Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003059

Physical Location & Seq

Genomic Coordinates Reverse (-)

26536752 .. 26539913

Gene Structure 3162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG163200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGGCAGGGATTGGGCCGAGGTCCGACCCAAGAGGTGGTTGAGCGTGATGTGGCGACGGAGAAGCGGAGGTTCATGGCGAGGGACTCGTTTAGCTACCCAATGTTTCAGGCGGGGCCGAGGATCTGTTTGGGGAAGGAGATGTCGTTTTTGCAGATGAAAAGGGTGGTGGCTGAGGTTTTGAAGAGGTTTAAGGTTGTGCCGGCCGGAGAAGAGGGAGAATGGGAAGGAGCCGGAGTTGCTTGCCTTCCTAACCCTTATAGGGCCTTAAAGGAGGCGGAGAAGAGTGTGAAATCCAAAGTTCCGCTGCAAAAAGGACCAGCTCCGCCTTCCTCGTCCTCTTCATGCACTAACAACCCAGTGGGTGGCCACAGCGGCCCCTGCGAGATTCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

p450

Protein Analysis

132

Amino Acids

14.33

Weight (kDa)

9.33

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	28 - 72	2.5e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22180
rosa_chinensis	RchiOBHm_Chr2g0099721 RchiOBHm_Chr5g0014701 RchiOBHm_Chr6g0268151 RchiOBHm_Chr7g0195941
rosa_laevigata	RLG00000012942 RLG00000013929 RLG00000035083
rosa_multiflora	Rmu_co7982498.1_g000001 Rmu_sc0000120.1_g000021 Rmu_sc0000666.1_g000013 Rmu_sc0001839.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018670 Rroxscaffold_5G00357920 Rroxscaffold_7G00200000
rosa_rugosa	Rorug01G0481900 Rorug05G0020100 Rorug06G0026100 Rorug06G0039200 Rorug06G0200100 Rorug06G0200700
rosa_samantha	Rh5AG115800 Rh5AG441000 Rh5BG112500 Rh5CG124100 Rh5CG480200 Rh5DG112100 Rh6AG159000 Rh6AG159100 Rh6AG312000 Rh6BG163200 Rh6BG318600 Rh6BG318900 Rh6CG154900 Rh6CG155000 Rh6DG149200 Rh6DG311200 Rh7CG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	37, 365
AciI	CCGC	6 cut(s)	67, 113, 278, 305, 326, 375
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	204, 367
AfiI	CCNNNNNNNGG	3 cut(s)	37, 262, 365
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	2 cut(s)	96, 323
AluI	AGCT	2 cut(s)	96, 323
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	6 cut(s)	16, 116, 204, 264, 367, 376
ApeKI	GCWGC	1 cut(s)	307
AspS9I	GGNCC	6 cut(s)	16, 23, 116, 264, 317, 377
AvaII	GGWCC	2 cut(s)	23, 317
BalI	TGGCCA	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	375
BisI	GCNGC	2 cut(s)	308, 376
BlsI	GCNGC	2 cut(s)	309, 377
Bme18I	GGWCC	2 cut(s)	23, 317
BmgT120I	GGNCC	6 cut(s)	16, 23, 116, 264, 317, 377
BmiI	GGNNCC	3 cut(s)	117, 232, 379
BmrI	ACTGGG	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	19, 119
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 222, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 262, 365
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	19, 119
BseLI	CCNNNNNNNGG	3 cut(s)	37, 262, 365
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	359
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	6 cut(s)	18, 118, 206, 266, 369, 378
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	203, 207, 234
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	37, 262, 365
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	6 cut(s)	18, 118, 206, 266, 369, 378
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	6 cut(s)	67, 113, 278, 305, 326, 375
BspANI	GGCC	6 cut(s)	18, 118, 206, 266, 369, 378
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	117, 232, 379
BspPI	GGATC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	19, 119
BssMI	GATC	1 cut(s)	123
Bst6I	CTCTTC	4 cut(s)	179, 207, 278, 346
BstC8I	GCNNGC	2 cut(s)	204, 244
BstDEI	CTNAG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 375, 381
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	6 cut(s)	18, 118, 206, 266, 369, 378
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	204, 244
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	6 cut(s)	16, 23, 116, 264, 317, 377
CviAII	CATG	2 cut(s)	76, 345
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
EaeI	YGGCCR	2 cut(s)	204, 367
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	4 cut(s)	179, 207, 278, 346
EarI	CTCTTC	4 cut(s)	179, 207, 278, 346
EciI	GGCGGA	2 cut(s)	293, 315
EclXI	CGGCCG	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	23, 317
Eco52I	CGGCCG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	264
FaeI	CATG	2 cut(s)	79, 348
FaiI	YATR	4 cut(s)	77, 261, 346, 393
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	75, 344
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	308, 376
Fsp4HI	GCNGC	2 cut(s)	308, 376
GluI	GCNGC	2 cut(s)	308, 376
HaeIII	GGCC	6 cut(s)	18, 118, 206, 266, 369, 378
HapII	CCGG	3 cut(s)	203, 207, 234
Hin1II	CATG	2 cut(s)	79, 348
HinfI	GANTC	2 cut(s)	86, 388
HpaII	CCGG	3 cut(s)	203, 207, 234
Hpy188I	TCNGA	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	4 cut(s)	130, 221, 257, 339
HpyCH4V	TGCA	3 cut(s)	154, 310, 348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 375, 381
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	79, 348
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	230, 328
LpnPI	CCDG	7 cut(s)	95, 216, 220, 247, 333, 372, 394
Lsp1109I	GCAGC	1 cut(s)	294
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	4 cut(s)	196, 224, 295, 333
MflI	RGATCY	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	369
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	50
Mox20I	TGGCCA	1 cut(s)	369
MroNI	GCCGGC	1 cut(s)	202
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	2 cut(s)	192, 269
Msp20I	TGGCCA	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	307, 375
MspI	CCGG	3 cut(s)	203, 207, 234
MwoI	GCNNNNNNNGC	3 cut(s)	239, 375, 381
NaeI	GCCGGC	1 cut(s)	204
NdeII	GATC	1 cut(s)	123
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	79, 348
NlaIV	GGNNCC	3 cut(s)	117, 232, 379
NmeAIII	GCCGAG	2 cut(s)	44, 144
PdiI	GCCGGC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	388
PflMI	CCANNNNNTGG	2 cut(s)	37, 365
PkrI	GCNGC	2 cut(s)	309, 377
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PspN4I	GGNNCC	3 cut(s)	117, 232, 379
PspPI	GGNCC	6 cut(s)	16, 23, 116, 264, 317, 377
PsuI	RGATCY	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	192, 269
SatI	GCNGC	2 cut(s)	308, 376
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	6 cut(s)	16, 23, 116, 264, 317, 377
SchI	GAGTC	1 cut(s)	80
SetI	ASST	8 cut(s)	25, 39, 74, 98, 180, 191, 198, 325
SfiI	GGCCNNNNNGGCC	1 cut(s)	375
SinI	GGWCC	2 cut(s)	23, 317
SsiI	CCGC	6 cut(s)	67, 113, 278, 305, 326, 375
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	192, 269
Tru9I	TTAA	2 cut(s)	192, 269
TscAI	CASTG	1 cut(s)	366
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	64, 173, 333, 380
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	366
Van91I	CCANNNNNTGG	2 cut(s)	37, 365
VpaK11BI	GGWCC	2 cut(s)	23, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.