Rmu_sc0001839.1_g000008

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001839.1
OG0003059
Physical Location & Seq
Forward (+)
41887 .. 42192
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001839.1_g000008.1.cds

Sequence Viewer

Length: 306 bp
ctgacccaagaggtggttgaacgtgatgtggcgacggagaagcagaggttcatggcgaaggactcgtttagctacccaatgtttcaggcgggcccgaggatctgtttggggaaggagatgtcgtttttgcagatgaaaagggtggtggctgaggttttgaagaagtttaaggttgtgccggccggagaagagggagaatgggaaggagccagagttgcttgccttcctaaccgtaaaaatgaaagatgggtttccggtgaccgttgtggagaggggcttgagtattcgactatttatagtgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

101

Amino Acids

11.52

Weight (kDa)

7.88

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 13
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 13
AgsI TTSAA 2 cut(s) 20, 160
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 94
AoxI GGCC 2 cut(s) 91, 180
ApaI GGGCCC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 91, 92
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 95
BbvCI CCTCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 91, 92
BmiI GGNNCC 2 cut(s) 93, 208
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 254
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 95
BseX3I CGGCCG 1 cut(s) 180
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 93, 182
BsiEI CGRYCG 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 3 cut(s) 179, 183, 255
BslI CCNNNNNNNGG 1 cut(s) 13
BsnI GGCC 2 cut(s) 93, 182
BsoBI CYCGRG 1 cut(s) 94
Bsp120I GGGCCC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 93, 182
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 93, 208
BspPI GGATC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 233, 263
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 91, 180, 220
BstDEI CTNAG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 257
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstPI GGTNACC 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 180
BsuRI GGCC 2 cut(s) 93, 182
Cac8I GCNNGC 3 cut(s) 91, 180, 220
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 91, 92
CviAII CATG 1 cut(s) 52
CviJI RGCY 6 cut(s) 72, 93, 149, 182, 209, 277
CviKI_1 RGCY 6 cut(s) 72, 93, 149, 182, 209, 277
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EclXI CGGCCG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 95
Eco52I CGGCCG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 94
Eco91I GGTNACC 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 95
FaeI CATG 1 cut(s) 55
FaiI YATR 2 cut(s) 53, 297
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 95
HaeIII GGCC 2 cut(s) 93, 182
HapII CCGG 3 cut(s) 179, 183, 255
Hin1II CATG 1 cut(s) 55
HinfI GANTC 1 cut(s) 62
HpaII CCGG 3 cut(s) 179, 183, 255
HphI GGTGA 1 cut(s) 269
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 4 cut(s) 52, 106, 197, 233
HpyCH4III ACNGT 2 cut(s) 233, 263
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 1 cut(s) 55
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 5 cut(s) 71, 192, 196, 223, 268
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 172, 200
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 95
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 6 cut(s) 4, 39, 90, 145, 184, 265
MroNI GCCGGC 1 cut(s) 178
MseI TTAA 1 cut(s) 168
MspI CCGG 3 cut(s) 179, 183, 255
MwoI GCNNNNNNNGC 1 cut(s) 215
NaeI GCCGGC 1 cut(s) 180
NdeII GATC 1 cut(s) 99
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 2 cut(s) 93, 208
NmuCI GTSAC 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 180
PflMI CCANNNNNTGG 1 cut(s) 13
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PspEI GGTNACC 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 93, 208
PspOMI GGGCCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 91, 92
PsuI RGATCY 1 cut(s) 99
SaqAI TTAA 1 cut(s) 168
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 2 cut(s) 91, 92
SchI GAGTC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 95
SetI ASST 6 cut(s) 15, 25, 50, 74, 156, 174
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SsiI CCGC 1 cut(s) 89
TaaI ACNGT 2 cut(s) 233, 263
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 287
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 40, 149, 255
TspGWI ACGGA 1 cut(s) 50
Van91I CCANNNNNTGG 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.