RchiOBHm_Chr6g0268151

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003059
Physical Location & Seq
Reverse (-)
24994401 .. 24994670
270 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24051

Sequence Viewer

Length: 270 bp
ATGGGGCAGGGATTGGGCCGAGGTCCGACCCAAGAGGTGGTTGAGCGTGATGTGGCGACGGAGAAGCGGAGGTTCATGGCGAGGGACTCGTTTAGCTACCCAATGTTTCAGGCGGGGCCGAGGATCTGTTTGGGGAAGGAGATGTCGTTTTTGCAGATGAAAAGGGTGGTGGCTGAGGTTTTGAAGAGGTTTAAGGTTGTGCCGGCCGGAGAAGAGGGAGAATGGGAAGGAGCCGGAGTTGCTTGCCTTCCTAACCGTAAAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

89

Amino Acids

9.99

Weight (kDa)

9.14

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 28 - 71 1.5e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 37
AciI CCGC 2 cut(s) 67, 113
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
AlwI GGATC 1 cut(s) 131
AoxI GGCC 3 cut(s) 16, 116, 204
AspS9I GGNCC 3 cut(s) 16, 23, 116
AvaII GGWCC 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 16, 23, 116
BmiI GGNNCC 2 cut(s) 117, 232
Bpu10I CCTNAGC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 19, 119
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 19, 119
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 165
BseX3I CGGCCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 3 cut(s) 18, 118, 206
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 3 cut(s) 203, 207, 234
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 3 cut(s) 18, 118, 206
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 2 cut(s) 67, 113
BspANI GGCC 3 cut(s) 18, 118, 206
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 117, 232
BspPI GGATC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 19, 119
BssMI GATC 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 2 cut(s) 179, 207
BstC8I GCNNGC 2 cut(s) 204, 244
BstDEI CTNAG 1 cut(s) 174
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 3 cut(s) 18, 118, 206
Cac8I GCNNGC 2 cut(s) 204, 244
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 3 cut(s) 16, 23, 116
CviAII CATG 1 cut(s) 76
CviJI RGCY 6 cut(s) 18, 96, 118, 173, 206, 233
CviKI_1 RGCY 6 cut(s) 18, 96, 118, 173, 206, 233
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 179, 207
EarI CTCTTC 2 cut(s) 179, 207
EclXI CGGCCG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 23
Eco52I CGGCCG 1 cut(s) 204
FaeI CATG 1 cut(s) 79
FaiI YATR 1 cut(s) 77
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 75
FauI CCCGC 1 cut(s) 106
HaeIII GGCC 3 cut(s) 18, 118, 206
HapII CCGG 3 cut(s) 203, 207, 234
Hin1II CATG 1 cut(s) 79
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 203, 207, 234
Hpy188I TCNGA 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 130, 221, 257
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 79
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 4 cut(s) 95, 216, 220, 247
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 2 cut(s) 196, 224
MflI RGATCY 1 cut(s) 123
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 8 cut(s) 14, 28, 63, 75, 114, 169, 180, 208
MroNI GCCGGC 1 cut(s) 202
MseI TTAA 1 cut(s) 192
MspI CCGG 3 cut(s) 203, 207, 234
MwoI GCNNNNNNNGC 1 cut(s) 239
NaeI GCCGGC 1 cut(s) 204
NdeII GATC 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 202
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 117, 232
NmeAIII GCCGAG 2 cut(s) 44, 144
PdiI GCCGGC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 37
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 117, 232
PspPI GGNCC 3 cut(s) 16, 23, 116
PsuI RGATCY 1 cut(s) 123
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 3 cut(s) 16, 23, 116
SchI GAGTC 1 cut(s) 80
SetI ASST 7 cut(s) 25, 39, 74, 98, 180, 191, 198
SinI GGWCC 1 cut(s) 23
SsiI CCGC 2 cut(s) 67, 113
TaaI ACNGT 1 cut(s) 257
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 64, 173
TspGWI ACGGA 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.