RchiOBHm_Chr2g0099721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003059
Physical Location & Seq
Forward (+)
11866645 .. 11867522
878 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47444

Sequence Viewer

Length: 303 bp
ATGATCTCCTTACCAACCGGTACTGCACCTCTTCAAGGCTGCCGCCGAGATCACCGACTCCGATCCGTAAAACGACGGACGATGCGACGCCGCAGCGCTCCGTCGCTTATGTTTCTCGGTCTCCGGTGTTGCGGTGGGAAAGCAACTGCGAGGATCACATTTTCAAGTGATGGCGGGAGTGGGAAGAAGAAGAAAAAGACCAGGTTTTGGTTGAAGAAGAAGAAGAAGAAGGGAGTAGAGAGATCTAATGGTGTGGTGAGGAGCAGAAGAAAAAGAGTGGGAGAAGATTTGGTGTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.32

Weight (kDa)

11.96

Isoelectric Point (pI)

78.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 4 cut(s) 43, 91, 132, 174
AclWI GGATC 2 cut(s) 57, 161
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 1 cut(s) 22
AfeI AGCGCT 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 35, 207
AgeI ACCGGT 1 cut(s) 17
AgsI TTSAA 3 cut(s) 35, 165, 214
AjnI CCWGG 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 57, 161
Aor51HI AGCGCT 1 cut(s) 97
ApeKI GCWGC 2 cut(s) 39, 93
AsiGI ACCGGT 1 cut(s) 17
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 44, 268
BbvI GCAGC 2 cut(s) 26, 105
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 99
BglII AGATCT 1 cut(s) 242
BisI GCNGC 4 cut(s) 40, 43, 91, 94
BlsI GCNGC 4 cut(s) 41, 44, 92, 95
Bme1390I CCNGG 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 125
BsaWI WCCGGW 2 cut(s) 17, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 207
Bse118I RCCGGY 1 cut(s) 17
BseBI CCWGG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 35, 207
BseRI GAGGAG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 26, 105
BsgI GTGCAG 1 cut(s) 9
BshTI ACCGGT 1 cut(s) 17
BsiSI CCGG 2 cut(s) 18, 124
BslI CCNNNNNNNGG 2 cut(s) 35, 207
BsmAI GTCTC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 5 cut(s) 3, 49, 62, 153, 242
BspACI CCGC 4 cut(s) 43, 91, 132, 174
BspPI GGATC 2 cut(s) 57, 161
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssMI GATC 5 cut(s) 3, 49, 62, 153, 242
BssNI GRCGYC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 88
BstENI CCTNNNNNAGG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 5 cut(s) 6, 52, 65, 156, 245
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 5 cut(s) 3, 49, 62, 153, 242
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 26, 105
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 17
CseI GACGC 1 cut(s) 96
CsiI ACCWGGT 1 cut(s) 200
Csp6I GTAC 1 cut(s) 21
CspAI ACCGGT 1 cut(s) 17
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
CviQI GTAC 1 cut(s) 21
DpnI GATC 5 cut(s) 5, 51, 64, 155, 244
DpnII GATC 5 cut(s) 3, 49, 62, 153, 242
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 125
Eco47III AGCGCT 1 cut(s) 97
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 200
FaiI YATR 1 cut(s) 110
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 4 cut(s) 40, 43, 91, 94
Fsp4HI GCNGC 4 cut(s) 40, 43, 91, 94
GlaI GCGC 1 cut(s) 97
GluI GCNGC 4 cut(s) 40, 43, 91, 94
HaeII RGCGCY 1 cut(s) 99
HapII CCGG 2 cut(s) 18, 124
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 88
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 57
HpaII CCGG 2 cut(s) 18, 124
HphI GGTGA 2 cut(s) 44, 268
Hpy188I TCNGA 1 cut(s) 62
Hpy99I CGWCG 3 cut(s) 78, 90, 106
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 88
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 5 cut(s) 3, 49, 62, 153, 242
LmnI GCTCC 2 cut(s) 103, 261
LpnPI CCDG 4 cut(s) 31, 137, 187, 214
Lsp1109I GCAGC 2 cut(s) 26, 105
LweI GCATC 1 cut(s) 72
MabI ACCWGGT 1 cut(s) 200
MalI GATC 5 cut(s) 5, 51, 64, 155, 244
MboI GATC 5 cut(s) 3, 49, 62, 153, 242
MflI RGATCY 1 cut(s) 242
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 3 cut(s) 39, 144, 252
MspI CCGG 2 cut(s) 18, 124
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
NdeII GATC 5 cut(s) 3, 49, 62, 153, 242
NmeAIII GCCGAG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PflMI CCANNNNNTGG 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 17
PkrI GCNGC 4 cut(s) 41, 44, 92, 95
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SatI GCNGC 4 cut(s) 40, 43, 91, 94
Sau3AI GATC 5 cut(s) 3, 49, 62, 153, 242
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 202
SetI ASST 2 cut(s) 31, 206
SexAI ACCWGGT 1 cut(s) 200
SfaNI GCATC 1 cut(s) 72
SsiI CCGC 4 cut(s) 43, 91, 132, 174
StyD4I CCNGG 1 cut(s) 200
TaqII GACCGA 1 cut(s) 107
TauI GCSGC 2 cut(s) 45, 93
TseI GCWGC 2 cut(s) 39, 93
TspGWI ACGGA 3 cut(s) 55, 90, 91
Van91I CCANNNNNTGG 1 cut(s) 207
XagI CCTNNNNNAGG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.