 1 cut(s) 657
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 4 cut(s) 374, 410, 500, 509
RsaNI GTAC 4 cut(s) 373, 409, 499, 508
SacI GAGCTC 2 cut(s) 31, 176
SaqAI TTAA 1 cut(s) 726
SatI GCNGC 2 cut(s) 252, 384
Sau3AI GATC 5 cut(s) 18, 41, 151, 318, 657
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 4 cut(s) 130, 152, 351, 614
ScrFI CCNGG 3 cut(s) 8, 262, 635
SduI GDGCHC 2 cut(s) 31, 176
SexAI ACCWGGT 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 169, 311
SmoI CTYRAG 2 cut(s) 169, 311
Sse9I AATT 2 cut(s) 194, 306
SsiI CCGC 5 cut(s) 58, 383, 413, 520, 647
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 2 cut(s) 31, 176
StyD4I CCNGG 3 cut(s) 6, 260, 633
TaaI ACNGT 2 cut(s) 159, 817
TaiI ACGT 6 cut(s) 78, 297, 456, 500, 507, 588
TaqI TCGA 2 cut(s) 33, 297
TasI AATT 2 cut(s) 194, 306
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TscAI CASTG 3 cut(s) 208, 790, 816
TseFI GTSAC 4 cut(s) 199, 493, 581, 811
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 4 cut(s) 199, 493, 581, 811
TspDTI ATGAA 4 cut(s) 211, 369, 707, 809
TspGWI ACGGA 3 cut(s) 440, 503, 608
TspRI CASTG 3 cut(s) 208, 790, 816
Tth111I GACNNNGTC 1 cut(s) 209
XapI RAATTY 2 cut(s) 194, 306
XbaI TCTAGA 1 cut(s) 161
XspI CTAG 1 cut(s) 162
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.