Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000913

Physical Location & Seq

Genomic Coordinates Reverse (-)

5094004 .. 5097722

Gene Structure 3719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATTTGTTTTGTGTTTTGCAAAGGTGATTTGCCGGAAAATGTTAGAAGTTTCTCCCATAATGAATTGAAATTGGCGACCAATAATTTTCATGCGAGCAATAAGATAGGGCAAGGAGGTTTTGGAATTGTGTACAAGGGAACCCTAAAAAATGGAAGGCAAGTTGCTGTGAAGACACTTTCTGCTAGGTCGAAGCAGGGAGTCCGTGAATTCTTAAATGAGATTAACACTATATCAAATGTCCGGCATCCAAACCTTGTTGAGTTGATTGGGTGCTGTGTTCAAGGAGCTGACCGGATTTTGGTCTATGAATATGTTGAGAATAACAGCCTTGATCGTGCATTATTAGGTGCAAGGAATAAAACCATCAAACTGGATTGGGAAAAAAGAAAAGCCATTTGCTTGGGAATTGCTAGGGGTCTAACATTTCTTCATGAAGAACTGCAGCCCCATATTGTCCACAGAGATATCAAAGCTAGTAATATACTCCTTGACAGAGATTTAAATGCAAAAATTGGAGACTTTGGGCTGGCTAAACTTTTCCCAGATAACATCACTCATATCAGCACCAGGATTGCAGGAACAACAGGTTATTTGGCACCAGAATATGCATTGGGGGGTCAGTTAACCCTGAGGGCCGATGTTTATAGTTTCGGCATTCTCATACTTGAAATAGTTGGTGGCAGAAGCAGTGCCAAGGAAAACTGGGGTGGGACAGAAAAGTTTCTCCTTGAATGGGCATGGCAACTCCACGAAGAAGGGAGACTATTGGAGCTAGTTGACCCGGAGCTGGTGGACTATCCTGAGGAAGAAGTCCTAAGGTACATGAAGGTGGCCTTTTTCTGCACTCAAGCCGCATCAAGCCGAAGACCACTGATGAGCCAGGTTCTTGACATGCTCTCAAGAAATATCAGGCTGAATGAGAAGCAACTTACAGCTCCGGGTTTCTTCAACAACTCAGGGGGGCTCGCAGGACCCTCTTCGAGAAAAAAATATGGTACCGACTCAACTGCCAGCCAGATGAGTTCTGTGCCCGACACAATAACTCAAGTAACGCCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

39.43

Weight (kDa)

8.8

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 233	2e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	32 - 298	4.5e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09010 AT3G09010
fragaria_vesca	FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_3g04850 FvH4_6g11590 FvH4_6g11590 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600 FvH4_6g11600
malus_domestica	MD04G1150800.v1.1 MD04G1150900.v1.1 MD05G1316300.v1.1 MD10G1296800.v1.1 MD12G1164800.v1.1
prunus_persica	Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.4G043800_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275600_v2.0.a1 Prupe.6G275700_v2.0.a1
pyrus_communis	pycom04g13650 pycom04g13660 pycom10g24970
rosa_chinensis	RchiOBHm_Chr3g0463271 RchiOBHm_Chr3g0463281 RchiOBHm_Chr5g0008011
rosa_laevigata	RLG00000024794 RLG00000031527
rosa_multiflora	Rmu_sc0002976.1_g000005 Rmu_sc0003073.1_g000002 Rmu_sc0007348.1_g000004 Rmu_sc0035275.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068460 Rroxscaffold_6G00416710
rosa_rugosa	Rorug03G0063300 Rorug03G0063300 Rorug03G0063400 Rorug03G0063400 Rorug03G0063400 Rorug03G0063500 Rorug04G0432400 Rorug04G0432500
rosa_samantha	Rh3AG121300 Rh3AG121400 Rh3BG125800 Rh3BG125900 Rh3CG127700 Rh3CG127800 Rh3DG126900 Rh3DG127000 Rh5AG060600 Rh5BG057400 Rh5CG067500 Rh5DG056600
rosa_wichuraiana	Rw3G010300 Rw3G010310 Rw5G006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	998
AccB1I	GGYRCC	2 cut(s)	598, 998
AciI	CCGC	1 cut(s)	855
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	3 cut(s)	134, 824, 1000
AfiI	CCNNNNNNNGG	3 cut(s)	301, 736, 790
AgsI	TTSAA	5 cut(s)	70, 284, 671, 734, 952
AjnI	CCWGG	2 cut(s)	569, 882
AluBI	AGCT	5 cut(s)	290, 476, 775, 790, 938
AluI	AGCT	5 cut(s)	290, 476, 775, 790, 938
Alw26I	GTCTC	2 cut(s)	513, 757
AoxI	GGCC	2 cut(s)	636, 834
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	723
Asp718I	GGTACC	1 cut(s)	998
AspS9I	GGNCC	2 cut(s)	636, 974
AsuC2I	CCSGG	2 cut(s)	785, 942
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	974
AxyI	CCTNAGG	3 cut(s)	632, 804, 818
BaeGI	GKGCMC	1 cut(s)	1035
BanI	GGYRCC	2 cut(s)	598, 998
BanII	GRGCYC	1 cut(s)	969
BbsI	GAAGAC	2 cut(s)	179, 874
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	992, 1026
BciT130I	CCWGG	2 cut(s)	571, 884
BcnI	CCSGG	2 cut(s)	785, 942
BcoDI	GTCTC	2 cut(s)	513, 757
BfaI	CTAG	4 cut(s)	186, 414, 477, 776
BfmI	CTRYAG	1 cut(s)	443
BisI	GCNGC	2 cut(s)	446, 855
BlsI	GCNGC	2 cut(s)	447, 856
Bme1390I	CCNGG	4 cut(s)	571, 785, 884, 942
Bme18I	GGWCC	1 cut(s)	974
BmgT120I	GGNCC	2 cut(s)	636, 974
BmiI	GGNNCC	4 cut(s)	142, 600, 976, 1000
BmrFI	CCNGG	4 cut(s)	571, 785, 884, 942
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	2 cut(s)	256, 866
BmuI	ACTGGG	1 cut(s)	715
BpiI	GAAGAC	2 cut(s)	179, 874
BpuEI	CTTGAG	3 cut(s)	834, 886, 1032
BpuMI	CCSGG	2 cut(s)	785, 942
BsaJI	CCNNGG	2 cut(s)	696, 1058
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 736, 790
Bse1I	ACTGG	2 cut(s)	378, 710
Bse21I	CCTNAGG	3 cut(s)	632, 804, 818
BseBI	CCWGG	2 cut(s)	571, 884
BseDI	CCNNGG	2 cut(s)	696, 1058
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	301, 736, 790
BseMII	CTCAG	3 cut(s)	623, 795, 972
BseNI	ACTGG	2 cut(s)	378, 710
BseSI	GKGCMC	1 cut(s)	1035
BseXI	GCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	829
BshFI	GGCC	2 cut(s)	638, 836
BshNI	GGYRCC	2 cut(s)	598, 998
BsiSI	CCGG	5 cut(s)	35, 244, 295, 785, 941
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	3 cut(s)	301, 736, 790
BsmAI	GTCTC	2 cut(s)	513, 757
BsmFI	GGGAC	1 cut(s)	727
BsmI	GAATGC	1 cut(s)	657
BsnI	GGCC	2 cut(s)	638, 836
Bsp1286I	GDGCHC	2 cut(s)	969, 1035
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	1 cut(s)	855
BspANI	GGCC	2 cut(s)	638, 836
BspCNI	CTCAG	3 cut(s)	624, 796, 971
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	4 cut(s)	142, 600, 976, 1000
BspMAI	CTGCAG	1 cut(s)	447
BspT107I	GGYRCC	2 cut(s)	598, 998
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	378, 710
BssECI	CCNNGG	2 cut(s)	696, 1058
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	2 cut(s)	571, 884
Bst4CI	ACNGT	1 cut(s)	1062
Bst6I	CTCTTC	1 cut(s)	985
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	4 cut(s)	97, 531, 969, 1015
BstDEI	CTNAG	4 cut(s)	632, 804, 818, 958
BstDSI	CCRYGG	1 cut(s)	1058
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	2 cut(s)	513, 757
BstMBI	GATC	1 cut(s)	334
BstNI	CCWGG	2 cut(s)	571, 884
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	4 cut(s)	569, 783, 882, 940
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	1035
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	2 cut(s)	179, 874
BstXI	CCANNNNNNTGG	2 cut(s)	373, 403
Bsu36I	CCTNAGG	3 cut(s)	632, 804, 818
BsuRI	GGCC	2 cut(s)	638, 836
BtgI	CCRYGG	1 cut(s)	1058
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	697
BtsIMutI	CAGTG	2 cut(s)	697, 872
Cac8I	GCNNGC	4 cut(s)	97, 531, 969, 1015
CciI	TCATGA	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	636, 974
Csp6I	GTAC	3 cut(s)	133, 823, 999
CviAII	CATG	5 cut(s)	92, 434, 741, 826, 895
CviQI	GTAC	3 cut(s)	133, 823, 999
DdeI	CTNAG	4 cut(s)	632, 804, 818, 958
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DraI	TTTAAA	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	985
EarI	CTCTTC	1 cut(s)	985
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	969
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	974
Eco81I	CCTNAGG	3 cut(s)	632, 804, 818
EcoO109I	RGGNCCY	1 cut(s)	974
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	569, 882
EcoRV	GATATC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	696
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	969
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	5 cut(s)	95, 437, 744, 829, 898
FalI	AAGNNNNNCTT	2 cut(s)	821, 853
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	5 cut(s)	91, 433, 740, 825, 894
Fnu4HI	GCNGC	2 cut(s)	446, 855
FokI	GGATG	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	969
Fsp4HI	GCNGC	2 cut(s)	446, 855
FspBI	CTAG	4 cut(s)	186, 414, 477, 776
GluI	GCNGC	2 cut(s)	446, 855
HaeIII	GGCC	2 cut(s)	638, 836
HapII	CCGG	5 cut(s)	35, 244, 295, 785, 941
Hin1II	CATG	5 cut(s)	95, 437, 744, 829, 898
HincII	GTYRAC	2 cut(s)	627, 781
HindII	GTYRAC	2 cut(s)	627, 781
HinfI	GANTC	2 cut(s)	201, 1004
HpaI	GTTAAC	1 cut(s)	627
HpaII	CCGG	5 cut(s)	35, 244, 295, 785, 941
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	5 cut(s)	133, 460, 627, 781, 796
Hpy188III	TCNNGA	5 cut(s)	434, 803, 890, 903, 984
Hpy8I	GTNNAC	5 cut(s)	133, 460, 627, 781, 796
HpyAV	CCTTC	3 cut(s)	150, 752, 823
HpyCH4III	ACNGT	1 cut(s)	1062
HpyCH4V	TGCA	8 cut(s)	21, 341, 353, 445, 509, 578, 611, 846
HpyF3I	CTNAG	4 cut(s)	632, 804, 818, 958
Hsp92II	CATG	5 cut(s)	95, 437, 744, 829, 898
KpnI	GGTACC	1 cut(s)	1002
KspAI	GTTAAC	1 cut(s)	627
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	4 cut(s)	287, 772, 787, 943
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	256, 866
MaeI	CTAG	4 cut(s)	186, 414, 477, 776
MaeIII	GTNAC	1 cut(s)	1051
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	8 cut(s)	184, 422, 449, 767, 821, 879, 940, 972
MhlI	GDGCHC	2 cut(s)	969, 1035
MluCI	AATT	7 cut(s)	65, 71, 85, 126, 209, 408, 513
MlyI	GAGTC	2 cut(s)	210, 998
MnlI	CCTC	4 cut(s)	110, 627, 799, 988
Mph1103I	ATGCAT	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	4 cut(s)	215, 225, 503, 626
MslI	CAYNNNNRTG	1 cut(s)	830
MspI	CCGG	5 cut(s)	35, 244, 295, 785, 941
MspR9I	CCNGG	4 cut(s)	571, 785, 884, 942
Mva1269I	GAATGC	1 cut(s)	657
MvaI	CCWGG	2 cut(s)	571, 884
NciI	CCSGG	2 cut(s)	785, 942
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	95, 437, 744, 829, 898
NlaIV	GGNNCC	4 cut(s)	142, 600, 976, 1000
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	898
PagI	TCATGA	1 cut(s)	433
PctI	GAATGC	1 cut(s)	657
PdmI	GAANNNNTTC	1 cut(s)	723
PkrI	GCNGC	2 cut(s)	447, 856
PleI	GAGTC	2 cut(s)	209, 998
PpsI	GAGTC	2 cut(s)	209, 998
PpuMI	RGGWCCY	1 cut(s)	974
Psp5II	RGGWCCY	1 cut(s)	974
Psp6I	CCWGG	2 cut(s)	569, 882
PspGI	CCWGG	2 cut(s)	569, 882
PspN4I	GGNNCC	4 cut(s)	142, 600, 976, 1000
PspPI	GGNCC	2 cut(s)	636, 974
PspPPI	RGGWCCY	1 cut(s)	974
PstI	CTGCAG	1 cut(s)	447
RsaI	GTAC	3 cut(s)	134, 824, 1000
RsaNI	GTAC	3 cut(s)	133, 823, 999
RseI	CAYNNNNRTG	1 cut(s)	830
SaqAI	TTAA	4 cut(s)	215, 225, 503, 626
SatI	GCNGC	2 cut(s)	446, 855
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	2 cut(s)	636, 974
SchI	GAGTC	2 cut(s)	210, 998
ScrFI	CCNGG	4 cut(s)	571, 785, 884, 942
SduI	GDGCHC	2 cut(s)	969, 1035
SfaNI	GCATC	2 cut(s)	256, 866
SfcI	CTRYAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	974
SmiI	ATTTAAAT	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	3 cut(s)	849, 901, 1047
SmoI	CTYRAG	3 cut(s)	849, 901, 1047
Sse9I	AATT	7 cut(s)	65, 71, 85, 126, 209, 408, 513
SsiI	CCGC	1 cut(s)	855
SspMI	CTAG	4 cut(s)	186, 414, 477, 776
StyD4I	CCNGG	4 cut(s)	569, 783, 882, 940
StyI	CCWWGG	1 cut(s)	696
SwaI	ATTTAAAT	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	1062
TaqI	TCGA	2 cut(s)	191, 983
TasI	AATT	7 cut(s)	65, 71, 85, 126, 209, 408, 513
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	857
Tru1I	TTAA	4 cut(s)	215, 225, 503, 626
Tru9I	TTAA	4 cut(s)	215, 225, 503, 626
TscAI	CASTG	2 cut(s)	697, 879
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	6 cut(s)	78, 80, 324, 422, 450, 842
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	697, 879
VpaK11BI	GGWCC	1 cut(s)	974
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	898
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	4 cut(s)	186, 414, 477, 776
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.