Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Reverse (-)

2092686 .. 2096295

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G043800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGATAAAAACAGCCGGACCAACCTCCTTTATTTTAATAACAAGAAGACGGCCAAAACAAGTGCTAAAACCCAGCTTGGAGAGATCAAGGATCGAACTTGATTGGCCATCTGCAAATCCACGAGATTATAGAACCCCAGAAGATAGAAGAAGTTGTTTATTGTGGACAAGAATGGGTTGTAGCTGCTTTGGTACTTCAGTTGCTGACAGGAAAAGAAGGTCTGGTCACTTTGGCCATGATCTTGATGGAAATTTGCTGGAAAATATTAAAACTTTCTCCTACAATGAATTAAGATCGGCGACCGATGATTTCCATTCCAGTAATAAGATAGGGCGAGGAGGTTTTGGAACTGTTTACAAGGGAACCCTGAAAAGTGGAAAGCAAGTTGCTGTGAAGACACTTTCCGCTCGGTCGAAGCAGGGAGTCCGTGAATTCTTAAATGAGATTATTGCTATATCAAATGTCAGGCATCCAAACCTTGTTGAGTTGATTGGGTGCTGTGTTGAAGGAGCGGATCGGGTTTTGGTCTATGAATATGCTGAGAATAACAGCCTTGATCGTGCATTGTTAGGTTCAAAGAGTAAAAACATCATACTCAATTGGGAAAAAAGATCAGCCATTTGCTTGGGTACTGCTAGGGGTCTTATGTTTCTTCATGAGGAACTGATGCCACATATTGTCCATAGAGATATCAAGGCTAGTAATATACTTCTAGACAGAGATTTTAACCCCAAAATTGGAGACTTTGGGTTGGCTAAACTCTTCCCTGATAACATCACTCATATTAGCACAAGGATTGCAGGAACAACTGGTTATTTAGCACCAGAATACGCTCTGGGAGGTCAGTTAACCAAGAAGGCTGATGTTTACAGTTTCGGTGTTCTTGTTCTTGAAATAGTTAGTGGCAGAAGCAGTGCCAAGGAAAACTGGGGAGGGACAGAAAAGTTTCTCCTCGAATGGGCATGGCAGCTCCATGAAGAAGGGAGACTATTGGAGCTTGTCGACCCAGAGATGGGGGAATTTCCTGAGGAAGAACTCCTTAGGTACATGAAGGTTGCATTTTTCTGCACCCAAGCAGCAGCAAGCCGAAGGCCAATGATGAGTGTAGTTGTTGAGATGCTCTCAAGAAACATCAGAATCAATGAGAAGCAACTTACAGCCCCAGGTTTCTTCAACAATTCAGGGAGCCTCAGCGGACCTTCTTCAAGTAAAAAATCATCTGCCGACACAACTAGCTATCAGATGAGTTCTGTCCCTGACACTATAACTCAAGTAGCACCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

429

Amino Acids

47.84

Weight (kDa)

9.19

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	407, 512
AccI	GTMKAC	1 cut(s)	1002
AciI	CCGC	3 cut(s)	405, 512, 1194
AclWI	GGATC	2 cut(s)	98, 522
AcoI	YGGCCR	3 cut(s)	50, 104, 232
AcsI	RAATTY	3 cut(s)	250, 431, 1019
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	3 cut(s)	193, 631, 1046
AfiI	CCNNNNNNNGG	4 cut(s)	737, 958, 1012, 1013
AgsI	TTSAA	5 cut(s)	506, 576, 893, 1174, 1206
AjnI	CCWGG	1 cut(s)	1162
AluBI	AGCT	5 cut(s)	75, 183, 970, 997, 1236
AluI	AGCT	5 cut(s)	75, 183, 970, 997, 1236
Alw26I	GTCTC	2 cut(s)	735, 979
AlwI	GGATC	2 cut(s)	98, 522
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	50, 104, 232, 1091
ApeKI	GCWGC	4 cut(s)	183, 967, 1076, 1079
ApoI	RAATTY	3 cut(s)	250, 431, 1019
Asp700I	GAANNNNTTC	1 cut(s)	945
AspS9I	GGNCC	2 cut(s)	17, 1196
AvaII	GGWCC	2 cut(s)	17, 1196
AxyI	CCTNAGG	2 cut(s)	1026, 1040
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BalI	TGGCCA	2 cut(s)	106, 234
BauI	CACGAG	1 cut(s)	120
BbsI	GAAGAC	2 cut(s)	52, 401
BbvCI	CCTCAGC	1 cut(s)	1190
BbvI	GCAGC	4 cut(s)	170, 979, 1088, 1091
BccI	CCATC	3 cut(s)	115, 239, 1006
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	1164
BcoDI	GTCTC	2 cut(s)	735, 979
BfaI	CTAG	4 cut(s)	636, 699, 713, 1233
BisI	GCNGC	4 cut(s)	184, 968, 1077, 1080
BlsI	GCNGC	4 cut(s)	185, 969, 1078, 1081
Bme1390I	CCNGG	1 cut(s)	1164
Bme18I	GGWCC	2 cut(s)	17, 1196
BmgT120I	GGNCC	2 cut(s)	17, 1196
BmiI	GGNNCC	2 cut(s)	364, 1187
BmrFI	CCNGG	1 cut(s)	1164
BmrI	ACTGGG	1 cut(s)	937
BmsI	GCATC	3 cut(s)	478, 657, 1107
BmuI	ACTGGG	1 cut(s)	937
BpiI	GAAGAC	2 cut(s)	52, 401
BplI	GAGNNNNNCTC	2 cut(s)	1106, 1138
Bpu10I	CCTNAGC	1 cut(s)	1190
BpuEI	CTTGAG	2 cut(s)	1108, 1254
BsaJI	CCNNGG	2 cut(s)	918, 1162
Bsc4I	CCNNNNNNNGG	4 cut(s)	737, 958, 1012, 1013
Bse1I	ACTGG	3 cut(s)	318, 814, 932
Bse21I	CCTNAGG	2 cut(s)	1026, 1040
BseBI	CCWGG	1 cut(s)	1164
BseDI	CCNNGG	2 cut(s)	918, 1162
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	4 cut(s)	737, 958, 1012, 1013
BseMII	CTCAG	3 cut(s)	531, 1017, 1204
BseNI	ACTGG	3 cut(s)	318, 814, 932
BseRI	GAGGAG	2 cut(s)	351, 941
BseXI	GCAGC	4 cut(s)	170, 979, 1088, 1091
BseYI	CCCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	1051
Bsh1285I	CGRYCG	2 cut(s)	303, 413
BshFI	GGCC	4 cut(s)	52, 106, 234, 1093
BsiEI	CGRYCG	2 cut(s)	303, 413
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	2 cut(s)	949, 1238
BslI	CCNNNNNNNGG	4 cut(s)	737, 958, 1012, 1013
BsmAI	GTCTC	2 cut(s)	735, 979
BsmFI	GGGAC	2 cut(s)	949, 1238
BsnI	GGCC	4 cut(s)	52, 106, 234, 1093
Bsp143I	GATC	7 cut(s)	83, 90, 238, 293, 514, 556, 611
BspACI	CCGC	3 cut(s)	405, 512, 1194
BspANI	GGCC	4 cut(s)	52, 106, 234, 1093
BspCNI	CTCAG	3 cut(s)	532, 1018, 1203
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	364, 1187
BspPI	GGATC	2 cut(s)	98, 522
BsrBI	CCGCTC	2 cut(s)	407, 512
BsrI	ACTGG	3 cut(s)	318, 814, 932
BssECI	CCNNGG	2 cut(s)	918, 1162
BssMI	GATC	7 cut(s)	83, 90, 238, 293, 514, 556, 611
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	918
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	1164
Bst4CI	ACNGT	2 cut(s)	352, 872
Bst6I	CTCTTC	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	1084
BstDEI	CTNAG	4 cut(s)	540, 1026, 1040, 1190
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	7 cut(s)	86, 93, 241, 296, 517, 559, 614
BstMAI	GTCTC	2 cut(s)	735, 979
BstMBI	GATC	7 cut(s)	83, 90, 238, 293, 514, 556, 611
BstMCI	CGRYCG	2 cut(s)	303, 413
BstNI	CCWGG	1 cut(s)	1164
BstSCI	CCNGG	1 cut(s)	1162
BstV1I	GCAGC	4 cut(s)	170, 979, 1088, 1091
BstV2I	GAAGAC	2 cut(s)	52, 401
BstXI	CCANNNNNNTGG	1 cut(s)	625
Bsu36I	CCTNAGG	2 cut(s)	1026, 1040
BsuRI	GGCC	4 cut(s)	52, 106, 234, 1093
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	919
BtsIMutI	CAGTG	1 cut(s)	919
Cac8I	GCNNGC	1 cut(s)	1084
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	655
Cfr13I	GGNCC	2 cut(s)	17, 1196
Csp6I	GTAC	3 cut(s)	192, 630, 1045
CviAII	CATG	5 cut(s)	236, 656, 963, 974, 1048
CviQI	GTAC	3 cut(s)	192, 630, 1045
DdeI	CTNAG	4 cut(s)	540, 1026, 1040, 1190
DpnI	GATC	7 cut(s)	85, 92, 240, 295, 516, 558, 613
DpnII	GATC	7 cut(s)	83, 90, 238, 293, 514, 556, 611
EaeI	YGGCCR	3 cut(s)	50, 104, 232
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
Eco130I	CCWWGG	1 cut(s)	918
Eco32I	GATATC	1 cut(s)	691
Eco47I	GGWCC	2 cut(s)	17, 1196
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	2 cut(s)	1026, 1040
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	1162
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	918
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	5 cut(s)	239, 659, 966, 977, 1051
FalI	AAGNNNNNCTT	2 cut(s)	1023, 1055
FaqI	GGGAC	2 cut(s)	949, 1238
FatI	CATG	5 cut(s)	235, 655, 962, 973, 1047
FblI	GTMKAC	1 cut(s)	1002
Fnu4HI	GCNGC	4 cut(s)	184, 968, 1077, 1080
FokI	GGATG	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	184, 968, 1077, 1080
FspBI	CTAG	4 cut(s)	636, 699, 713, 1233
GluI	GCNGC	4 cut(s)	184, 968, 1077, 1080
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	52, 106, 234, 1093
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	5 cut(s)	239, 659, 966, 977, 1051
HincII	GTYRAC	2 cut(s)	849, 1003
HindII	GTYRAC	2 cut(s)	849, 1003
HinfI	GANTC	2 cut(s)	423, 1137
HpaI	GTTAAC	1 cut(s)	849
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	5 cut(s)	165, 355, 849, 868, 1003
Hpy188I	TCNGA	2 cut(s)	1136, 1242
Hpy188III	TCNNGA	6 cut(s)	242, 656, 713, 890, 1025, 1125
Hpy8I	GTNNAC	5 cut(s)	165, 355, 849, 868, 1003
HpyAV	CCTTC	7 cut(s)	210, 500, 850, 974, 1045, 1083, 1209
HpyCH4III	ACNGT	2 cut(s)	352, 872
HpyCH4V	TGCA	5 cut(s)	113, 563, 800, 1058, 1068
HpyF3I	CTNAG	4 cut(s)	540, 1026, 1040, 1190
Hsp92II	CATG	5 cut(s)	239, 659, 966, 977, 1051
KspAI	GTTAAC	1 cut(s)	849
Kzo9I	GATC	7 cut(s)	83, 90, 238, 293, 514, 556, 611
LmnI	GCTCC	4 cut(s)	509, 975, 994, 1185
Lsp1109I	GCAGC	4 cut(s)	170, 979, 1088, 1091
LweI	GCATC	3 cut(s)	478, 657, 1107
MaeI	CTAG	4 cut(s)	636, 699, 713, 1233
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	7 cut(s)	85, 92, 240, 295, 516, 558, 613
MbiI	CCGCTC	2 cut(s)	407, 512
MboI	GATC	7 cut(s)	83, 90, 238, 293, 514, 556, 611
MfeI	CAATTG	1 cut(s)	598
MlsI	TGGCCA	2 cut(s)	106, 234
MluCI	AATT	7 cut(s)	250, 287, 431, 598, 735, 1019, 1177
MluNI	TGGCCA	2 cut(s)	106, 234
MlyI	GAGTC	1 cut(s)	432
MnlI	CCTC	9 cut(s)	34, 329, 332, 652, 833, 926, 962, 1021, 1199
Mox20I	TGGCCA	2 cut(s)	106, 234
MroXI	GAANNNNTTC	1 cut(s)	945
MscI	TGGCCA	2 cut(s)	106, 234
MseI	TTAA	6 cut(s)	35, 267, 290, 437, 726, 848
Msp20I	TGGCCA	2 cut(s)	106, 234
MspA1I	CMGCKG	1 cut(s)	1194
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	1164
MunI	CAATTG	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	1164
NdeII	GATC	7 cut(s)	83, 90, 238, 293, 514, 556, 611
NlaIII	CATG	5 cut(s)	239, 659, 966, 977, 1051
NlaIV	GGNNCC	2 cut(s)	364, 1187
NmuCI	GTSAC	1 cut(s)	224
PagI	TCATGA	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	945
PfeI	GAWTC	1 cut(s)	1137
PkrI	GCNGC	4 cut(s)	185, 969, 1078, 1081
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	1162
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	1162
PspN4I	GGNNCC	2 cut(s)	364, 1187
PspPI	GGNCC	2 cut(s)	17, 1196
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	3 cut(s)	193, 631, 1046
RsaNI	GTAC	3 cut(s)	192, 630, 1045
SalI	GTCGAC	1 cut(s)	1001
SaqAI	TTAA	6 cut(s)	35, 267, 290, 437, 726, 848
SatI	GCNGC	4 cut(s)	184, 968, 1077, 1080
Sau3AI	GATC	7 cut(s)	83, 90, 238, 293, 514, 556, 611
Sau96I	GGNCC	2 cut(s)	17, 1196
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	1164
SfaNI	GCATC	3 cut(s)	478, 657, 1107
SinI	GGWCC	2 cut(s)	17, 1196
SmlI	CTYRAG	2 cut(s)	1123, 1269
SmoI	CTYRAG	2 cut(s)	1123, 1269
Sse9I	AATT	7 cut(s)	250, 287, 431, 598, 735, 1019, 1177
SsiI	CCGC	3 cut(s)	405, 512, 1194
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	4 cut(s)	636, 699, 713, 1233
StyD4I	CCNGG	1 cut(s)	1162
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	2 cut(s)	352, 872
TaqI	TCGA	4 cut(s)	93, 413, 954, 1002
TaqII	GACCGA	2 cut(s)	317, 399
TasI	AATT	7 cut(s)	250, 287, 431, 598, 735, 1019, 1177
TfiI	GAWTC	1 cut(s)	1137
Tru1I	TTAA	6 cut(s)	35, 267, 290, 437, 726, 848
Tru9I	TTAA	6 cut(s)	35, 267, 290, 437, 726, 848
TscAI	CASTG	1 cut(s)	919
TseFI	GTSAC	1 cut(s)	224
TseI	GCWGC	4 cut(s)	183, 967, 1076, 1079
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	5 cut(s)	300, 546, 644, 990, 1064
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	919
VpaK11BI	GGWCC	2 cut(s)	17, 1196
XapI	RAATTY	3 cut(s)	250, 431, 1019
XbaI	TCTAGA	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	1002
XmnI	GAANNNNTTC	1 cut(s)	945
XspI	CTAG	4 cut(s)	636, 699, 713, 1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.