RchiOBHm_Chr7g0195941

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
13783138 .. 13785069
1932 bp
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UTR
Exon/CDS
Intron
PRQ17523

Sequence Viewer

Length: 174 bp
ATGAGACTCCAAAATGATCTTCTTACTAATCGATTGGAATCAAGTACTACACCTCTTCAAGGCCGCCGCCGAGATCACCGACTCCGATCCGCAAAACAACTGACGATGCGACTCTGCAGCGTTCCGTCGCTTCTGTTTCTCTGTCTCCGGTGCTGCGGTGGAAAGCGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.61

Weight (kDa)

11.42

Isoelectric Point (pI)

77.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 64, 67, 90, 156
AclWI GGATC 1 cut(s) 81
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 59
AjuI GAANNNNNNNTTGG 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 117, 153
AsuHPI GGTGA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 129, 140
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 4 cut(s) 64, 67, 118, 154
BlsI GCNGC 4 cut(s) 65, 68, 119, 155
BmcAI AGTACT 1 cut(s) 46
BmsI GCATC 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 31
BsaBI GATNNNNATC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 37
BseCI ATCGAT 1 cut(s) 31
BseJI GATNNNNATC 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 129, 140
BshFI GGCC 1 cut(s) 63
BshVI ATCGAT 1 cut(s) 31
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 16, 73, 86
BspACI CCGC 4 cut(s) 64, 67, 90, 156
BspANI GGCC 1 cut(s) 63
BspDI ATCGAT 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 1 cut(s) 81
BssMI GATC 3 cut(s) 16, 73, 86
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 57
BstKTI GATC 3 cut(s) 19, 76, 89
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 16, 73, 86
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 129, 140
Bsu15I ATCGAT 1 cut(s) 31
BsuRI GGCC 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 45
CviJI RGCY 1 cut(s) 63
CviKI_1 RGCY 1 cut(s) 63
CviQI GTAC 1 cut(s) 45
DpnI GATC 3 cut(s) 18, 75, 88
DpnII GATC 3 cut(s) 16, 73, 86
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 57
Fnu4HI GCNGC 4 cut(s) 64, 67, 118, 154
Fsp4HI GCNGC 4 cut(s) 64, 67, 118, 154
GluI GCNGC 4 cut(s) 64, 67, 118, 154
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 148
HinfI GANTC 4 cut(s) 6, 38, 81, 111
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 16, 73, 86
LpnPI CCDG 1 cut(s) 161
Lsp1109I GCAGC 2 cut(s) 129, 140
LweI GCATC 1 cut(s) 96
MalI GATC 3 cut(s) 18, 75, 88
MboI GATC 3 cut(s) 16, 73, 86
MboII GAAGA 2 cut(s) 11, 47
MlyI GAGTC 2 cut(s) 75, 105
MnlI CCTC 1 cut(s) 63
MspI CCGG 1 cut(s) 148
NdeII GATC 3 cut(s) 16, 73, 86
NmeAIII GCCGAG 1 cut(s) 95
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 4 cut(s) 65, 68, 119, 155
PleI GAGTC 2 cut(s) 75, 105
PpsI GAGTC 2 cut(s) 75, 105
PstI CTGCAG 1 cut(s) 119
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SatI GCNGC 4 cut(s) 64, 67, 118, 154
Sau3AI GATC 3 cut(s) 16, 73, 86
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 2 cut(s) 75, 105
SetI ASST 1 cut(s) 55
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 115
SgeI CNNG 4 cut(s) 54, 71, 83, 160
SsiI CCGC 4 cut(s) 64, 67, 90, 156
TaaI ACNGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 31
TatI WGTACW 1 cut(s) 44
TauI GCSGC 2 cut(s) 66, 69
TfiI GAWTC 1 cut(s) 38
TseI GCWGC 2 cut(s) 117, 153
TspGWI ACGGA 1 cut(s) 114
XagI CCTNNNNNAGG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.