Rw3G010310
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000913
Physical Location & Seq
Forward (+)
9887648 .. 9891307
3660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010310.1

Sequence Viewer

Length: 1155 bp
ATGGTTTGTAGTTGCTTTGGTGTGCTCAATTGGTGCAAAGGAAATAAGAATTTGGAACCTTCCAGCCAAGCCCAAGGGATTCCTACCAACAATGTAAGGCTCTTTTCTTATAATTCATTGAGGTCAGCGACCAGGAATTTTCATCCTTCAAACAAAATAGGTGGAGGAGGCTATGGAGTAGTCTATAAGGGAGTTTTAAGAGATGACACAGAAGTTGCGATCAAGTGTCTTTCTTCAGACTCTAGACAAGGAGCAAATGAATTTTTGACAGAGATCAACACGATATCAAGAATACGACACCCAAACCTGGTCGAGCTTATTGGCTGCTGTGTGGAGGACAATCACCGAATATTGGTATATGAATATCTGGAGAACAACAGTCTTGCAAGTTCTTTGCTTGGTTCAAAAAGTCATGTTCCTCTAGACTGGCCCCAGAGAGCAGCAATTTGCCTGGGTACAGCTACTGGTCTTGCTTTTCTTCATGACGAAGCTGAACAACATATTGTGCACAGAGATATCAAGGCTAGCAATATACTTCTCGATGCAAACTTTCATCCTAAAATTGGAGATTTTGGGCTGGCAAAACTTTTTCCTGATAATGTCACTCATCTTAGTACTAGAGTGGCAGGAACTGTTGGATATCTGGCCCCAGAATATGCACTTTTGGGACAGCTTACAAAAAAAGCAGATGTATACAGCTTTGGGGTTCTCTTGCTTGAAATAATTAGTGGCAGAAGTAGTAGTAAGGCAGCCTTTGGTGACGAACTGATGGTTCTGGTGGAATGGACTTGGAAACTGAAAGAAGAAGAAAGGCTTATAGAAATTGTTGATCCAGAATTGACTGCATATCCAGAGGCTGAGGTAATGCGCTTCATTAAGGTTGCGCTCTTTTGTACTCAAGAAGCTTCGCATCAAAGGCCGGCCATGAAGCAAGTAGTGGAAATGCTTTCCAAAGAGGTACAGCTAAATGAGAAGCTACTAGTAGAACCAAGGCCAAGGAGGTATGCACCTCAACATGGAGGTGGTGCCAGTGGGGAGGGAACATCATCTTCTCAGTCAGATAAAGATAAACGCGGGAAATCATTGGCAAATCCTGATGTAACTTCCACCCAGTCGTATATATATGAATCTCAAACGCAAATGTTTCCCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

384

Amino Acids

42.53

Weight (kDa)

6.43

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 48 - 314 8.9e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 50 - 316 8.6e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 1025
AccI GTMKAC 1 cut(s) 693
AccII CGCG 1 cut(s) 1074
AciI CCGC 1 cut(s) 1074
AclWI GGATC 1 cut(s) 824
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 3 cut(s) 49, 136, 260
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 4 cut(s) 457, 616, 895, 960
AfiI CCNNNNNNNGG 4 cut(s) 307, 352, 563, 1016
AgsI TTSAA 3 cut(s) 150, 405, 719
AhlI ACTAGT 1 cut(s) 979
AjnI CCWGG 4 cut(s) 131, 306, 450, 1148
AluBI AGCT 8 cut(s) 316, 461, 491, 673, 699, 905, 964, 976
AluI AGCT 8 cut(s) 316, 461, 491, 673, 699, 905, 964, 976
Alw21I GWGCWC 2 cut(s) 27, 510
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 1 cut(s) 824
AlwNI CAGNNNCTG 3 cut(s) 464, 632, 857
AoxI GGCC 5 cut(s) 428, 645, 917, 921, 992
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 3 cut(s) 324, 440, 749
ApoI RAATTY 3 cut(s) 49, 136, 260
AspLEI GCGC 2 cut(s) 870, 886
AspS9I GGNCC 2 cut(s) 429, 646
AsuHPI GGTGA 2 cut(s) 335, 770
AsuNHI GCTAGC 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 1025
Bbv12I GWGCWC 2 cut(s) 27, 510
BbvCI CCTCAGC 1 cut(s) 858
BbvI GCAGC 3 cut(s) 311, 452, 761
BccI CCATC 1 cut(s) 763
BciT130I CCWGG 4 cut(s) 133, 308, 452, 1150
BcuI ACTAGT 1 cut(s) 979
BfaI CTAG 5 cut(s) 243, 422, 525, 618, 980
BisI GCNGC 3 cut(s) 325, 441, 750
BlsI GCNGC 3 cut(s) 326, 442, 751
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 4 cut(s) 133, 308, 452, 1150
BmgT120I GGNCC 2 cut(s) 429, 646
BmiI GGNNCC 4 cut(s) 57, 431, 648, 1027
BmrFI CCNGG 4 cut(s) 133, 308, 452, 1150
BmrI ACTGGG 1 cut(s) 1105
BmsI GCATC 2 cut(s) 532, 919
BmtI GCTAGC 1 cut(s) 528
BmuI ACTGGG 1 cut(s) 1105
BpmI CTGGAG 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 882
BsaJI CCNNGG 5 cut(s) 73, 451, 989, 995, 1148
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 352, 563, 1016
Bse118I RCCGGY 1 cut(s) 919
Bse1I ACTGG 4 cut(s) 431, 469, 1029, 1111
BseBI CCWGG 4 cut(s) 133, 308, 452, 1150
BseDI CCNNGG 5 cut(s) 73, 451, 989, 995, 1148
BseGI GGATG 2 cut(s) 142, 553
BseLI CCNNNNNNNGG 4 cut(s) 307, 352, 563, 1016
BseMII CTCAG 2 cut(s) 849, 1067
BseNI ACTGG 4 cut(s) 431, 469, 1029, 1111
BseRI GAGGAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 3 cut(s) 311, 452, 761
Bsh1236I CGCG 1 cut(s) 1074
BshFI GGCC 5 cut(s) 430, 647, 919, 923, 994
BshNI GGYRCC 1 cut(s) 1025
BsiHKAI GWGCWC 2 cut(s) 27, 510
BsiSI CCGG 1 cut(s) 920
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 4 cut(s) 307, 352, 563, 1016
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 5 cut(s) 430, 647, 919, 923, 994
Bsp1286I GDGCHC 2 cut(s) 27, 510
Bsp143I GATC 3 cut(s) 219, 273, 829
BspACI CCGC 1 cut(s) 1074
BspANI GGCC 5 cut(s) 430, 647, 919, 923, 994
BspCNI CTCAG 2 cut(s) 850, 1066
BspFNI CGCG 1 cut(s) 1074
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 57, 431, 648, 1027
BspOI GCTAGC 1 cut(s) 528
BspPI GGATC 1 cut(s) 824
BspT107I GGYRCC 1 cut(s) 1025
BsrFI RCCGGY 1 cut(s) 919
BsrI ACTGG 4 cut(s) 431, 469, 1029, 1111
BssAI RCCGGY 1 cut(s) 919
BssECI CCNNGG 5 cut(s) 73, 451, 989, 995, 1148
BssMI GATC 3 cut(s) 219, 273, 829
BssNAI GTATAC 1 cut(s) 694
BssT1I CCWWGG 3 cut(s) 73, 989, 995
Bst1107I GTATAC 1 cut(s) 694
Bst2UI CCWGG 4 cut(s) 133, 308, 452, 1150
Bst4CI ACNGT 2 cut(s) 380, 634
BstC8I GCNNGC 3 cut(s) 526, 579, 921
BstDEI CTNAG 3 cut(s) 611, 858, 1053
BstF5I GGATG 2 cut(s) 142, 553
BstFNI CGCG 1 cut(s) 1074
BstHHI GCGC 2 cut(s) 870, 886
BstKTI GATC 3 cut(s) 222, 276, 832
BstMBI GATC 3 cut(s) 219, 273, 829
BstMWI GCNNNNNNNGC 1 cut(s) 916
BstNI CCWGG 4 cut(s) 133, 308, 452, 1150
BstSCI CCNGG 4 cut(s) 131, 306, 450, 1148
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 1 cut(s) 1074
BstV1I GCAGC 3 cut(s) 311, 452, 761
BstZ17I GTATAC 1 cut(s) 694
BsuRI GGCC 5 cut(s) 430, 647, 919, 923, 994
BtsCI GGATG 2 cut(s) 142, 553
BtsIMutI CAGTG 1 cut(s) 1036
Cac8I GCNNGC 3 cut(s) 526, 579, 921
CaiI CAGNNNCTG 3 cut(s) 464, 632, 857
CciI TCATGA 1 cut(s) 481
CfoI GCGC 2 cut(s) 870, 886
Cfr10I RCCGGY 1 cut(s) 919
Cfr13I GGNCC 2 cut(s) 429, 646
CsiI ACCWGGT 1 cut(s) 306
Csp6I GTAC 4 cut(s) 456, 615, 894, 959
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 4 cut(s) 413, 482, 925, 1016
CviQI GTAC 4 cut(s) 456, 615, 894, 959
DdeI CTNAG 3 cut(s) 611, 858, 1053
DpnI GATC 3 cut(s) 221, 275, 831
DpnII GATC 3 cut(s) 219, 273, 829
EaeI YGGCCR 1 cut(s) 921
Eco130I CCWWGG 3 cut(s) 73, 989, 995
Eco32I GATATC 3 cut(s) 285, 517, 641
Eco57I CTGAAG 1 cut(s) 219
EcoRII CCWGG 4 cut(s) 131, 306, 450, 1148
EcoRV GATATC 3 cut(s) 285, 517, 641
EcoT14I CCWWGG 3 cut(s) 73, 989, 995
ErhI CCWWGG 3 cut(s) 73, 989, 995
FaeI CATG 4 cut(s) 416, 485, 928, 1019
FalI AAGNNNNNCTT 4 cut(s) 737, 769, 798, 830
FaqI GGGAC 1 cut(s) 681
FatI CATG 4 cut(s) 412, 481, 924, 1015
FauI CCCGC 1 cut(s) 1067
FblI GTMKAC 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 325, 441, 750
FokI GGATG 2 cut(s) 129, 540
FseI GGCCGGCC 1 cut(s) 923
Fsp4HI GCNGC 3 cut(s) 325, 441, 750
FspBI CTAG 5 cut(s) 243, 422, 525, 618, 980
GlaI GCGC 2 cut(s) 869, 885
GluI GCNGC 3 cut(s) 325, 441, 750
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 5 cut(s) 430, 647, 919, 923, 994
HapII CCGG 1 cut(s) 920
HhaI GCGC 2 cut(s) 870, 886
Hin1II CATG 4 cut(s) 416, 485, 928, 1019
Hin6I GCGC 2 cut(s) 868, 884
HinP1I GCGC 2 cut(s) 868, 884
HindIII AAGCTT 1 cut(s) 903
HinfI GANTC 3 cut(s) 79, 239, 1127
HpaII CCGG 1 cut(s) 920
HphI GGTGA 2 cut(s) 335, 770
Hpy166II GTNNAC 2 cut(s) 508, 694
Hpy188I TCNGA 2 cut(s) 238, 1060
Hpy8I GTNNAC 2 cut(s) 508, 694
HpyAV CCTTC 2 cut(s) 69, 156
HpyCH4III ACNGT 2 cut(s) 380, 634
HpyCH4V TGCA 7 cut(s) 36, 386, 508, 545, 659, 845, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 916
HpyF3I CTNAG 3 cut(s) 611, 858, 1053
Hsp92II CATG 4 cut(s) 416, 485, 928, 1019
HspAI GCGC 2 cut(s) 868, 884
KroI GCCGGC 1 cut(s) 919
KroNI GCCGGC 1 cut(s) 921
Kzo9I GATC 3 cut(s) 219, 273, 829
LmnI GCTCC 1 cut(s) 251
Lsp1109I GCAGC 3 cut(s) 311, 452, 761
LweI GCATC 2 cut(s) 532, 919
MabI ACCWGGT 1 cut(s) 306
MaeI CTAG 5 cut(s) 243, 422, 525, 618, 980
MaeIII GTNAC 3 cut(s) 601, 758, 1099
MalI GATC 3 cut(s) 221, 275, 831
MboI GATC 3 cut(s) 219, 273, 829
MboII GAAGA 5 cut(s) 225, 470, 815, 818, 1041
MfeI CAATTG 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 27, 510
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 616
MroNI GCCGGC 1 cut(s) 919
MseI TTAA 2 cut(s) 197, 876
MslI CAYNNNNRTG 1 cut(s) 1020
MspI CCGG 1 cut(s) 920
MspR9I CCNGG 4 cut(s) 133, 308, 452, 1150
MunI CAATTG 1 cut(s) 28
MvaI CCWGG 4 cut(s) 133, 308, 452, 1150
MvnI CGCG 1 cut(s) 1074
MwoI GCNNNNNNNGC 1 cut(s) 916
NaeI GCCGGC 1 cut(s) 921
NdeII GATC 3 cut(s) 219, 273, 829
NgoMIV GCCGGC 1 cut(s) 919
NheI GCTAGC 1 cut(s) 524
NlaIII CATG 4 cut(s) 416, 485, 928, 1019
NlaIV GGNNCC 4 cut(s) 57, 431, 648, 1027
NmuCI GTSAC 2 cut(s) 601, 758
PagI TCATGA 1 cut(s) 481
PdiI GCCGGC 1 cut(s) 921
PfeI GAWTC 2 cut(s) 79, 1127
PkrI GCNGC 3 cut(s) 326, 442, 751
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PsiI TTATAA 1 cut(s) 111
Psp6I CCWGG 4 cut(s) 131, 306, 450, 1148
PspGI CCWGG 4 cut(s) 131, 306, 450, 1148
PspN4I GGNNCC 4 cut(s) 57, 431, 648, 1027
PspPI GGNCC 2 cut(s) 429, 646
PstNI CAGNNNCTG 3 cut(s) 464, 632, 857
RigI GGCCGGCC 1 cut(s) 923
RsaI GTAC 4 cut(s) 457, 616, 895, 960
RsaNI GTAC 4 cut(s) 456, 615, 894, 959
RseI CAYNNNNRTG 1 cut(s) 1020
SaqAI TTAA 2 cut(s) 197, 876
SatI GCNGC 3 cut(s) 325, 441, 750
Sau3AI GATC 3 cut(s) 219, 273, 829
Sau96I GGNCC 2 cut(s) 429, 646
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 4 cut(s) 133, 308, 452, 1150
SduI GDGCHC 2 cut(s) 27, 510
SexAI ACCWGGT 1 cut(s) 306
SfaNI GCATC 2 cut(s) 532, 919
SmiMI CAYNNNNRTG 1 cut(s) 1020
SmlI CTYRAG 1 cut(s) 897
SmoI CTYRAG 1 cut(s) 897
SpeI ACTAGT 1 cut(s) 979
SsiI CCGC 1 cut(s) 1074
SspI AATATT 1 cut(s) 351
SspMI CTAG 5 cut(s) 243, 422, 525, 618, 980
StyD4I CCNGG 4 cut(s) 131, 306, 450, 1148
StyI CCWWGG 3 cut(s) 73, 989, 995
TaaI ACNGT 2 cut(s) 380, 634
TaqI TCGA 2 cut(s) 312, 540
TatI WGTACW 2 cut(s) 614, 893
TfiI GAWTC 2 cut(s) 79, 1127
Tru1I TTAA 2 cut(s) 197, 876
Tru9I TTAA 2 cut(s) 197, 876
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 2 cut(s) 601, 758
TseI GCWGC 3 cut(s) 324, 440, 749
Tsp45I GTSAC 2 cut(s) 601, 758
TspDTI ATGAA 9 cut(s) 105, 131, 273, 375, 470, 542, 862, 941, 1140
TspRI CASTG 1 cut(s) 1036
VneI GTGCAC 1 cut(s) 506
XapI RAATTY 3 cut(s) 49, 136, 260
XbaI TCTAGA 2 cut(s) 242, 421
XmiI GTMKAC 1 cut(s) 693
XspI CTAG 5 cut(s) 243, 422, 525, 618, 980
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.