Rorug03G0063300

Flocculation protein FLO11-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
4695908 .. 4700829
4922 bp
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UTR
Exon/CDS
Intron
Rorug03G0063300.1

Sequence Viewer

Length: 432 bp
ATGAGAAAGCCACTCAAGGAGGAGTGTTTTTCACCAATGGTTTTATCACCTCCAACAGTGGCAAGCAGTGAAGTGGTGCTTTCCCCCACTGTAAGGTGGTATGGAACTGTGGATGTATCACACTTGCTGTGCAGTATCAAAGAAAGCAAGGAACTGCAGCATCCATCTGCCTTGGACATGTTTGAGCAAATCATTGGAGCTTCCCAAGGCAAGCAAATAGTCATGTTTCTTGACTACGATGGCACTCTTTCACCCATAGTCGAACACCCAGATCGAGCTTTCATGTCTGATTCTATGAGGAAGACGGTGAATAAACTTGCTAGTGAGTGGAAGATGCAGAGACAAGGTGTACAAAATTGTATGGTTAATGGTGCGAGGAAGAGAGACAAAACTCTTCAATTAGTGCATGGAAATTATAGATCGAGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.2

Weight (kDa)

9.07

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trehalose_PPase PF02358 76 - 111 1.8e-09 Trehalose-phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 398
AluBI AGCT 2 cut(s) 200, 278
AluI AGCT 2 cut(s) 200, 278
Alw26I GTCTC 2 cut(s) 334, 378
ApeKI GCWGC 1 cut(s) 157
AsuHPI GGTGA 4 cut(s) 24, 39, 243, 319
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 172, 233
BcoDI GTCTC 2 cut(s) 334, 378
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmsI GCATC 2 cut(s) 169, 324
BpiI GAAGAC 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 171, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 171, 205
BseGI GGATG 2 cut(s) 118, 160
BseLI CCNNNNNNNGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 2 cut(s) 334, 378
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 2 cut(s) 271, 419
BspMAI CTGCAG 1 cut(s) 159
BsrGI TGTACA 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 171, 205
BssMI GATC 2 cut(s) 271, 419
BssT1I CCWWGG 2 cut(s) 171, 205
Bst4CI ACNGT 4 cut(s) 58, 91, 109, 307
Bst6I CTCTTC 2 cut(s) 374, 399
BstAUI TGTACA 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 64, 212
BstF5I GGATG 2 cut(s) 118, 160
BstKTI GATC 2 cut(s) 274, 422
BstMAI GTCTC 2 cut(s) 334, 378
BstMBI GATC 2 cut(s) 271, 419
BstNSI RCATGY 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 308
BtsCI GGATG 2 cut(s) 118, 160
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 3 cut(s) 63, 73, 87
Cac8I GCNNGC 2 cut(s) 64, 212
Csp6I GTAC 1 cut(s) 350
CviAII CATG 4 cut(s) 178, 223, 283, 407
CviJI RGCY 3 cut(s) 10, 200, 278
CviKI_1 RGCY 3 cut(s) 10, 200, 278
CviQI GTAC 1 cut(s) 350
DpnI GATC 2 cut(s) 273, 421
DpnII GATC 2 cut(s) 271, 419
Eam1104I CTCTTC 2 cut(s) 374, 399
EarI CTCTTC 2 cut(s) 374, 399
Eco130I CCWWGG 2 cut(s) 171, 205
EcoT14I CCWWGG 2 cut(s) 171, 205
ErhI CCWWGG 2 cut(s) 171, 205
FaeI CATG 4 cut(s) 181, 226, 286, 410
FaiI YATR 9 cut(s) 102, 179, 224, 257, 284, 296, 362, 408, 417
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 4 cut(s) 177, 222, 282, 406
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 2 cut(s) 125, 147
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 158
Hin1II CATG 4 cut(s) 181, 226, 286, 410
HinfI GANTC 1 cut(s) 290
HphI GGTGA 4 cut(s) 24, 39, 243, 319
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 350
HpyCH4III ACNGT 4 cut(s) 58, 91, 109, 307
HpyCH4V TGCA 4 cut(s) 132, 157, 337, 406
Hsp92II CATG 4 cut(s) 181, 226, 286, 410
Kzo9I GATC 2 cut(s) 271, 419
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 1 cut(s) 282
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 169, 324
MaeI CTAG 1 cut(s) 321
MalI GATC 2 cut(s) 273, 421
MboI GATC 2 cut(s) 271, 419
MboII GAAGA 4 cut(s) 313, 343, 386, 391
MluCI AATT 3 cut(s) 355, 398, 412
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 4 cut(s) 13, 60, 291, 369
MseI TTAA 1 cut(s) 366
NdeII GATC 2 cut(s) 271, 419
NlaIII CATG 4 cut(s) 181, 226, 286, 410
NspI RCATGY 1 cut(s) 181
PciI ACATGT 1 cut(s) 177
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 159
PscI ACATGT 1 cut(s) 177
PstI CTGCAG 1 cut(s) 159
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 2 cut(s) 271, 419
SetI ASST 5 cut(s) 52, 98, 202, 280, 349
SfaNI GCATC 2 cut(s) 169, 324
SfcI CTRYAG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 3 cut(s) 355, 398, 412
SspMI CTAG 1 cut(s) 321
StyI CCWWGG 2 cut(s) 171, 205
TaaI ACNGT 4 cut(s) 58, 91, 109, 307
TaqI TCGA 3 cut(s) 261, 274, 422
TasI AATT 3 cut(s) 355, 398, 412
TatI WGTACW 1 cut(s) 349
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 3 cut(s) 63, 73, 94
TseI GCWGC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 271
TspRI CASTG 3 cut(s) 63, 73, 94
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.