Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Reverse (-)

2798642 .. 2802221

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04850.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGTTGCAAATGCTTTGGTGGTGCAATTTTAGATAGGAAAAGGAGTAGTTCTGGTCAGACTAGCCATGGTTTTGATGGTAATTTGCCGGAAAATGTTAGAAGTTTCTCTTACAATGAATTGAGATCGGCCACCAATAATTTTCATGCGAGCAATAAGATAGGGCGAGGAGGTTTTGGAATTGTGTACAAGGGAACCCTAAAAAATGGAACTCAAGTTGCTGTGAAGACACTTTCTGCTAGGTCGAAACAGGGAGTCCGTGAATTCTTAAATGAGATTAACACTATATCAAATGTCCGACATCCAAACCTTGTTGAGTTGATTGGGTGCTGTGTTCAAGGAGCTGACCGCATTTTGGTCTATGAATATGTTGAGAATAACAGCCTTGATCGTGCATTATTAGGTGCAAGGAATGAAACCATCAAATTGGATTGGGAAAAAAGAAAAGCCATTTGCTTGGGGGTTGCTAGGGCTCTTACATTTCTTCATGAAGAACTGCAGCCCCATATTGTCCACAGAGATATCAAAGCTAGTAATATACTCCTTGACAGAGATTTAAATGCAAAGATTGGAGACTTTGGCTTGGCTAAACTTTTCCCAGATAATATCACTCATATTAGCACCAGGATTGCAGGAACAACAGGTTATTTGGCACCAGAATATGCATTGGGCGGTCAATTAACCATGAAGGCCGATGTTTACAGTTTCGGCGTTCTCATACTTGAAATAGTTGGTGGCAGAGGCAGTGCCAAGGAAAACTGGGGAGGGACAGAAAAGTTTCTCCTTGAATGGGCATGGCAACTCCACGAAGAAGGGAGACTATTGGAGTTAGTTGACCCAGAACTGGAAGATTATCCTGAGGAAGAAGTCCTTAGGTACATGAAGGTGGCATTTTTCTGCACTCAAGCTGCATCAAGCCGTAGACCACTGATGAGCCAGGTCCTTGAGATGCTCTCGAGAAACATCAGGCTGAACGAGAAGCAACTTACAGCCCCGGGTTTCTTCAACAACTCAGGGGGGCTCGGAGCATCCTCTTCGAGTAAAAAATCAGGTGCAGACTCAACTACCTACGTTATGAGTTCTGTCCCCGACACTATTACTCAAGTGACGCCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

373

Amino Acids

41.1

Weight (kDa)

8.43

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 248	4.6e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 316	6.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	652
AccI	GTMKAC	1 cut(s)	922
AciI	CCGC	2 cut(s)	349, 672
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	1109
AfaI	GTAC	2 cut(s)	188, 878
AfiI	CCNNNNNNNGG	3 cut(s)	355, 790, 844
AgsI	TTSAA	4 cut(s)	338, 725, 788, 1006
AjnI	CCWGG	2 cut(s)	623, 936
AluBI	AGCT	3 cut(s)	344, 530, 908
AluI	AGCT	3 cut(s)	344, 530, 908
Alw26I	GTCTC	2 cut(s)	567, 811
Ama87I	CYCGRG	2 cut(s)	955, 994
AoxI	GGCC	2 cut(s)	129, 690
ApeKI	GCWGC	2 cut(s)	499, 908
ApoI	RAATTY	1 cut(s)	263
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	1 cut(s)	940
AsuC2I	CCSGG	2 cut(s)	995, 996
AvaI	CYCGRG	2 cut(s)	955, 994
AvaII	GGWCC	1 cut(s)	940
AxyI	CCTNAGG	2 cut(s)	858, 872
BanI	GGYRCC	1 cut(s)	652
BanII	GRGCYC	2 cut(s)	475, 1023
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	511, 895
BccI	CCATC	2 cut(s)	71, 428
BceAI	ACGGC	1 cut(s)	903
BcgI	CGANNNNNNTGC	2 cut(s)	1017, 1051
BciT130I	CCWGG	2 cut(s)	625, 938
BcnI	CCSGG	2 cut(s)	995, 996
BcoDI	GTCTC	2 cut(s)	567, 811
BfaI	CTAG	4 cut(s)	63, 240, 468, 531
BfmI	CTRYAG	1 cut(s)	497
BisI	GCNGC	2 cut(s)	500, 909
BlsI	GCNGC	2 cut(s)	501, 910
Bme1390I	CCNGG	4 cut(s)	625, 938, 995, 996
Bme18I	GGWCC	1 cut(s)	940
BmeT110I	CYCGRG	2 cut(s)	955, 994
BmgT120I	GGNCC	1 cut(s)	940
BmiI	GGNNCC	2 cut(s)	196, 654
BmrFI	CCNGG	4 cut(s)	625, 938, 995, 996
BmrI	ACTGGG	1 cut(s)	769
BmsI	GCATC	3 cut(s)	920, 939, 1037
BmuI	ACTGGG	1 cut(s)	769
BpiI	GAAGAC	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	938, 970
BpuEI	CTTGAG	4 cut(s)	198, 888, 965, 1086
BpuMI	CCSGG	2 cut(s)	995, 996
BsaHI	GRCGYC	1 cut(s)	1109
BsaJI	CCNNGG	5 cut(s)	67, 750, 993, 994, 1112
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 790, 844
Bse1I	ACTGG	2 cut(s)	764, 849
Bse21I	CCTNAGG	2 cut(s)	858, 872
BseBI	CCWGG	2 cut(s)	625, 938
BseDI	CCNNGG	5 cut(s)	67, 750, 993, 994, 1112
BseGI	GGATG	2 cut(s)	301, 1028
BseLI	CCNNNNNNNGG	3 cut(s)	355, 790, 844
BseMII	CTCAG	2 cut(s)	849, 1026
BseNI	ACTGG	2 cut(s)	764, 849
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	511, 895
BsgI	GTGCAG	2 cut(s)	883, 1074
BshFI	GGCC	2 cut(s)	131, 692
BshNI	GGYRCC	1 cut(s)	652
BsiHKCI	CYCGRG	2 cut(s)	955, 994
BsiSI	CCGG	2 cut(s)	89, 995
BslFI	GGGAC	2 cut(s)	781, 1070
BslI	CCNNNNNNNGG	3 cut(s)	355, 790, 844
BsmAI	GTCTC	2 cut(s)	567, 811
BsmFI	GGGAC	2 cut(s)	781, 1070
BsnI	GGCC	2 cut(s)	131, 692
BsoBI	CYCGRG	2 cut(s)	955, 994
Bsp1286I	GDGCHC	2 cut(s)	475, 1023
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	125, 388
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	2 cut(s)	349, 672
BspANI	GGCC	2 cut(s)	131, 692
BspCNI	CTCAG	2 cut(s)	850, 1025
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	196, 654
BspMAI	CTGCAG	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	764, 849
BssECI	CCNNGG	5 cut(s)	67, 750, 993, 994, 1112
BssMI	GATC	2 cut(s)	125, 388
BssNI	GRCGYC	1 cut(s)	1109
BssT1I	CCWWGG	2 cut(s)	67, 750
Bst2UI	CCWGG	2 cut(s)	625, 938
Bst4CI	ACNGT	2 cut(s)	704, 1116
Bst6I	CTCTTC	1 cut(s)	1039
BstACI	GRCGYC	1 cut(s)	1109
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	858, 872, 1012
BstDSI	CCRYGG	2 cut(s)	67, 1112
BstF5I	GGATG	2 cut(s)	301, 1028
BstKTI	GATC	2 cut(s)	128, 391
BstMAI	GTCTC	2 cut(s)	567, 811
BstMBI	GATC	2 cut(s)	125, 388
BstNI	CCWGG	2 cut(s)	625, 938
BstSCI	CCNGG	4 cut(s)	623, 936, 993, 994
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	511, 895
BstV2I	GAAGAC	1 cut(s)	233
BstXI	CCANNNNNNTGG	2 cut(s)	427, 457
Bsu36I	CCTNAGG	2 cut(s)	858, 872
BsuRI	GGCC	2 cut(s)	131, 692
BtgI	CCRYGG	2 cut(s)	67, 1112
BtsCI	GGATG	2 cut(s)	301, 1028
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	2 cut(s)	751, 926
Cac8I	GCNNGC	1 cut(s)	151
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	940
Cfr9I	CCCGGG	1 cut(s)	994
Csp6I	GTAC	2 cut(s)	187, 877
CviAII	CATG	6 cut(s)	68, 146, 488, 685, 795, 880
CviQI	GTAC	2 cut(s)	187, 877
DdeI	CTNAG	3 cut(s)	858, 872, 1012
DpnI	GATC	2 cut(s)	127, 390
DpnII	GATC	2 cut(s)	125, 388
DraI	TTTAAA	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	1039
EarI	CTCTTC	1 cut(s)	1039
Eco130I	CCWWGG	2 cut(s)	67, 750
Eco24I	GRGCYC	2 cut(s)	475, 1023
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	940
Eco81I	CCTNAGG	2 cut(s)	858, 872
Eco88I	CYCGRG	2 cut(s)	955, 994
EcoO109I	RGGNCCY	1 cut(s)	940
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	623, 936
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	67, 750
EcoT22I	ATGCAT	1 cut(s)	667
EcoT38I	GRGCYC	2 cut(s)	475, 1023
ErhI	CCWWGG	2 cut(s)	67, 750
FaeI	CATG	6 cut(s)	71, 149, 491, 688, 798, 883
FalI	AAGNNNNNCTT	4 cut(s)	94, 126, 855, 887
FaqI	GGGAC	2 cut(s)	781, 1070
FatI	CATG	6 cut(s)	67, 145, 487, 684, 794, 879
FblI	GTMKAC	1 cut(s)	922
Fnu4HI	GCNGC	2 cut(s)	500, 909
FokI	GGATG	2 cut(s)	288, 1015
FriOI	GRGCYC	2 cut(s)	475, 1023
Fsp4HI	GCNGC	2 cut(s)	500, 909
FspBI	CTAG	4 cut(s)	63, 240, 468, 531
GluI	GCNGC	2 cut(s)	500, 909
HaeIII	GGCC	2 cut(s)	131, 692
HapII	CCGG	2 cut(s)	89, 995
Hin1I	GRCGYC	1 cut(s)	1109
Hin1II	CATG	6 cut(s)	71, 149, 491, 688, 798, 883
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	2 cut(s)	255, 1058
HpaII	CCGG	2 cut(s)	89, 995
Hpy166II	GTNNAC	5 cut(s)	187, 514, 700, 835, 923
Hpy188I	TCNGA	3 cut(s)	60, 299, 1025
Hpy188III	TCNNGA	4 cut(s)	488, 857, 955, 957
Hpy8I	GTNNAC	5 cut(s)	187, 514, 700, 835, 923
HpyAV	CCTTC	3 cut(s)	682, 806, 877
HpyCH4III	ACNGT	2 cut(s)	704, 1116
HpyCH4IV	ACGT	1 cut(s)	1071
HpyF3I	CTNAG	3 cut(s)	858, 872, 1012
HpySE526I	ACGT	1 cut(s)	1071
Hsp92I	GRCGYC	1 cut(s)	1109
Hsp92II	CATG	6 cut(s)	71, 149, 491, 688, 798, 883
Kzo9I	GATC	2 cut(s)	125, 388
LmnI	GCTCC	2 cut(s)	341, 1025
Lsp1109I	GCAGC	2 cut(s)	511, 895
LweI	GCATC	3 cut(s)	920, 939, 1037
MaeI	CTAG	4 cut(s)	63, 240, 468, 531
MaeII	ACGT	1 cut(s)	1071
MaeIII	GTNAC	1 cut(s)	1105
MalI	GATC	2 cut(s)	127, 390
MboI	GATC	2 cut(s)	125, 388
MboII	GAAGA	8 cut(s)	238, 476, 503, 821, 860, 875, 994, 1026
MhlI	GDGCHC	2 cut(s)	475, 1023
MluCI	AATT	8 cut(s)	27, 82, 119, 139, 180, 263, 425, 677
MlyI	GAGTC	2 cut(s)	264, 1052
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	6 cut(s)	161, 164, 734, 758, 853, 1042
Mph1103I	ATGCAT	1 cut(s)	667
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	4 cut(s)	269, 279, 557, 680
MslI	CAYNNNNRTG	1 cut(s)	884
MspI	CCGG	2 cut(s)	89, 995
MspR9I	CCNGG	4 cut(s)	625, 938, 995, 996
MvaI	CCWGG	2 cut(s)	625, 938
NciI	CCSGG	2 cut(s)	995, 996
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	2 cut(s)	125, 388
NlaIII	CATG	6 cut(s)	71, 149, 491, 688, 798, 883
NlaIV	GGNNCC	2 cut(s)	196, 654
NmuCI	GTSAC	1 cut(s)	1105
NsiI	ATGCAT	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	955
PagI	TCATGA	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	777
PkrI	GCNGC	2 cut(s)	501, 910
PleI	GAGTC	2 cut(s)	263, 1052
PpsI	GAGTC	2 cut(s)	263, 1052
PpuMI	RGGWCCY	1 cut(s)	940
Psp5II	RGGWCCY	1 cut(s)	940
Psp6I	CCWGG	2 cut(s)	623, 936
PspGI	CCWGG	2 cut(s)	623, 936
PspN4I	GGNNCC	2 cut(s)	196, 654
PspPI	GGNCC	1 cut(s)	940
PspPPI	RGGWCCY	1 cut(s)	940
PstI	CTGCAG	1 cut(s)	501
RsaI	GTAC	2 cut(s)	188, 878
RsaNI	GTAC	2 cut(s)	187, 877
RseI	CAYNNNNRTG	1 cut(s)	884
SaqAI	TTAA	4 cut(s)	269, 279, 557, 680
SatI	GCNGC	2 cut(s)	500, 909
Sau3AI	GATC	2 cut(s)	125, 388
Sau96I	GGNCC	1 cut(s)	940
SchI	GAGTC	2 cut(s)	264, 1052
ScrFI	CCNGG	4 cut(s)	625, 938, 995, 996
SduI	GDGCHC	2 cut(s)	475, 1023
SfaNI	GCATC	3 cut(s)	920, 939, 1037
SfcI	CTRYAG	1 cut(s)	497
Sfr274I	CTCGAG	1 cut(s)	955
SinI	GGWCC	1 cut(s)	940
SlaI	CTCGAG	1 cut(s)	955
SmaI	CCCGGG	1 cut(s)	996
SmiI	ATTTAAAT	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	5 cut(s)	213, 903, 944, 955, 1101
SmoI	CTYRAG	5 cut(s)	213, 903, 944, 955, 1101
Sse9I	AATT	8 cut(s)	27, 82, 119, 139, 180, 263, 425, 677
SsiI	CCGC	2 cut(s)	349, 672
SspMI	CTAG	4 cut(s)	63, 240, 468, 531
StyD4I	CCNGG	4 cut(s)	623, 936, 993, 994
StyI	CCWWGG	2 cut(s)	67, 750
SwaI	ATTTAAAT	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	704, 1116
TaiI	ACGT	1 cut(s)	1074
TaqI	TCGA	3 cut(s)	245, 956, 1037
TasI	AATT	8 cut(s)	27, 82, 119, 139, 180, 263, 425, 677
TatI	WGTACW	1 cut(s)	186
Tru1I	TTAA	4 cut(s)	269, 279, 557, 680
Tru9I	TTAA	4 cut(s)	269, 279, 557, 680
TscAI	CASTG	2 cut(s)	751, 933
TseFI	GTSAC	1 cut(s)	1105
TseI	GCWGC	2 cut(s)	499, 908
Tsp45I	GTSAC	1 cut(s)	1105
TspDTI	ATGAA	8 cut(s)	132, 134, 378, 429, 476, 504, 701, 896
TspGWI	ACGGA	1 cut(s)	248
TspMI	CCCGGG	1 cut(s)	994
TspRI	CASTG	2 cut(s)	751, 933
VpaK11BI	GGWCC	1 cut(s)	940
XapI	RAATTY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	955
XmaI	CCCGGG	1 cut(s)	994
XmiI	GTMKAC	1 cut(s)	922
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	4 cut(s)	63, 240, 468, 531
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.