Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000666.1

Orthogroup ID

OG0003059

Physical Location & Seq

Genomic Coordinates Reverse (-)

43309 .. 44295

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000666.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgagtgccaacccaaaacctgtcttagcttatagggccttaatggagacggagaagagtgttacaaataaagctccgctgcaaagaggaccagttccgccttcctcgtcctcttcatgcacttacatcccagtggatggccgagggattcgattccctccaaacggtgcagacgacgccgtttcgtcttccgattcagtctctgtctccggctctcatctctctcgcatttcagcagtacagagacggttgaaggtcttcgccaaccgcacgatgatggagaagcaggttatcgtggtctttgaagtcacggcggccatagggccttactggtcagccgtcgtctccgattacgtcgaaaaggtcatcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med25_VWA

Protein Analysis

124

Amino Acids

13.4

Weight (kDa)

9.66

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003059)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22180
rosa_chinensis	RchiOBHm_Chr2g0099721 RchiOBHm_Chr5g0014701 RchiOBHm_Chr6g0268151 RchiOBHm_Chr7g0195941
rosa_laevigata	RLG00000012942 RLG00000013929 RLG00000035083
rosa_multiflora	Rmu_co7982498.1_g000001 Rmu_sc0000120.1_g000021 Rmu_sc0000666.1_g000013 Rmu_sc0001839.1_g000008
rosa_roxburghii	Rroxscaffold_1G00018670 Rroxscaffold_5G00357920 Rroxscaffold_7G00200000
rosa_rugosa	Rorug01G0481900 Rorug05G0020100 Rorug06G0026100 Rorug06G0039200 Rorug06G0200100 Rorug06G0200700
rosa_samantha	Rh5AG115800 Rh5AG441000 Rh5BG112500 Rh5CG124100 Rh5CG480200 Rh5DG112100 Rh6AG159000 Rh6AG159100 Rh6AG312000 Rh6BG163200 Rh6BG318600 Rh6BG318900 Rh6CG154900 Rh6CG155000 Rh6DG149200 Rh6DG311200 Rh7CG011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	4 cut(s)	77, 98, 268, 314
AcoI	YGGCCR	2 cut(s)	139, 315
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	137, 164
AgsI	TTSAA	2 cut(s)	253, 305
AluBI	AGCT	2 cut(s)	29, 74
AluI	AGCT	2 cut(s)	29, 74
Alw26I	GTCTC	5 cut(s)	41, 205, 211, 238, 349
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	36, 139, 315, 323
ApeKI	GCWGC	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	36, 89, 323
AvaII	GGWCC	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	180, 250
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	2 cut(s)	131, 271
BceAI	ACGGC	3 cut(s)	164, 323, 327
BcoDI	GTCTC	5 cut(s)	41, 205, 211, 238, 349
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	2 cut(s)	80, 315
BlsI	GCNGC	2 cut(s)	81, 316
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	36, 89, 323
BmrI	ACTGGG	1 cut(s)	125
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	2 cut(s)	180, 250
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 164
Bse1I	ACTGG	3 cut(s)	92, 131, 335
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	126, 142
BseLI	CCNNNNNNNGG	2 cut(s)	137, 164
BseNI	ACTGG	3 cut(s)	92, 131, 335
BseXI	GCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	38, 141, 317, 325
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	137, 164
BsmAI	GTCTC	5 cut(s)	41, 205, 211, 238, 349
BsmBI	CGTCTC	3 cut(s)	41, 238, 349
BsnI	GGCC	4 cut(s)	38, 141, 317, 325
BspACI	CCGC	4 cut(s)	77, 98, 268, 314
BspANI	GGCC	4 cut(s)	38, 141, 317, 325
BspMI	ACCTGC	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	92, 131, 335
BssECI	CCNNGG	1 cut(s)	142
BssNI	GRCGYC	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	167, 249
Bst6I	CTCTTC	2 cut(s)	50, 118
BstACI	GRCGYC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	126, 142
BstMAI	GTCTC	5 cut(s)	41, 205, 211, 238, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 176
BstV1I	GCAGC	1 cut(s)	66
BstV2I	GAAGAC	2 cut(s)	180, 250
BsuRI	GGCC	4 cut(s)	38, 141, 317, 325
BtsCI	GGATG	2 cut(s)	126, 142
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	277
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	36, 89, 323
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	1 cut(s)	117
CviJI	RGCY	8 cut(s)	29, 38, 74, 141, 213, 317, 325, 338
CviKI_1	RGCY	8 cut(s)	29, 38, 74, 141, 213, 317, 325, 338
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	139, 315
Eam1104I	CTCTTC	2 cut(s)	50, 118
EarI	CTCTTC	2 cut(s)	50, 118
EciI	GGCGGA	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	89
EcoO109I	RGGNCCY	2 cut(s)	36, 323
Esp3I	CGTCTC	3 cut(s)	41, 238, 349
FaeI	CATG	1 cut(s)	120
FaiI	YATR	3 cut(s)	33, 118, 320
FatI	CATG	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	80, 315
FokI	GGATG	2 cut(s)	113, 149
Fsp4HI	GCNGC	2 cut(s)	80, 315
GluI	GCNGC	2 cut(s)	80, 315
HaeIII	GGCC	4 cut(s)	38, 141, 317, 325
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	120
HinfI	GANTC	3 cut(s)	148, 153, 194
HpaII	CCGG	1 cut(s)	210
Hpy188I	TCNGA	2 cut(s)	193, 349
Hpy99I	CGWCG	3 cut(s)	179, 344, 359
HpyAV	CCTTC	2 cut(s)	111, 247
HpyCH4III	ACNGT	2 cut(s)	167, 249
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	82, 120, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 176
HpyF3I	CTNAG	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	33, 105, 144, 223, 272, 316, 355
Lsp1109I	GCAGC	1 cut(s)	66
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	61, 307
MboII	GAAGA	4 cut(s)	67, 105, 180, 250
MnlI	CCTC	5 cut(s)	80, 115, 121, 137, 168
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	2 cut(s)	131, 275
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	35, 176
NlaIII	CATG	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	148, 153, 194
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	81, 316
PspPI	GGNCC	3 cut(s)	36, 89, 323
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	2 cut(s)	131, 275
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	2 cut(s)	80, 315
Sau96I	GGNCC	3 cut(s)	36, 89, 323
SetI	ASST	8 cut(s)	22, 31, 76, 258, 291, 357, 366, 374
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	131, 275
SsiI	CCGC	4 cut(s)	77, 98, 268, 314
TaaI	ACNGT	2 cut(s)	167, 249
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	151, 357
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	148, 153, 194
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	138
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.