Rh3CG127700

Flocculation protein FLO11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000913
Physical Location & Seq
Forward (+)
10408518 .. 10412426
3909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG127700.1

Sequence Viewer

Length: 1242 bp
ATGTATCAAGTCATGATTTGGAAAATGGCGGTGCAGCTAGCAAACACAAAGTTAGAGGCTGCTTCAGACAGCAAAATAGCATCTAAGCAGTCAACATTGCCATCACGACCGAATTCTTCCAGTACTAGTAACAGGAGGCCCTCACCATCAAGAGGGCCAACAGCTGCTCCTCGTAGATCTGCAACACCAACTGGACGGCCCACCACATTACCTTCATCAACCAAGCCATCAAGGTCCTCCACACCCAATTCACGAACCACCTTACCATCTGCTAAGCCAGTGGCTCCTCCAGTGAGGTCCTCAACTCCTTCTAGATCCACCGTGCGTTCTTCTACACCAACTGGCAGATCTTCTGTCCCAGCTTCTAAGTCAACGTCAAGATCAGCAACACCAACTCGCCTACCAAGTTCATCAAGTACACCTGCACTGTCTGCTCCTCGTGGCCGTTCTTCTTCAGTATCAAAGTCAGCTCCCCCAAGTTCGAAAAATCCTGCGCCATCACGTGGAAGTTCTCCAACAGTAAAATCTAGGTCGAAATCCTCAGATATGCCTGCTTTCTCACTTGATGCTCCACCAAATTTGAGAACCACTTTGCCACAAAGGCCAAATTCAGCCTCTAGGGCTCGTCCTGGGGCACCAAGTGTTAGATCATCTTCTGTTGGAGCTGTTTCTAGTGGAAAACCTAGACAGCAATCATGTTCACCTTCTAGAGGAAGGGCTTCACATGGCACTGCCAGTACTAATGGGTACTCTCGTCAAGTCACAAGTAAATCATCTCCCAATGACAGTGATGATGTAAATCCTGTACTTATGGGGACCCAAAGTGTTGAGAGAGTAGTGAACCAGAGGAAATTGGCACCACCAAAGCAGTATGACCATTCTACTCAGAAGAATCCTGATGGGAAGTCTTTGTCCTCTGACAGCTTAGGCTTTGGAAGAACACTTTCAAAGAAATCCTTCGATATGGCTATGAGACACATGGATATAAGGCGAAGCGTGCAAGATAACCTACATCCCGTTCTGACAAAAGTTCCAGCCTCCTCTGTGTACAGTGTCCGGACAAGACCAACAAAAAGCAAGACTACTAATGCTACGGATTCTCCTCTTGCTACATGCAGCAATGCTAGCTCTGAACCAAGTGTCAACAATATTTCTGCATACTTTGAAGGTTGTGAAATTGAGGACATTGATCATGGAAGTGAGAAAGGAAACTCCTCTCCAGCATGCCAGCAAGGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

413

Amino Acids

43.44

Weight (kDa)

11.31

Isoelectric Point (pI)

81.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 430, 1227
Acc36I ACCTGC 2 cut(s) 430, 1227
AccB1I GGYRCC 2 cut(s) 634, 856
AccB7I CCANNNNNTGG 1 cut(s) 503
AccIII TCCGGA 1 cut(s) 1056
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 3 cut(s) 112, 577, 607
AcuI CTGAAG 2 cut(s) 48, 438
AcvI CACGTG 1 cut(s) 503
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 6 cut(s) 124, 418, 739, 749, 807, 1049
AfiI CCNNNNNNNGG 3 cut(s) 152, 503, 710
AgsI TTSAA 2 cut(s) 948, 1166
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 7 cut(s) 37, 164, 362, 470, 665, 924, 1128
AluI AGCT 7 cut(s) 37, 164, 362, 470, 665, 924, 1128
Alw26I GTCTC 1 cut(s) 967
AlwI GGATC 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 1056
AoxI GGCC 5 cut(s) 137, 155, 197, 442, 602
ApeKI GCWGC 4 cut(s) 34, 59, 164, 1116
ApoI RAATTY 3 cut(s) 112, 577, 607
Asp700I GAANNNNTTC 3 cut(s) 718, 943, 956
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 6 cut(s) 138, 155, 198, 234, 297, 816
AsuHPI GGTGA 2 cut(s) 135, 693
AsuII TTCGAA 1 cut(s) 482
AsuNHI GCTAGC 2 cut(s) 37, 1124
AvaII GGWCC 3 cut(s) 234, 297, 816
BaeGI GKGCMC 1 cut(s) 637
BaeI ACNNNNGTAYC 2 cut(s) 739, 772
BanI GGYRCC 2 cut(s) 634, 856
BanII GRGCYC 1 cut(s) 625
BauI CACGAG 1 cut(s) 438
BbrPI CACGTG 1 cut(s) 503
BbvI GCAGC 4 cut(s) 46, 46, 151, 1128
BccI CCATC 6 cut(s) 109, 154, 235, 274, 505, 893
BceAI ACGGC 2 cut(s) 212, 429
BciT130I CCWGG 1 cut(s) 630
BclI TGATCA 1 cut(s) 1189
BcoDI GTCTC 1 cut(s) 967
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 9 cut(s) 38, 126, 312, 528, 618, 672, 684, 708, 1125
BfuAI ACCTGC 2 cut(s) 430, 1227
BglI GCCNNNNNGGC 3 cut(s) 601, 620, 1233
BglII AGATCT 2 cut(s) 176, 347
BisI GCNGC 4 cut(s) 35, 60, 165, 1117
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 4 cut(s) 36, 61, 166, 1118
BmcAI AGTACT 2 cut(s) 124, 739
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 3 cut(s) 234, 297, 816
BmgT120I GGNCC 6 cut(s) 138, 155, 198, 234, 297, 816
BmiI GGNNCC 5 cut(s) 285, 636, 817, 818, 858
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 89, 556
BmtI GCTAGC 2 cut(s) 41, 1128
BpmI CTGGAG 2 cut(s) 273, 1203
Bpu10I CCTNAGC 1 cut(s) 925
Bpu1102I GCTNAGC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 482
BsaAI YACGTR 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 798
BsaJI CCNNGG 1 cut(s) 629
BsaWI WCCGGW 1 cut(s) 1056
BsaXI ACNNNNNCTCC 4 cut(s) 151, 181, 1084, 1114
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 503, 710
Bse1I ACTGG 6 cut(s) 120, 196, 278, 290, 346, 735
Bse3DI GCAATG 2 cut(s) 95, 1126
Bse8I GATNNNNATC 1 cut(s) 798
BseAI TCCGGA 1 cut(s) 1056
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 629
BseGI GGATG 1 cut(s) 1012
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 3 cut(s) 152, 503, 710
BseMI GCAATG 2 cut(s) 95, 1126
BseMII CTCAG 2 cut(s) 555, 899
BseNI ACTGG 6 cut(s) 120, 196, 278, 290, 346, 735
BseRI GAGGAG 6 cut(s) 159, 276, 426, 1030, 1092, 1204
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 4 cut(s) 46, 46, 151, 1128
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 2 cut(s) 53, 408
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 5 cut(s) 139, 157, 199, 444, 604
BshNI GGYRCC 2 cut(s) 634, 856
BsiEI CGRYCG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 1057
BslFI GGGAC 2 cut(s) 341, 829
BslI CCNNNNNNNGG 3 cut(s) 152, 503, 710
BsmAI GTCTC 1 cut(s) 967
BsmFI GGGAC 2 cut(s) 341, 829
BsnI GGCC 5 cut(s) 139, 157, 199, 444, 604
Bsp119I TTCGAA 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 625, 637
Bsp13I TCCGGA 1 cut(s) 1056
Bsp1407I TGTACA 1 cut(s) 1047
Bsp143I GATC 6 cut(s) 176, 314, 347, 380, 647, 1189
Bsp1720I GCTNAGC 1 cut(s) 273
BspACI CCGC 1 cut(s) 29
BspANI GGCC 5 cut(s) 139, 157, 199, 444, 604
BspCNI CTCAG 2 cut(s) 554, 898
BspEI TCCGGA 1 cut(s) 1056
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 5 cut(s) 285, 636, 817, 818, 858
BspMI ACCTGC 2 cut(s) 430, 1227
BspOI GCTAGC 2 cut(s) 41, 1128
BspPI GGATC 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 482
BspT107I GGYRCC 2 cut(s) 634, 856
BsrDI GCAATG 2 cut(s) 95, 1126
BsrGI TGTACA 1 cut(s) 1047
BsrI ACTGG 6 cut(s) 120, 196, 278, 290, 346, 735
BssECI CCNNGG 1 cut(s) 629
BssMI GATC 6 cut(s) 176, 314, 347, 380, 647, 1189
BssSI CACGAG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 5 cut(s) 322, 429, 520, 788, 1052
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 1047
BstBAI YACGTR 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 482
BstC8I GCNNGC 6 cut(s) 39, 552, 998, 1126, 1225, 1229
BstDEI CTNAG 6 cut(s) 84, 273, 366, 541, 885, 925
BstENI CCTNNNNNAGG 1 cut(s) 708
BstF5I GGATG 1 cut(s) 1012
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 6 cut(s) 179, 317, 350, 383, 650, 1192
BstMAI GTCTC 1 cut(s) 967
BstMBI GATC 6 cut(s) 176, 314, 347, 380, 647, 1189
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 6 cut(s) 431, 601, 620, 997, 1125, 1233
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 2 cut(s) 1116, 1227
BstSCI CCNGG 1 cut(s) 628
BstSLI GKGCMC 1 cut(s) 637
BstV1I GCAGC 4 cut(s) 46, 46, 151, 1128
BstX2I RGATCY 3 cut(s) 176, 314, 347
BstYI RGATCY 3 cut(s) 176, 314, 347
BsuRI GGCC 5 cut(s) 139, 157, 199, 444, 604
BtsCI GGATG 1 cut(s) 1012
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 6 cut(s) 285, 297, 425, 729, 793, 1057
BveI ACCTGC 2 cut(s) 430, 1227
Cac8I GCNNGC 6 cut(s) 39, 552, 998, 1126, 1225, 1229
CciI TCATGA 1 cut(s) 12
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 6 cut(s) 138, 155, 198, 234, 297, 816
Csp6I GTAC 6 cut(s) 123, 417, 738, 748, 806, 1048
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 7 cut(s) 13, 696, 725, 979, 1113, 1193, 1224
CviQI GTAC 6 cut(s) 123, 417, 738, 748, 806, 1048
DdeI CTNAG 6 cut(s) 84, 273, 366, 541, 885, 925
DpnI GATC 6 cut(s) 178, 316, 349, 382, 649, 1191
DpnII GATC 6 cut(s) 176, 314, 347, 380, 647, 1189
DraIII CACNNNGTG 1 cut(s) 641
EaeI YGGCCR 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 625
Eco47I GGWCC 3 cut(s) 234, 297, 816
Eco57I CTGAAG 2 cut(s) 48, 438
Eco72I CACGTG 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 708
EcoO109I RGGNCCY 4 cut(s) 138, 234, 297, 816
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 625
FaeI CATG 7 cut(s) 16, 699, 728, 982, 1116, 1196, 1227
FalI AAGNNNNNCTT 2 cut(s) 941, 973
FaqI GGGAC 2 cut(s) 341, 829
FatI CATG 7 cut(s) 12, 695, 724, 978, 1112, 1192, 1223
FbaI TGATCA 1 cut(s) 1189
Fnu4HI GCNGC 4 cut(s) 35, 60, 165, 1117
FokI GGATG 1 cut(s) 999
FriOI GRGCYC 1 cut(s) 625
Fsp4HI GCNGC 4 cut(s) 35, 60, 165, 1117
FspBI CTAG 9 cut(s) 38, 126, 312, 528, 618, 672, 684, 708, 1125
GlaI GCGC 1 cut(s) 495
GluI GCNGC 4 cut(s) 35, 60, 165, 1117
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 2 cut(s) 273, 1203
HaeIII GGCC 5 cut(s) 139, 157, 199, 444, 604
HapII CCGG 1 cut(s) 1057
HhaI GCGC 1 cut(s) 496
Hin1II CATG 7 cut(s) 16, 699, 728, 982, 1116, 1196, 1227
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HincII GTYRAC 3 cut(s) 93, 372, 1144
HindII GTYRAC 3 cut(s) 93, 372, 1144
HinfI GANTC 2 cut(s) 892, 1097
HpaII CCGG 1 cut(s) 1057
HphI GGTGA 2 cut(s) 135, 693
Hpy166II GTNNAC 7 cut(s) 93, 372, 419, 701, 841, 1048, 1144
Hpy188I TCNGA 6 cut(s) 67, 544, 888, 919, 1023, 1132
Hpy188III TCNNGA 9 cut(s) 13, 105, 150, 252, 312, 378, 708, 896, 1057
Hpy8I GTNNAC 7 cut(s) 93, 372, 419, 701, 841, 1048, 1144
HpyAV CCTTC 6 cut(s) 222, 318, 708, 714, 967, 1160
HpyCH4III ACNGT 5 cut(s) 322, 429, 520, 788, 1052
HpyCH4IV ACGT 2 cut(s) 374, 502
HpyCH4V TGCA 6 cut(s) 34, 182, 425, 1000, 1116, 1157
HpyF10VI GCNNNNNNNGC 6 cut(s) 431, 601, 620, 997, 1125, 1233
HpyF3I CTNAG 6 cut(s) 84, 273, 366, 541, 885, 925
HpySE526I ACGT 2 cut(s) 374, 502
Hsp92II CATG 7 cut(s) 16, 699, 728, 982, 1116, 1196, 1227
HspAI GCGC 1 cut(s) 494
KflI GGGWCCC 1 cut(s) 816
Kpn2I TCCGGA 1 cut(s) 1056
Ksp22I TGATCA 1 cut(s) 1189
Kzo9I GATC 6 cut(s) 176, 314, 347, 380, 647, 1189
LmnI GCTCC 6 cut(s) 172, 289, 439, 475, 574, 662
Lsp1109I GCAGC 4 cut(s) 46, 46, 151, 1128
LweI GCATC 2 cut(s) 89, 556
MaeI CTAG 9 cut(s) 38, 126, 312, 528, 618, 672, 684, 708, 1125
MaeII ACGT 2 cut(s) 374, 502
MaeIII GTNAC 2 cut(s) 128, 760
MalI GATC 6 cut(s) 178, 316, 349, 382, 649, 1191
MboI GATC 6 cut(s) 176, 314, 347, 380, 647, 1189
MboII GAAGA 8 cut(s) 108, 321, 342, 441, 444, 645, 901, 948
MflI RGATCY 3 cut(s) 176, 314, 347
MhlI GDGCHC 2 cut(s) 625, 637
MluCI AATT 6 cut(s) 112, 247, 577, 607, 851, 1176
MmeI TCCRAC 2 cut(s) 539, 640
MroI TCCGGA 1 cut(s) 1056
MroXI GAANNNNTTC 3 cut(s) 718, 943, 956
MslI CAYNNNNRTG 1 cut(s) 1197
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 1057
MspR9I CCNGG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 630
MwoI GCNNNNNNNGC 6 cut(s) 431, 601, 620, 997, 1125, 1233
NdeII GATC 6 cut(s) 176, 314, 347, 380, 647, 1189
NheI GCTAGC 2 cut(s) 37, 1124
NlaIII CATG 7 cut(s) 16, 699, 728, 982, 1116, 1196, 1227
NlaIV GGNNCC 5 cut(s) 285, 636, 817, 818, 858
NmuCI GTSAC 1 cut(s) 760
NspI RCATGY 2 cut(s) 1116, 1227
NspV TTCGAA 1 cut(s) 482
PaeI GCATGC 1 cut(s) 1227
PagI TCATGA 1 cut(s) 12
PaqCI CACCTGC 2 cut(s) 430, 1227
PdmI GAANNNNTTC 3 cut(s) 718, 943, 956
PfeI GAWTC 2 cut(s) 892, 1097
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 4 cut(s) 36, 61, 166, 1118
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 503
PpuMI RGGWCCY 3 cut(s) 234, 297, 816
Psp5II RGGWCCY 3 cut(s) 234, 297, 816
Psp6I CCWGG 1 cut(s) 628
PspCI CACGTG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 5 cut(s) 285, 636, 817, 818, 858
PspPI GGNCC 6 cut(s) 138, 155, 198, 234, 297, 816
PspPPI RGGWCCY 3 cut(s) 234, 297, 816
PsuI RGATCY 3 cut(s) 176, 314, 347
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 6 cut(s) 124, 418, 739, 749, 807, 1049
RsaNI GTAC 6 cut(s) 123, 417, 738, 748, 806, 1048
RseI CAYNNNNRTG 1 cut(s) 1197
SatI GCNGC 4 cut(s) 35, 60, 165, 1117
Sau3AI GATC 6 cut(s) 176, 314, 347, 380, 647, 1189
Sau96I GGNCC 6 cut(s) 138, 155, 198, 234, 297, 816
ScaI AGTACT 2 cut(s) 124, 739
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 2 cut(s) 625, 637
SfaNI GCATC 2 cut(s) 89, 556
SfuI TTCGAA 1 cut(s) 482
SinI GGWCC 3 cut(s) 234, 297, 816
SmiMI CAYNNNNRTG 1 cut(s) 1197
SpeI ACTAGT 1 cut(s) 125
SphI GCATGC 1 cut(s) 1227
Sse9I AATT 6 cut(s) 112, 247, 577, 607, 851, 1176
SsiI CCGC 1 cut(s) 29
SspI AATATT 1 cut(s) 1150
SspMI CTAG 9 cut(s) 38, 126, 312, 528, 618, 672, 684, 708, 1125
StyD4I CCNGG 1 cut(s) 628
TaaI ACNGT 5 cut(s) 322, 429, 520, 788, 1052
TaiI ACGT 2 cut(s) 377, 505
TaqI TCGA 3 cut(s) 482, 533, 960
TaqII GACCGA 1 cut(s) 124
TasI AATT 6 cut(s) 112, 247, 577, 607, 851, 1176
TatI WGTACW 5 cut(s) 122, 416, 737, 805, 1047
TfiI GAWTC 2 cut(s) 892, 1097
TscAI CASTG 6 cut(s) 285, 297, 432, 736, 793, 1057
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 4 cut(s) 34, 59, 164, 1116
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 2 cut(s) 204, 399
TspGWI ACGGA 1 cut(s) 1109
TspRI CASTG 6 cut(s) 285, 297, 432, 736, 793, 1057
Van91I CCANNNNNTGG 1 cut(s) 503
VpaK11BI GGWCC 3 cut(s) 234, 297, 816
XagI CCTNNNNNAGG 1 cut(s) 708
XapI RAATTY 3 cut(s) 112, 577, 607
XbaI TCTAGA 2 cut(s) 311, 707
XceI RCATGY 2 cut(s) 1116, 1227
XmnI GAANNNNTTC 3 cut(s) 718, 943, 956
XspI CTAG 9 cut(s) 38, 126, 312, 528, 618, 672, 684, 708, 1125
ZrmI AGTACT 2 cut(s) 124, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.