Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035275.1

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Reverse (-)

2003 .. 2998

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035275.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgactgctttctcacttgatgctccaccaaatttgagaaccactttgccacaaaggccaaattcagcctctagggctcgtcctggggcaccaagtgttagatcatcttctgttggagctgtttctagtggaaaacctagacagcaatcatgttcaccttctagaggaagggcttcacatggcattgccagtactaatgggtactctcgtcaagtcacaagtaaatcatctcccaatgacagtgatgatgtaaatcctgtacttatggggacccaaagtgttgagagagtagtgaaccagaggaaattggcaccaccaaagcagtacgaccattctactcagaagaatcctgatgggaagtctttgtcctctgacagcttaggctttggaagaacactttcaaagaaatccttcgatatggctatgagacacatggatataaggcgaagcgtgcaagataacctacatcctgttctgacaaaagttccagcctcctctgtgtacagtgtccggacaagaccaacaaaaagcaagactactaatgctacggattctcctcttgccacatgcagcaatgccagctctgaaccaagtgtcaacaatatttctgcatactttgaaggttgtgaaattgaggacattgatcatggaagtgagaaaggaaactcctctccagcatcccagcaaggcaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

24.68

Weight (kDa)

9.91

Isoelectric Point (pI)

61.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	681
AccB1I	GGYRCC	2 cut(s)	88, 310
AccIII	TCCGGA	1 cut(s)	510
AcsI	RAATTY	2 cut(s)	31, 61
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	5 cut(s)	193, 203, 261, 326, 503
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	402, 620
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	3 cut(s)	119, 378, 582
AluI	AGCT	3 cut(s)	119, 378, 582
Alw26I	GTCTC	1 cut(s)	421
Aor13HI	TCCGGA	1 cut(s)	510
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	570
ApoI	RAATTY	2 cut(s)	31, 61
Asp700I	GAANNNNTTC	3 cut(s)	172, 397, 410
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BanI	GGYRCC	2 cut(s)	88, 310
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	4 cut(s)	72, 126, 138, 162
BfuAI	ACCTGC	1 cut(s)	681
BglI	GCCNNNNNGGC	2 cut(s)	55, 74
BisI	GCNGC	1 cut(s)	571
BlsI	GCNGC	1 cut(s)	572
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	4 cut(s)	90, 271, 272, 312
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	10, 686
BpmI	CTGGAG	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	183, 580
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	466, 677
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	2 cut(s)	183, 580
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	3 cut(s)	484, 546, 658
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	582
BseYI	CCCAGC	1 cut(s)	681
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	2 cut(s)	88, 310
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	79, 91
Bsp13I	TCCGGA	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	101, 643
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	352
BspEI	TCCGGA	1 cut(s)	510
BspLI	GGNNCC	4 cut(s)	90, 271, 272, 312
BspMI	ACCTGC	1 cut(s)	681
BspT107I	GGYRCC	2 cut(s)	88, 310
BsrDI	GCAATG	2 cut(s)	183, 580
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	101, 643
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	242, 506
BstAUI	TGTACA	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	452, 580
BstDEI	CTNAG	2 cut(s)	339, 379
BstENI	CCTNNNNNAGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	466, 677
BstKTI	GATC	2 cut(s)	104, 646
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	2 cut(s)	101, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 74, 451, 579
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	582
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	466, 677
BtsIMutI	CAGTG	2 cut(s)	247, 511
BveI	ACCTGC	1 cut(s)	681
Cac8I	GCNNGC	2 cut(s)	452, 580
Cfr13I	GGNCC	1 cut(s)	270
Csp6I	GTAC	5 cut(s)	192, 202, 260, 325, 502
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	5 cut(s)	150, 179, 433, 567, 647
CviQI	GTAC	5 cut(s)	192, 202, 260, 325, 502
DdeI	CTNAG	2 cut(s)	339, 379
DpnI	GATC	2 cut(s)	103, 645
DpnII	GATC	2 cut(s)	101, 643
DraIII	CACNNNGTG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	270
EcoNI	CCTNNNNNAGG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	5 cut(s)	153, 182, 436, 570, 650
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	5 cut(s)	149, 178, 432, 566, 646
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	571
FokI	GGATG	2 cut(s)	453, 664
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	571
FspBI	CTAG	4 cut(s)	72, 126, 138, 162
GluI	GCNGC	1 cut(s)	571
GsaI	CCCAGC	1 cut(s)	685
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	511
Hin1II	CATG	5 cut(s)	153, 182, 436, 570, 650
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	346, 551
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	4 cut(s)	155, 295, 502, 598
Hpy188I	TCNGA	4 cut(s)	342, 373, 477, 586
Hpy188III	TCNNGA	3 cut(s)	162, 350, 511
Hpy8I	GTNNAC	4 cut(s)	155, 295, 502, 598
HpyAV	CCTTC	4 cut(s)	162, 168, 421, 614
HpyCH4III	ACNGT	2 cut(s)	242, 506
HpyCH4V	TGCA	3 cut(s)	454, 570, 611
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 74, 451, 579
HpyF3I	CTNAG	2 cut(s)	339, 379
Hsp92II	CATG	5 cut(s)	153, 182, 436, 570, 650
KflI	GGGWCCC	1 cut(s)	270
Kpn2I	TCCGGA	1 cut(s)	510
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	101, 643
LmnI	GCTCC	2 cut(s)	28, 116
Lsp1109I	GCAGC	1 cut(s)	582
LweI	GCATC	2 cut(s)	10, 686
MaeI	CTAG	4 cut(s)	72, 126, 138, 162
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	103, 645
MboI	GATC	2 cut(s)	101, 643
MboII	GAAGA	3 cut(s)	99, 355, 402
MhlI	GDGCHC	2 cut(s)	79, 91
MluCI	AATT	4 cut(s)	31, 61, 305, 630
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	9 cut(s)	79, 158, 294, 379, 502, 505, 567, 628, 679
MroI	TCCGGA	1 cut(s)	510
MroXI	GAANNNNTTC	3 cut(s)	172, 397, 410
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	55, 74, 451, 579
NdeII	GATC	2 cut(s)	101, 643
NlaIII	CATG	5 cut(s)	153, 182, 436, 570, 650
NlaIV	GGNNCC	4 cut(s)	90, 271, 272, 312
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	570
PaqCI	CACCTGC	1 cut(s)	681
PdmI	GAANNNNTTC	3 cut(s)	172, 397, 410
PfeI	GAWTC	2 cut(s)	346, 551
PkrI	GCNGC	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	681
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	4 cut(s)	90, 271, 272, 312
PspPI	GGNCC	1 cut(s)	270
PspPPI	RGGWCCY	1 cut(s)	270
RsaI	GTAC	5 cut(s)	193, 203, 261, 326, 503
RsaNI	GTAC	5 cut(s)	192, 202, 260, 325, 502
RseI	CAYNNNNRTG	1 cut(s)	651
SatI	GCNGC	1 cut(s)	571
Sau3AI	GATC	2 cut(s)	101, 643
Sau96I	GGNCC	1 cut(s)	270
ScaI	AGTACT	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	79, 91
SetI	ASST	8 cut(s)	121, 139, 160, 380, 465, 584, 625, 695
SfaNI	GCATC	2 cut(s)	10, 686
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	4 cut(s)	31, 61, 305, 630
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	4 cut(s)	72, 126, 138, 162
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	242, 506
TaqI	TCGA	1 cut(s)	414
TasI	AATT	4 cut(s)	31, 61, 305, 630
TatI	WGTACW	3 cut(s)	191, 259, 501
TfiI	GAWTC	2 cut(s)	346, 551
TscAI	CASTG	2 cut(s)	247, 511
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	570
Tsp45I	GTSAC	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	2 cut(s)	247, 511
VpaK11BI	GGWCC	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	162
XapI	RAATTY	2 cut(s)	31, 61
XbaI	TCTAGA	1 cut(s)	161
XceI	RCATGY	1 cut(s)	570
XmnI	GAANNNNTTC	3 cut(s)	172, 397, 410
XspI	CTAG	4 cut(s)	72, 126, 138, 162
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.